Wall clock time and date at job start Wed Apr 1 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00666 * 2 1 4 4 C 1.53036 * 109.46190 * 239.99932 * 3 2 1 5 5 C 1.53188 * 109.31218 * 178.62678 * 4 3 2 6 6 N 1.46926 * 108.77916 * 54.63272 * 5 4 3 7 7 C 1.34777 * 120.62982 * 126.36496 * 6 5 4 8 8 O 1.21358 * 120.00130 * 6.69535 * 7 6 5 9 9 C 1.49354 * 119.99871 * 186.69143 * 7 6 5 10 10 O 1.21385 * 119.99944 * 7.19476 * 9 7 6 11 11 N 1.34779 * 120.00256 * 187.19537 * 9 7 6 12 12 C 1.39719 * 119.99930 * 174.99720 * 11 9 7 13 13 C 1.39021 * 120.04218 * 331.76383 * 12 11 9 14 14 C 1.38138 * 120.05857 * 180.02562 * 13 12 11 15 15 C 1.38186 * 120.14628 * 359.72248 * 14 13 12 16 16 C 1.38917 * 120.08124 * 0.55873 * 15 14 13 17 17 O 1.35750 * 120.03444 * 179.71978 * 16 15 14 18 18 C 1.34830 * 117.00178 * 173.91013 * 17 16 15 19 19 H 1.07989 * 120.00076 * 5.08203 * 18 17 16 20 20 C 1.38651 * 119.99570 * 185.07489 * 18 17 16 21 21 N 1.31556 * 120.00534 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99543 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47346 * 89.99990 * 22 20 18 24 24 H 1.48508 * 109.47049 * 209.99797 * 22 20 18 25 25 H 1.48495 * 109.47007 * 329.99842 * 22 20 18 26 26 C 1.38760 * 119.93602 * 359.44418 * 16 15 14 27 27 C 1.46924 * 118.73824 * 306.64670 * 6 5 4 28 28 C 1.52767 * 109.00892 * 53.30426 * 27 6 5 29 29 H 1.07999 * 119.99253 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00243 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99775 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.45444 * 359.96878 * 3 2 1 33 33 H 1.08996 * 109.49811 * 58.67373 * 4 3 2 34 34 H 1.09004 * 109.52460 * 298.59164 * 4 3 2 35 35 H 1.08998 * 109.58639 * 294.84561 * 5 4 3 36 36 H 1.09004 * 109.70611 * 174.49120 * 5 4 3 37 37 H 0.97001 * 119.99476 * 354.99604 * 11 9 7 38 38 H 1.07992 * 119.97246 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.93090 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.95722 * 180.27798 * 15 14 13 41 41 H 0.96996 * 120.00063 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.07184 * 180.26039 * 26 16 15 43 43 H 1.08997 * 109.58886 * 173.14156 * 27 6 5 44 44 H 1.09006 * 109.58510 * 293.56668 * 27 6 5 45 45 H 1.08996 * 109.56306 * 185.55397 * 28 27 6 46 46 H 1.08997 * 109.35913 * 65.50386 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9434 1.3858 -1.2496 5 6 3.6816 2.7280 -1.2636 6 7 4.4144 2.8779 0.0010 7 6 5.7351 3.1468 0.0017 8 8 6.3059 3.3875 -1.0419 9 6 6.4962 3.1487 1.2868 10 8 5.9583 2.7818 2.3112 11 7 7.7802 3.5579 1.3090 12 6 8.4601 3.6593 2.5254 13 6 7.7574 3.9226 3.6957 14 6 8.4293 4.0234 4.8984 15 6 9.8004 3.8574 4.9434 16 6 10.5093 3.5999 3.7767 17 8 11.8569 3.4426 3.8212 18 6 12.4678 3.0707 2.6782 19 1 11.8997 2.9916 1.7633 20 6 13.8256 2.7900 2.6777 21 7 14.5179 2.8869 3.7921 22 14 14.6722 2.2754 1.0940 23 1 15.1739 3.4809 0.3865 24 1 15.8118 1.3775 1.4110 25 1 13.7041 1.5588 0.2255 26 6 9.8378 3.4979 2.5667 27 6 3.6814 2.7229 1.2649 28 6 2.9420 1.3862 1.2506 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3552 2.1334 -0.0006 33 1 2.3195 1.3044 -2.1396 34 1 3.6684 0.5719 -1.2379 35 1 2.9618 3.5398 -1.3672 36 1 4.3831 2.7529 -2.0975 37 1 8.2322 3.7818 0.4805 38 1 6.6853 4.0484 3.6645 39 1 7.8813 4.2277 5.8064 40 1 10.3221 3.9325 5.8860 41 1 15.4677 2.6902 3.7917 42 1 10.3862 3.2936 1.6590 43 1 4.3829 2.7419 2.0989 44 1 2.9615 3.5344 1.3717 45 1 2.3172 1.3052 2.1400 46 1 3.6670 0.5723 1.2394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732479993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:38 Heat of formation + Delta-G solvation = -45.768317 kcal Electronic energy + Delta-G solvation = -29294.886138 eV Core-core repulsion = 25150.958990 eV Total energy + Delta-G solvation = -4143.927148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.44580 -40.99808 -40.06999 -39.01220 -38.21926 -36.21236 -35.38023 -34.24153 -32.26165 -31.95593 -31.15361 -30.39207 -27.61498 -27.14598 -25.31069 -24.34246 -23.58108 -23.02803 -21.78742 -20.99801 -20.61859 -19.84227 -19.45425 -18.66308 -18.12296 -17.30387 -17.06707 -16.75268 -16.65881 -16.13104 -15.97348 -15.77010 -15.66420 -15.56657 -15.32963 -15.12769 -14.91947 -14.62357 -14.44264 -14.15769 -13.66704 -13.60234 -13.46387 -13.38047 -13.08033 -12.82631 -12.67297 -12.54089 -12.36985 -12.17756 -12.13410 -11.86709 -11.73267 -11.53544 -11.41910 -11.33549 -10.76569 -10.37896 -10.03180 -9.87555 -9.40719 -8.92796 -8.47418 -6.15993 -0.12044 0.60082 0.72315 1.09681 1.35504 1.43036 1.44050 1.52108 1.94934 2.16786 2.29520 2.81751 3.04440 3.14614 3.49052 3.72443 3.77191 3.96991 4.07343 4.11282 4.26671 4.30488 4.32966 4.39413 4.43939 4.49967 4.53717 4.57893 4.73471 4.81572 4.86156 4.94161 4.97207 5.05854 5.09336 5.10365 5.12986 5.22989 5.30746 5.38019 5.47855 5.64618 5.66118 5.79125 5.87355 5.93832 6.00737 6.07282 6.17889 6.55193 6.73630 6.97179 7.75677 8.75145 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002259 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.644620 B =12389.936882 C =13273.564440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C -0.059 4.059 4 C -0.119 4.119 5 C 0.104 3.896 6 N -0.570 5.570 7 C 0.512 3.488 8 O -0.543 6.543 9 C 0.510 3.490 10 O -0.495 6.495 11 N -0.631 5.631 12 C 0.178 3.822 13 C -0.196 4.196 14 C -0.047 4.047 15 C -0.208 4.208 16 C 0.135 3.865 17 O -0.224 6.224 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.020 4.020 21 N -0.917 5.917 22 Si 1.015 2.985 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.260 4.260 27 C 0.045 3.955 28 C -0.117 4.117 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.426 0.574 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.122 0.878 41 H 0.273 0.727 42 H 0.126 0.874 43 H 0.143 0.857 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.447 -1.717 -9.133 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C -0.078 4.078 4 C -0.157 4.157 5 C -0.017 4.017 6 N -0.303 5.303 7 C 0.294 3.706 8 O -0.422 6.422 9 C 0.294 3.706 10 O -0.372 6.372 11 N -0.276 5.276 12 C 0.084 3.916 13 C -0.217 4.217 14 C -0.065 4.065 15 C -0.227 4.227 16 C 0.083 3.917 17 O -0.130 6.130 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.218 4.218 21 N -0.554 5.554 22 Si 0.835 3.165 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.281 4.281 27 C -0.075 4.075 28 C -0.155 4.155 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.264 0.736 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.160 0.840 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.222 -1.841 -8.769 29.610 hybrid contribution 1.176 -0.286 -0.943 1.534 sum -27.046 -2.127 -9.712 28.815 Atomic orbital electron populations 1.24005 0.95690 1.02589 1.00089 1.22912 0.96160 0.97917 1.00645 1.20383 0.96629 0.96413 0.94345 1.21896 0.98621 0.96024 0.99187 1.21960 0.95940 0.98961 0.84847 1.48088 1.06088 1.65989 1.10121 1.19688 0.83681 0.79087 0.88145 1.90766 1.69097 1.48979 1.33338 1.20447 0.82499 0.77792 0.89882 1.90345 1.66083 1.45603 1.35126 1.43186 1.11807 1.63016 1.09555 1.17473 0.90018 0.98277 0.85839 1.21049 1.00939 1.08593 0.91088 1.20989 0.91795 0.95256 0.98493 1.20573 0.94922 1.11127 0.96110 1.19590 0.84157 0.93649 0.94280 1.83974 1.15374 1.77031 1.36656 1.21763 0.92910 1.47366 0.86871 0.88180 1.26528 0.96016 0.96482 1.02800 1.70170 1.08815 1.47540 1.28918 0.84632 0.77870 0.78712 0.75310 1.18719 1.19611 1.17924 1.20809 0.93595 1.14983 0.98736 1.23239 0.98815 0.98447 0.87011 1.21753 0.98382 0.96571 0.98795 0.87753 0.87921 0.87873 0.89359 0.88548 0.92534 0.88695 0.89688 0.73582 0.83483 0.82094 0.86015 0.91799 0.85631 0.84049 0.89620 0.89286 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 14.32 67.78 0.97 -0.77 16 2 C -0.16 -1.75 8.77 25.65 0.22 -1.53 16 3 C -0.06 -0.66 2.44 -11.51 -0.03 -0.68 16 4 C -0.12 -1.42 5.34 30.67 0.16 -1.26 16 5 C 0.10 1.52 6.42 86.36 0.55 2.07 16 6 N -0.57 -10.98 2.98 -821.42 -2.45 -13.42 16 7 C 0.51 12.91 7.74 87.24 0.68 13.58 16 8 O -0.54 -15.90 15.94 -3.27 -0.05 -15.95 16 9 C 0.51 14.14 7.55 87.24 0.66 14.79 16 10 O -0.49 -14.08 10.44 -3.35 -0.04 -14.12 16 11 N -0.63 -19.07 5.34 -304.88 -1.63 -20.70 16 12 C 0.18 6.42 6.37 38.20 0.24 6.66 16 13 C -0.20 -6.52 8.69 22.43 0.19 -6.33 16 14 C -0.05 -1.55 10.03 22.23 0.22 -1.32 16 15 C -0.21 -8.57 9.99 22.42 0.22 -8.34 16 16 C 0.13 6.57 6.64 22.56 0.15 6.72 16 17 O -0.22 -13.23 9.76 -22.74 -0.22 -13.45 16 18 C -0.41 -23.71 9.49 67.92 0.64 -23.07 16 19 H 0.10 5.28 5.20 -2.92 -0.02 5.26 16 20 C -0.02 -1.14 5.49 84.83 0.47 -0.67 16 21 N -0.92 -55.64 13.67 21.61 0.30 -55.35 16 22 Si 1.02 42.71 29.55 68.60 2.03 44.74 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 26 C -0.26 -11.22 9.07 22.52 0.20 -11.01 16 27 C 0.05 0.73 6.24 86.22 0.54 1.27 16 28 C -0.12 -1.63 5.33 30.53 0.16 -1.47 16 29 H 0.10 0.79 7.83 -2.91 -0.02 0.76 16 30 H 0.10 0.82 8.06 -2.91 -0.02 0.80 16 31 H 0.10 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.09 0.79 7.78 -2.39 -0.02 0.77 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.47 7.05 -2.38 -0.02 1.46 16 37 H 0.43 11.85 8.28 -92.71 -0.77 11.09 16 38 H 0.15 4.35 6.01 -2.91 -0.02 4.33 16 39 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 40 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.13 5.48 5.64 -2.91 -0.02 5.46 16 43 H 0.14 2.92 3.78 -79.24 -0.30 2.62 16 44 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.64 379.89 4.17 -66.47 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.03 Total: 33.12 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 6.27 Total: -11.34 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.78 Total: -89.47 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.31 Total: -43.52 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.64 4.17 -66.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732479993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.702 kcal (2) G-P(sol) polarization free energy of solvation -70.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds