Wall clock time and date at job start Wed Apr 1 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47217 * 2 1 4 4 N 1.46503 * 109.47003 * 120.00347 * 2 1 3 5 5 C 1.46496 * 119.99908 * 299.99328 * 4 2 1 6 6 C 1.50702 * 109.47220 * 270.00314 * 5 4 2 7 7 H 1.08000 * 119.99867 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99654 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00201 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46843 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47049 * 120.00128 * 10 8 6 13 13 H 1.48501 * 109.47390 * 240.00303 * 10 8 6 14 14 C 1.34775 * 119.99901 * 119.99581 * 4 2 1 15 15 O 1.21286 * 119.99961 * 179.97438 * 14 4 2 16 16 C 1.50700 * 120.00204 * 359.97438 * 14 4 2 17 17 N 1.46500 * 109.47157 * 179.97438 * 16 14 4 18 18 C 1.35402 * 124.77734 * 265.00035 * 17 16 14 19 19 C 1.36479 * 109.75972 * 180.02562 * 18 17 16 20 20 C 1.46740 * 126.77669 * 179.97438 * 19 18 17 21 21 O 1.21601 * 119.99911 * 179.97438 * 20 19 18 22 22 O 1.34847 * 120.00316 * 359.97438 * 20 19 18 23 23 C 1.47467 * 106.44206 * 359.74516 * 19 18 17 24 24 C 1.39260 * 134.00241 * 179.50050 * 23 19 18 25 25 C 1.37770 * 119.67231 * 180.47635 * 24 23 19 26 26 C 1.38751 * 120.29263 * 0.25915 * 25 24 23 27 27 C 1.37758 * 120.63751 * 359.97438 * 26 25 24 28 28 C 1.37982 * 124.77068 * 84.99950 * 17 16 14 29 29 H 1.09003 * 109.46725 * 299.99638 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99744 * 1 2 3 31 31 H 1.08994 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46726 * 239.99647 * 2 1 3 33 33 H 1.09006 * 109.47060 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47115 * 299.99803 * 3 2 1 35 35 H 1.08994 * 109.47074 * 60.00250 * 3 2 1 36 36 H 1.08996 * 109.47238 * 30.00410 * 5 4 2 37 37 H 1.08999 * 109.46977 * 150.00245 * 5 4 2 38 38 H 0.97009 * 120.00172 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.46867 * 59.99890 * 16 14 4 40 40 H 1.08996 * 109.47441 * 299.99880 * 16 14 4 41 41 H 1.07995 * 125.12240 * 0.02562 * 18 17 16 42 42 H 0.96698 * 116.99798 * 179.97438 * 22 20 19 43 43 H 1.08002 * 120.16619 * 0.75837 * 24 23 19 44 44 H 1.07994 * 119.85312 * 180.28154 * 25 24 23 45 45 H 1.08000 * 119.67456 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.03690 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6645 -0.1902 2.5267 6 6 2.7034 0.8017 2.9829 7 1 3.5429 1.0361 2.3453 8 6 2.5813 1.4106 4.2139 9 7 1.5587 1.1255 4.9901 10 14 3.8693 2.6396 4.7798 11 1 4.9107 2.7835 3.7308 12 1 3.2253 3.9558 5.0211 13 1 4.4956 2.1570 6.0368 14 6 2.7931 -1.7865 1.0724 15 8 3.1978 -2.3581 2.0627 16 6 3.1567 -2.3017 -0.2963 17 7 3.9994 -3.4925 -0.1619 18 6 5.3532 -3.4875 -0.1883 19 6 5.8223 -4.7602 -0.0371 20 6 7.2278 -5.1812 -0.0113 21 8 7.5081 -6.3558 0.1317 22 8 8.2085 -4.2656 -0.1463 23 6 4.6380 -5.6279 0.1010 24 6 4.4572 -6.9983 0.2710 25 6 3.1820 -7.5122 0.3591 26 6 2.0813 -6.6718 0.2738 27 6 2.2456 -5.3151 0.1008 28 6 3.5252 -4.7769 0.0093 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 0.6906 0.2973 2.4844 37 1 1.6239 -1.0227 3.2291 38 1 1.4730 1.5537 5.8564 39 1 3.7015 -1.5311 -0.8417 40 1 2.2482 -2.5588 -0.8409 41 1 5.9690 -2.6088 -0.3106 42 1 9.1189 -4.5908 -0.1226 43 1 5.3125 -7.6543 0.3380 44 1 3.0385 -8.5739 0.4955 45 1 1.0861 -7.0854 0.3445 46 1 1.3820 -4.6699 0.0352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736463523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:54 Heat of formation + Delta-G solvation = -83.897695 kcal Electronic energy + Delta-G solvation = -30324.526168 eV Core-core repulsion = 26178.945605 eV Total energy + Delta-G solvation = -4145.580562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.71952 -40.89733 -40.48875 -38.14807 -37.52649 -36.89451 -34.99711 -34.07741 -32.45631 -31.57835 -30.21693 -29.94846 -28.20278 -27.86986 -25.23208 -24.50674 -23.74302 -22.88370 -22.25435 -21.18081 -19.82493 -18.99352 -18.62090 -18.57101 -18.27968 -17.42678 -17.06918 -16.59444 -16.58748 -16.34852 -16.24620 -15.88664 -15.41153 -14.90607 -14.88856 -14.84050 -14.47267 -14.42701 -14.14178 -13.95702 -13.64111 -13.36483 -13.29621 -13.13069 -12.85952 -12.78244 -12.63013 -12.60282 -12.52983 -12.49634 -12.21947 -12.10006 -12.05755 -11.66934 -11.55714 -11.51313 -10.96269 -10.62819 -10.54796 -9.48150 -9.28465 -8.81658 -8.20900 -6.32087 -0.09062 0.49860 0.80026 1.34714 1.37738 1.45288 1.48140 1.67958 2.11676 2.24988 2.32287 2.43704 2.92676 3.10265 3.47747 3.55672 3.58366 3.78790 3.94835 4.06845 4.13200 4.17484 4.26659 4.30630 4.40903 4.51548 4.60558 4.72894 4.80167 4.85597 4.90217 5.01598 5.08189 5.09835 5.13576 5.22831 5.42058 5.45569 5.53523 5.59322 5.60163 5.63783 5.64841 5.70104 5.83467 6.01804 6.09187 6.13087 6.69715 6.78880 7.10713 7.27477 7.42341 8.86720 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.003386 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.140677 B = 8266.176476 C = 9303.609842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 C -0.155 4.155 4 N -0.589 5.589 5 C 0.266 3.734 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.263 1.263 12 H -0.272 1.272 13 H -0.289 1.289 14 C 0.477 3.523 15 O -0.585 6.585 16 C 0.091 3.909 17 N -0.448 5.448 18 C 0.169 3.831 19 C -0.267 4.267 20 C 0.563 3.437 21 O -0.561 6.561 22 O -0.508 6.508 23 C -0.085 4.085 24 C -0.096 4.096 25 C -0.133 4.133 26 C -0.104 4.104 27 C -0.125 4.125 28 C 0.079 3.921 29 H 0.035 0.965 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.027 0.973 37 H -0.012 1.012 38 H 0.264 0.736 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.214 0.786 42 H 0.431 0.569 43 H 0.122 0.878 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 -7.108 -19.372 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 C -0.212 4.212 4 N -0.320 5.320 5 C 0.145 3.855 6 C -0.561 4.561 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.187 1.187 12 H -0.198 1.198 13 H -0.216 1.216 14 C 0.264 3.736 15 O -0.465 6.465 16 C -0.033 4.033 17 N -0.127 5.127 18 C 0.035 3.965 19 C -0.276 4.276 20 C 0.411 3.589 21 O -0.454 6.454 22 O -0.321 6.321 23 C -0.088 4.088 24 C -0.115 4.115 25 C -0.152 4.152 26 C -0.122 4.122 27 C -0.145 4.145 28 C -0.023 4.023 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.230 0.770 42 H 0.292 0.708 43 H 0.140 0.860 44 H 0.169 0.831 45 H 0.175 0.825 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.489 -7.224 -18.710 20.112 hybrid contribution 1.194 0.529 1.452 1.953 sum 2.682 -6.694 -17.258 18.704 Atomic orbital electron populations 1.22146 0.94290 1.02425 1.02849 1.21524 0.95348 0.94282 0.86758 1.22102 1.00953 0.95686 1.02504 1.48359 1.48686 1.26369 1.08611 1.18635 0.95326 0.92492 0.79094 1.21691 1.08986 1.23246 1.02160 0.92343 1.25773 0.97656 0.99121 0.96685 1.70055 1.31355 1.44625 1.11115 0.85510 0.79287 0.78807 0.78090 1.18711 1.19785 1.21551 1.21438 0.79143 0.80951 0.92038 1.90754 1.54793 1.59381 1.41570 1.22159 0.99141 0.87448 0.94588 1.43485 1.05595 1.05552 1.58053 1.22734 0.82825 0.98806 0.92144 1.19049 0.89382 0.93971 1.25164 1.19630 0.85466 0.82612 0.71175 1.90836 1.84763 1.20338 1.49486 1.84534 1.20702 1.41947 1.84947 1.18963 0.90896 0.94037 1.04911 1.20735 0.98375 0.92675 0.99676 1.21300 0.91256 1.01266 1.01376 1.21203 1.00326 0.91802 0.98914 1.20371 0.93330 0.96490 1.04323 1.18440 0.95299 0.83536 1.05060 0.94582 0.88328 0.92198 0.85857 0.93260 0.89043 0.94039 0.95467 0.99381 0.92747 0.81867 0.82978 0.76958 0.70783 0.85956 0.83080 0.82499 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.17 71.98 0.66 -2.90 16 2 C 0.12 2.97 3.17 44.99 0.14 3.11 16 3 C -0.15 -3.99 8.47 71.98 0.61 -3.38 16 4 N -0.59 -21.46 2.39 -802.14 -1.91 -23.37 16 5 C 0.27 13.33 4.59 85.63 0.39 13.72 16 6 C -0.52 -28.15 7.83 25.60 0.20 -27.95 16 7 H 0.06 3.08 7.63 -2.91 -0.02 3.06 16 8 C 0.01 0.34 5.46 84.66 0.46 0.80 16 9 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 10 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 14 C 0.48 17.18 7.74 87.66 0.68 17.86 16 15 O -0.58 -28.72 16.00 -3.05 -0.05 -28.77 16 16 C 0.09 1.95 4.74 85.63 0.41 2.35 16 17 N -0.45 -11.93 2.23 -519.30 -1.16 -13.09 16 18 C 0.17 4.35 11.04 83.73 0.92 5.28 16 19 C -0.27 -8.08 6.27 -19.03 -0.12 -8.20 16 20 C 0.56 16.26 8.31 70.04 0.58 16.84 16 21 O -0.56 -19.14 16.95 19.51 0.33 -18.81 16 22 O -0.51 -10.31 13.26 -57.60 -0.76 -11.07 16 23 C -0.08 -2.72 6.27 -20.08 -0.13 -2.85 16 24 C -0.10 -2.84 9.85 22.40 0.22 -2.62 16 25 C -0.13 -3.17 10.03 22.28 0.22 -2.95 16 26 C -0.10 -2.34 10.01 22.28 0.22 -2.12 16 27 C -0.13 -3.25 9.97 22.37 0.22 -3.03 16 28 C 0.08 2.37 6.78 38.91 0.26 2.63 16 29 H 0.03 1.06 6.66 -2.39 -0.02 1.04 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.12 1.74 5.77 -2.38 -0.01 1.73 16 33 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.04 1.42 6.92 -2.39 -0.02 1.41 16 36 H 0.03 1.41 6.43 -2.39 -0.02 1.39 16 37 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 38 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 39 H 0.16 2.13 7.75 -2.39 -0.02 2.11 16 40 H 0.15 2.17 7.79 -2.39 -0.02 2.15 16 41 H 0.21 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.43 4.60 9.11 -74.06 -0.67 3.93 16 43 H 0.12 3.66 7.45 -2.91 -0.02 3.64 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 46 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -86.22 390.71 5.07 -81.15 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.34 Total: 16.48 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.97 Total: 6.61 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -2.79 Total: -91.53 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -0.48 Total: -58.66 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -86.22 5.07 -81.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736463523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.749 kcal (2) G-P(sol) polarization free energy of solvation -86.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds