Wall clock time and date at job start Wed Apr 1 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00666 * 2 1 4 4 C 1.53036 * 109.46190 * 239.99932 * 3 2 1 5 5 C 1.53188 * 109.31218 * 178.62678 * 4 3 2 6 6 N 1.46926 * 108.77916 * 54.63272 * 5 4 3 7 7 C 1.34777 * 120.62982 * 126.36496 * 6 5 4 8 8 O 1.21358 * 120.00130 * 6.69535 * 7 6 5 9 9 C 1.49354 * 119.99871 * 186.69143 * 7 6 5 10 10 O 1.21385 * 119.99944 * 7.19476 * 9 7 6 11 11 N 1.34779 * 120.00256 * 187.19537 * 9 7 6 12 12 C 1.39719 * 119.99930 * 174.99720 * 11 9 7 13 13 C 1.39021 * 120.04218 * 331.76383 * 12 11 9 14 14 C 1.38138 * 120.05857 * 180.02562 * 13 12 11 15 15 C 1.38186 * 120.14628 * 359.72248 * 14 13 12 16 16 C 1.38917 * 120.08124 * 0.55873 * 15 14 13 17 17 O 1.35750 * 120.03444 * 179.71978 * 16 15 14 18 18 C 1.34830 * 117.00178 * 173.91013 * 17 16 15 19 19 H 1.07989 * 120.00076 * 5.08203 * 18 17 16 20 20 C 1.38651 * 119.99570 * 185.07489 * 18 17 16 21 21 N 1.31556 * 120.00534 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99543 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47346 * 89.99990 * 22 20 18 24 24 H 1.48508 * 109.47049 * 209.99797 * 22 20 18 25 25 H 1.48495 * 109.47007 * 329.99842 * 22 20 18 26 26 C 1.38760 * 119.93602 * 359.44418 * 16 15 14 27 27 C 1.46924 * 118.73824 * 306.64670 * 6 5 4 28 28 C 1.52767 * 109.00892 * 53.30426 * 27 6 5 29 29 H 1.07999 * 119.99253 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00243 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99775 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.45444 * 359.96878 * 3 2 1 33 33 H 1.08996 * 109.49811 * 58.67373 * 4 3 2 34 34 H 1.09004 * 109.52460 * 298.59164 * 4 3 2 35 35 H 1.08998 * 109.58639 * 294.84561 * 5 4 3 36 36 H 1.09004 * 109.70611 * 174.49120 * 5 4 3 37 37 H 0.97001 * 119.99476 * 354.99604 * 11 9 7 38 38 H 1.07992 * 119.97246 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.93090 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.95722 * 180.27798 * 15 14 13 41 41 H 0.96996 * 120.00063 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.07184 * 180.26039 * 26 16 15 43 43 H 1.08997 * 109.58886 * 173.14156 * 27 6 5 44 44 H 1.09006 * 109.58510 * 293.56668 * 27 6 5 45 45 H 1.08996 * 109.56306 * 185.55397 * 28 27 6 46 46 H 1.08997 * 109.35913 * 65.50386 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9434 1.3858 -1.2496 5 6 3.6816 2.7280 -1.2636 6 7 4.4144 2.8779 0.0010 7 6 5.7351 3.1468 0.0017 8 8 6.3059 3.3875 -1.0419 9 6 6.4962 3.1487 1.2868 10 8 5.9583 2.7818 2.3112 11 7 7.7802 3.5579 1.3090 12 6 8.4601 3.6593 2.5254 13 6 7.7574 3.9226 3.6957 14 6 8.4293 4.0234 4.8984 15 6 9.8004 3.8574 4.9434 16 6 10.5093 3.5999 3.7767 17 8 11.8569 3.4426 3.8212 18 6 12.4678 3.0707 2.6782 19 1 11.8997 2.9916 1.7633 20 6 13.8256 2.7900 2.6777 21 7 14.5179 2.8869 3.7921 22 14 14.6722 2.2754 1.0940 23 1 15.1739 3.4809 0.3865 24 1 15.8118 1.3775 1.4110 25 1 13.7041 1.5588 0.2255 26 6 9.8378 3.4979 2.5667 27 6 3.6814 2.7229 1.2649 28 6 2.9420 1.3862 1.2506 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3552 2.1334 -0.0006 33 1 2.3195 1.3044 -2.1396 34 1 3.6684 0.5719 -1.2379 35 1 2.9618 3.5398 -1.3672 36 1 4.3831 2.7529 -2.0975 37 1 8.2322 3.7818 0.4805 38 1 6.6853 4.0484 3.6645 39 1 7.8813 4.2277 5.8064 40 1 10.3221 3.9325 5.8860 41 1 15.4677 2.6902 3.7917 42 1 10.3862 3.2936 1.6590 43 1 4.3829 2.7419 2.0989 44 1 2.9615 3.5344 1.3717 45 1 2.3172 1.3052 2.1400 46 1 3.6670 0.5723 1.2394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732479993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:39 Heat of formation + Delta-G solvation = -26.811608 kcal Electronic energy + Delta-G solvation = -29294.064114 eV Core-core repulsion = 25150.958990 eV Total energy + Delta-G solvation = -4143.105124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31795 -39.69254 -38.65245 -38.09659 -36.64428 -35.19704 -34.26184 -32.27999 -31.58050 -31.28551 -29.61171 -28.77482 -26.49738 -25.38090 -24.36489 -23.52711 -22.01831 -21.82599 -20.64324 -20.24054 -19.82718 -18.27463 -18.05754 -17.18611 -17.02436 -16.13700 -15.75347 -15.42790 -15.26225 -15.12283 -15.03052 -14.71721 -14.36952 -14.26229 -14.14582 -14.00793 -13.68947 -13.46107 -13.11548 -12.84999 -12.71778 -12.48830 -12.40961 -11.97535 -11.80614 -11.66412 -11.50226 -11.19031 -11.15125 -11.04567 -10.99069 -10.85172 -10.76967 -10.47496 -9.95406 -9.73125 -9.54639 -9.12413 -8.99177 -8.84393 -7.84083 -7.25238 -6.48408 -4.08447 1.09706 1.90679 2.05848 2.18150 2.33398 3.08439 3.12110 3.13466 3.17056 3.34534 3.93837 4.14659 4.28438 4.40496 4.52114 4.59906 4.76614 4.86532 4.97045 5.01563 5.04417 5.13989 5.22963 5.34209 5.39200 5.45038 5.54571 5.57402 5.59978 5.66152 5.74276 5.89991 5.96512 6.02061 6.07250 6.13647 6.23934 6.27177 6.40000 6.49943 6.73540 6.85691 6.90723 7.04560 7.21295 7.34415 7.37428 7.63085 7.69011 7.93379 7.97106 8.96905 9.65014 10.69206 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002259 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.644620 B =12389.936882 C =13273.564440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.065 4.065 4 C -0.125 4.125 5 C 0.107 3.893 6 N -0.580 5.580 7 C 0.512 3.488 8 O -0.520 6.520 9 C 0.507 3.493 10 O -0.490 6.490 11 N -0.629 5.629 12 C 0.172 3.828 13 C -0.209 4.209 14 C -0.062 4.062 15 C -0.196 4.196 16 C 0.169 3.831 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.091 0.909 20 C 0.041 3.959 21 N -0.860 5.860 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.252 4.252 27 C 0.046 3.954 28 C -0.121 4.121 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.420 0.580 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.133 0.867 43 H 0.161 0.839 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.696 -1.725 -7.905 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.163 4.163 3 C -0.084 4.084 4 C -0.163 4.163 5 C -0.015 4.015 6 N -0.314 5.314 7 C 0.294 3.706 8 O -0.396 6.396 9 C 0.290 3.710 10 O -0.367 6.367 11 N -0.273 5.273 12 C 0.079 3.921 13 C -0.230 4.230 14 C -0.081 4.081 15 C -0.215 4.215 16 C 0.114 3.886 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.274 4.274 27 C -0.075 4.075 28 C -0.159 4.159 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.257 0.743 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 43 H 0.177 0.823 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.367 -1.847 -7.534 25.572 hybrid contribution 0.452 -0.311 -1.390 1.495 sum -23.915 -2.158 -8.924 25.617 Atomic orbital electron populations 1.23845 0.95900 1.01793 1.01558 1.22945 0.95865 0.98195 0.99315 1.20428 0.96793 0.95760 0.95382 1.21923 0.98803 0.97476 0.98085 1.21743 0.95949 0.97335 0.86429 1.47930 1.06952 1.67835 1.08639 1.19978 0.82882 0.78491 0.89255 1.90768 1.68484 1.47332 1.33061 1.20128 0.83044 0.78593 0.89219 1.90312 1.65994 1.45778 1.34618 1.43191 1.11324 1.62537 1.10257 1.17443 0.90854 0.99536 0.84284 1.20649 0.99942 1.10909 0.91452 1.20542 0.93104 0.97658 0.96797 1.20309 0.93580 1.10830 0.96812 1.19046 0.84933 0.92326 0.92291 1.84007 1.13208 1.74387 1.36045 1.21289 0.92189 1.47170 0.86325 0.89128 1.25283 0.95553 0.96630 0.98943 1.70031 1.08387 1.44857 1.26222 0.85724 0.79081 0.78777 0.79939 1.19823 1.20213 1.19189 1.20806 0.92332 1.14575 0.99654 1.23239 0.98998 0.96867 0.88350 1.21790 0.98539 0.98092 0.97469 0.88650 0.88547 0.87394 0.90643 0.90374 0.91141 0.90946 0.88632 0.74289 0.85610 0.86387 0.86218 0.91953 0.84989 0.82310 0.91779 0.90378 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 29.02 0.42 -0.77 16 2 C -0.15 -0.98 8.77 -36.02 -0.32 -1.30 16 3 C -0.07 -0.45 2.44 -91.73 -0.22 -0.68 16 4 C -0.12 -0.90 5.34 -26.62 -0.14 -1.04 16 5 C 0.11 0.92 6.42 -3.71 -0.02 0.89 16 6 N -0.58 -6.20 2.98 -173.57 -0.52 -6.72 16 7 C 0.51 6.81 7.74 -11.63 -0.09 6.72 16 8 O -0.52 -7.85 15.94 5.49 0.09 -7.76 16 9 C 0.51 7.41 7.55 -11.63 -0.09 7.32 16 10 O -0.49 -7.48 10.44 5.47 0.06 -7.42 16 11 N -0.63 -9.81 5.34 -10.31 -0.06 -9.87 16 12 C 0.17 3.17 6.37 -83.78 -0.53 2.64 16 13 C -0.21 -3.72 8.69 -39.33 -0.34 -4.07 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 15 C -0.20 -4.02 9.99 -39.35 -0.39 -4.42 16 16 C 0.17 3.97 6.64 -39.14 -0.26 3.71 16 17 O -0.17 -4.83 9.76 0.05 0.00 -4.83 16 18 C -0.39 -10.77 9.49 30.88 0.29 -10.48 16 19 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 22 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.25 -5.33 9.07 -39.19 -0.36 -5.69 16 27 C 0.05 0.44 6.24 -3.93 -0.02 0.41 16 28 C -0.12 -0.99 5.33 -26.83 -0.14 -1.13 16 29 H 0.10 0.52 7.83 -52.49 -0.41 0.11 16 30 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 31 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.08 0.49 7.78 -51.93 -0.40 0.09 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.91 7.05 -51.93 -0.37 0.54 16 37 H 0.42 5.93 8.28 -40.82 -0.34 5.59 16 38 H 0.13 2.09 6.01 -52.49 -0.32 1.77 16 39 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 40 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 43 H 0.16 1.83 3.78 -56.78 -0.21 1.61 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -30.97 379.89 -7.67 -38.64 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.98 Total: 9.42 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.72 Total: -8.35 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.19 Total: -40.69 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.15 Total: -20.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.97 -7.67 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732479993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.831 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds