Wall clock time and date at job start Wed Apr 1 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 C 1.52997 * 109.47094 * 119.99617 * 2 1 3 5 5 N 1.46505 * 109.47438 * 65.00219 * 4 2 1 6 6 C 1.35482 * 124.78488 * 265.02781 * 5 4 2 7 7 C 1.36462 * 109.75241 * 179.72758 * 6 5 4 8 8 C 1.46821 * 126.77417 * 180.02562 * 7 6 5 9 9 O 1.21702 * 120.00006 * 173.22257 * 8 7 6 10 10 N 1.34781 * 119.99921 * 353.22248 * 8 7 6 11 11 C 1.36960 * 119.99985 * 3.07082 * 10 8 7 12 12 H 1.07997 * 120.00362 * 304.70077 * 11 10 8 13 13 C 1.38973 * 119.99654 * 124.70069 * 11 10 8 14 14 N 1.31418 * 119.99857 * 3.70022 * 13 11 10 15 15 Si 1.86795 * 120.00021 * 183.69695 * 13 11 10 16 16 H 1.48499 * 109.47009 * 90.00096 * 15 13 11 17 17 H 1.48498 * 109.47629 * 209.99972 * 15 13 11 18 18 H 1.48510 * 109.47316 * 330.00257 * 15 13 11 19 19 C 1.46503 * 119.99673 * 183.07664 * 10 8 7 20 20 C 1.50692 * 109.47347 * 94.35389 * 19 10 8 21 21 O 1.20825 * 120.00002 * 359.97438 * 20 19 10 22 22 O 1.34228 * 120.00284 * 179.97438 * 20 19 10 23 23 C 1.47454 * 106.45115 * 0.02562 * 7 6 5 24 24 C 1.39270 * 133.99327 * 179.97438 * 23 7 6 25 25 C 1.37764 * 119.66783 * 180.02562 * 24 23 7 26 26 C 1.38746 * 120.30221 * 359.97438 * 25 24 23 27 27 C 1.37777 * 120.63050 * 359.97438 * 26 25 24 28 28 C 1.37974 * 124.78129 * 84.71834 * 5 4 2 29 29 H 1.08996 * 109.47155 * 60.00498 * 1 2 3 30 30 H 1.09003 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46986 * 300.00085 * 1 2 3 32 32 H 1.09000 * 109.47420 * 239.99637 * 2 1 3 33 33 H 1.08998 * 109.47113 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46554 * 299.99890 * 3 2 1 35 35 H 1.08992 * 109.47069 * 59.99705 * 3 2 1 36 36 H 1.09000 * 109.47505 * 305.00353 * 4 2 1 37 37 H 1.08999 * 109.47371 * 185.00128 * 4 2 1 38 38 H 1.08005 * 125.12415 * 359.72768 * 6 5 4 39 39 H 0.97010 * 119.99852 * 179.97438 * 14 13 11 40 40 H 1.09005 * 109.46632 * 214.35702 * 19 10 8 41 41 H 1.08994 * 109.47080 * 334.34801 * 19 10 8 42 42 H 0.96698 * 117.00809 * 180.02562 * 22 20 19 43 43 H 1.07993 * 120.16719 * 0.03650 * 24 23 7 44 44 H 1.07999 * 119.84920 * 180.02562 * 25 24 23 45 45 H 1.07997 * 119.68632 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.03450 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1907 6 6 0.5440 -2.6547 1.7690 7 6 0.4798 -3.9944 1.5175 8 6 -0.5644 -4.9239 1.9662 9 8 -0.5670 -6.0741 1.5685 10 7 -1.5200 -4.5034 2.8185 11 6 -1.5541 -3.1934 3.2168 12 1 -0.6829 -2.7438 3.6697 13 6 -2.7100 -2.4428 3.0382 14 7 -3.7929 -3.0088 2.5544 15 14 -2.7244 -0.6293 3.4859 16 1 -2.3173 0.1751 2.3059 17 1 -4.0927 -0.2339 3.9061 18 1 -1.7746 -0.3872 4.6015 19 6 -2.5222 -5.4476 3.3190 20 6 -2.0705 -6.0038 4.6447 21 8 -1.0191 -5.6484 5.1223 22 8 -2.8361 -6.8941 5.2950 23 6 1.6660 -4.3242 0.7061 24 6 2.1573 -5.5002 0.1445 25 6 3.3291 -5.4724 -0.5795 26 6 4.0183 -4.2804 -0.7505 27 6 3.5429 -3.1097 -0.2012 28 6 2.3619 -3.1171 0.5338 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 -0.1799 -2.0947 2.3426 39 1 -4.5998 -2.4849 2.4301 40 1 -3.4746 -4.9329 3.4463 41 1 -2.6422 -6.2623 2.6050 42 1 -2.5048 -7.2223 6.1421 43 1 1.6224 -6.4291 0.2757 44 1 3.7125 -6.3825 -1.0167 45 1 4.9361 -4.2702 -1.3196 46 1 4.0870 -2.1872 -0.3407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736454980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:28 Heat of formation + Delta-G solvation = -77.621285 kcal Electronic energy + Delta-G solvation = -31269.404469 eV Core-core repulsion = 27124.096072 eV Total energy + Delta-G solvation = -4145.308397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42629 -41.26684 -39.82616 -38.33234 -37.09558 -36.65659 -36.45266 -33.57693 -33.04561 -30.83869 -30.62709 -29.05122 -28.04860 -27.29381 -26.64192 -23.72793 -23.56315 -22.26421 -22.09016 -20.98697 -20.86070 -19.20976 -19.08501 -18.15137 -17.44068 -17.23334 -16.93068 -16.63887 -16.29949 -16.22591 -16.18613 -15.92360 -15.52469 -15.15354 -14.86202 -14.66367 -14.34439 -14.28804 -13.91108 -13.86648 -13.54868 -13.30971 -13.16118 -13.07360 -13.01578 -12.79496 -12.62148 -12.52277 -12.41845 -12.33592 -12.10446 -12.07427 -11.73919 -11.73052 -11.60644 -11.57688 -10.96803 -10.57383 -10.44148 -9.44086 -9.05222 -8.50424 -8.33301 -6.34330 0.20824 0.71399 1.22603 1.31197 1.42167 1.44537 1.54705 1.90205 2.05297 2.29166 2.69977 2.97383 3.03254 3.22019 3.69643 3.79865 3.86913 4.06523 4.16287 4.19684 4.28653 4.37833 4.38959 4.52198 4.52809 4.64260 4.67313 4.70525 4.80200 4.85752 4.89577 4.94265 5.01585 5.02650 5.05355 5.20276 5.23660 5.35874 5.37586 5.43001 5.60529 5.62517 5.73143 5.88409 5.92353 6.02867 6.29617 6.32431 6.49010 7.00718 7.09434 7.48816 7.94577 8.68070 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009212 B = 0.005425 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.723953 B = 5160.516258 C = 7571.948979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.102 3.898 5 N -0.470 5.470 6 C 0.129 3.871 7 C -0.257 4.257 8 C 0.553 3.447 9 O -0.636 6.636 10 N -0.438 5.438 11 C -0.354 4.354 12 H 0.090 0.910 13 C 0.018 3.982 14 N -0.889 5.889 15 Si 0.962 3.038 16 H -0.248 1.248 17 H -0.279 1.279 18 H -0.256 1.256 19 C 0.119 3.881 20 C 0.469 3.531 21 O -0.546 6.546 22 O -0.511 6.511 23 C -0.101 4.101 24 C -0.100 4.100 25 C -0.143 4.143 26 C -0.104 4.104 27 C -0.120 4.120 28 C 0.077 3.923 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.207 0.793 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.420 0.580 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.710 9.657 -3.625 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.124 4.124 3 C -0.195 4.195 4 C -0.018 4.018 5 N -0.151 5.151 6 C -0.002 4.002 7 C -0.266 4.266 8 C 0.347 3.653 9 O -0.525 6.525 10 N -0.157 5.157 11 C -0.481 4.481 12 H 0.107 0.893 13 C -0.187 4.187 14 N -0.525 5.525 15 Si 0.783 3.217 16 H -0.172 1.172 17 H -0.204 1.204 18 H -0.179 1.179 19 C -0.006 4.006 20 C 0.312 3.688 21 O -0.436 6.436 22 O -0.323 6.323 23 C -0.106 4.106 24 C -0.119 4.119 25 C -0.162 4.162 26 C -0.122 4.122 27 C -0.140 4.140 28 C -0.027 4.027 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.223 0.777 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.110 0.890 42 H 0.281 0.719 43 H 0.116 0.884 44 H 0.161 0.839 45 H 0.181 0.819 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.699 9.707 -4.061 15.006 hybrid contribution -0.861 -0.303 1.122 1.446 sum 9.838 9.404 -2.939 13.923 Atomic orbital electron populations 1.21934 0.96031 1.00870 1.02449 1.21468 0.95521 0.98019 0.97404 1.21735 1.01938 0.92924 1.02893 1.22331 1.02784 0.76251 1.00464 1.44220 1.19446 1.08291 1.43124 1.23891 0.88373 0.93742 0.94240 1.19969 0.99601 0.94529 1.12537 1.18113 0.82484 0.86397 0.78294 1.90535 1.78545 1.21725 1.61664 1.42815 1.25786 1.08383 1.38711 1.19542 1.01211 0.85479 1.41870 0.89297 1.26455 0.94525 1.03864 0.93888 1.69762 1.02400 1.38571 1.41722 0.85415 0.78757 0.77475 0.80033 1.17155 1.20401 1.17921 1.20978 0.96607 0.94510 0.88551 1.24730 0.81326 0.74984 0.87760 1.90604 1.25458 1.59022 1.68518 1.84528 1.52359 1.56207 1.39253 1.19202 0.95338 0.94691 1.01330 1.20666 0.97028 0.96212 0.97992 1.21176 0.94710 0.99895 1.00435 1.21170 1.00555 0.90819 0.99690 1.20368 0.93552 1.00513 0.99605 1.18560 0.96479 0.87206 1.00443 0.91650 0.95220 0.92270 0.91089 0.90688 0.91686 0.91761 0.88085 0.86837 0.77696 0.91133 0.84549 0.88990 0.71931 0.88443 0.83907 0.81870 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 8.91 71.98 0.64 -3.34 16 2 C -0.10 -2.10 3.13 -10.79 -0.03 -2.13 16 3 C -0.14 -1.83 9.19 71.98 0.66 -1.16 16 4 C 0.10 2.22 5.37 86.38 0.46 2.68 16 5 N -0.47 -15.39 2.49 -515.18 -1.28 -16.67 16 6 C 0.13 5.32 8.16 83.71 0.68 6.01 16 7 C -0.26 -12.67 6.19 -19.02 -0.12 -12.79 16 8 C 0.55 31.02 7.62 86.49 0.66 31.68 16 9 O -0.64 -38.33 15.69 -4.35 -0.07 -38.40 16 10 N -0.44 -23.51 1.95 -643.95 -1.26 -24.76 16 11 C -0.35 -17.77 6.18 84.07 0.52 -17.25 16 12 H 0.09 4.39 5.95 -2.91 -0.02 4.38 16 13 C 0.02 0.84 5.38 84.93 0.46 1.29 16 14 N -0.89 -44.75 11.40 21.67 0.25 -44.51 16 15 Si 0.96 35.52 29.14 68.60 2.00 37.52 16 16 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 17 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 19 C 0.12 5.97 5.71 85.63 0.49 6.46 16 20 C 0.47 21.71 8.37 71.23 0.60 22.31 16 21 O -0.55 -28.36 17.12 21.97 0.38 -27.98 16 22 O -0.51 -18.08 13.42 -51.39 -0.69 -18.77 16 23 C -0.10 -4.45 6.27 -20.08 -0.13 -4.58 16 24 C -0.10 -4.11 9.86 22.41 0.22 -3.89 16 25 C -0.14 -4.33 10.03 22.28 0.22 -4.11 16 26 C -0.10 -2.53 10.01 22.28 0.22 -2.31 16 27 C -0.12 -3.14 9.97 22.37 0.22 -2.92 16 28 C 0.08 2.69 6.79 38.91 0.26 2.95 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.03 0.97 6.71 -2.39 -0.02 0.95 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.10 2.02 8.11 -2.39 -0.02 2.00 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.21 8.50 4.16 -2.91 -0.01 8.49 16 39 H 0.28 13.10 8.31 -92.70 -0.77 12.33 16 40 H 0.14 6.90 5.93 -2.38 -0.01 6.89 16 41 H 0.09 4.68 7.26 -2.39 -0.02 4.66 16 42 H 0.42 10.24 9.10 -74.06 -0.67 9.57 16 43 H 0.10 4.45 7.48 -2.91 -0.02 4.43 16 44 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 45 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 46 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -75.09 383.82 5.72 -69.37 By element: Atomic # 1 Polarization: 44.95 SS G_CDS: 0.35 Total: 45.30 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.05 Total: 18.90 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.29 Total: -85.94 kcal Atomic # 8 Polarization: -84.77 SS G_CDS: -0.38 Total: -85.15 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.00 Total: 37.52 kcal Total: -75.09 5.72 -69.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736454980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.252 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds