Wall clock time and date at job start Wed Apr 1 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 O 1.42969 * 109.46997 * 119.99760 * 2 1 3 5 5 C 1.43091 * 113.76978 * 178.79445 * 4 2 1 6 6 C 1.53256 * 108.94169 * 302.02794 * 5 4 2 7 7 N 1.46507 * 109.57020 * 174.33264 * 6 5 4 8 8 C 1.34773 * 119.99804 * 154.58097 * 7 6 5 9 9 O 1.21670 * 119.99930 * 5.22554 * 8 7 6 10 10 C 1.46890 * 120.00299 * 185.22586 * 8 7 6 11 11 C 1.36123 * 125.43733 * 185.44100 * 10 8 7 12 12 C 1.41708 * 107.74285 * 180.27620 * 11 10 8 13 13 C 1.40017 * 133.34539 * 179.78093 * 12 11 10 14 14 C 1.36578 * 119.83047 * 179.97438 * 13 12 11 15 15 C 1.38858 * 120.60016 * 359.95579 * 14 13 12 16 16 C 1.37847 * 120.63016 * 0.02562 * 15 14 13 17 17 C 1.39086 * 119.81722 * 359.97438 * 16 15 14 18 18 N 1.37834 * 133.16514 * 180.02562 * 17 16 15 19 19 C 1.36886 * 125.62429 * 359.97438 * 18 17 16 20 20 H 1.08000 * 120.00535 * 224.08955 * 19 18 17 21 21 C 1.39014 * 119.99679 * 44.08802 * 19 18 17 22 22 N 1.31347 * 120.00075 * 199.16577 * 21 19 18 23 23 Si 1.86810 * 119.99783 * 19.16488 * 21 19 18 24 24 H 1.48499 * 109.46793 * 264.78496 * 23 21 19 25 25 H 1.48491 * 109.47136 * 24.78321 * 23 21 19 26 26 H 1.48501 * 109.47118 * 144.79003 * 23 21 19 27 27 C 1.53256 * 108.84288 * 54.52958 * 6 5 4 28 28 O 1.42970 * 109.47322 * 239.99561 * 2 1 3 29 29 H 1.09001 * 109.47247 * 300.00523 * 1 2 3 30 30 H 1.08999 * 109.46903 * 60.00215 * 1 2 3 31 31 H 1.08995 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46941 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47079 * 299.99677 * 3 2 1 34 34 H 1.09003 * 109.47054 * 59.99891 * 3 2 1 35 35 H 1.09009 * 109.55428 * 182.18872 * 5 4 2 36 36 H 1.08998 * 109.55476 * 61.87103 * 5 4 2 37 37 H 1.08997 * 109.57748 * 294.58326 * 6 5 4 38 38 H 0.96998 * 120.00192 * 334.58017 * 7 6 5 39 39 H 1.07994 * 126.12852 * 0.02562 * 11 10 8 40 40 H 1.08003 * 120.08780 * 359.97438 * 13 12 11 41 41 H 1.08003 * 119.70413 * 179.97438 * 14 13 12 42 42 H 1.07994 * 119.68928 * 180.02562 * 15 14 13 43 43 H 1.08004 * 120.09509 * 179.97438 * 16 15 14 44 44 H 0.97005 * 119.99737 * 174.99093 * 22 21 19 45 45 H 1.08995 * 109.56316 * 65.30859 * 27 6 5 46 46 H 1.09008 * 109.55768 * 185.63250 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6739 1.1674 5 6 3.4331 -0.7515 1.2466 6 6 3.9623 -1.4692 0.0002 7 7 5.4270 -1.4373 0.0003 8 6 6.1217 -2.3871 -0.6567 9 8 5.5351 -3.2152 -1.3279 10 6 7.5872 -2.4228 -0.5624 11 6 8.4027 -3.2619 -1.2580 12 6 9.7382 -2.9806 -0.8767 13 6 10.9771 -3.5161 -1.2492 14 6 12.1242 -3.0245 -0.6945 15 6 12.0745 -1.9958 0.2369 16 6 10.8668 -1.4522 0.6191 17 6 9.6851 -1.9363 0.0680 18 7 8.3584 -1.6067 0.2436 19 6 7.8824 -0.6358 1.0830 20 1 7.0214 -0.8336 1.7043 21 6 8.5072 0.6049 1.1358 22 7 8.3166 1.3928 2.1693 23 14 9.6181 1.1514 -0.2632 24 1 11.0287 0.8275 0.0695 25 1 9.2286 0.4444 -1.5095 26 1 9.4802 2.6166 -0.4612 27 6 3.4332 -0.7515 -1.2463 28 8 2.0066 -0.6740 -1.1673 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.7193 -1.3095 2.1382 36 1 3.8511 0.2541 1.2938 37 1 3.6196 -2.5039 0.0014 38 1 5.8968 -0.7326 0.4731 39 1 8.0879 -4.0108 -1.9696 40 1 11.0255 -4.3160 -1.9734 41 1 13.0787 -3.4394 -0.9830 42 1 12.9907 -1.6179 0.6659 43 1 10.8382 -0.6525 1.3445 44 1 8.8083 2.2259 2.2412 45 1 3.8512 0.2540 -1.2936 46 1 3.7195 -1.3097 -2.1378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754729831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:47 Heat of formation + Delta-G solvation = -74.436874 kcal Electronic energy + Delta-G solvation = -31077.945381 eV Core-core repulsion = 26932.775071 eV Total energy + Delta-G solvation = -4145.170310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56175 -41.68296 -40.18584 -37.80597 -36.88668 -36.52035 -35.41042 -33.44898 -33.10433 -31.29990 -30.63848 -29.62460 -28.36545 -27.28297 -26.76865 -25.11701 -23.45018 -22.84880 -21.93061 -21.42554 -20.80375 -20.16646 -18.84685 -18.37918 -17.90196 -17.61644 -17.09647 -16.80221 -16.63518 -16.43340 -16.13253 -15.90163 -15.77044 -15.08981 -14.97714 -14.76902 -14.68378 -14.55952 -14.45753 -14.16286 -13.85641 -13.68372 -13.67658 -13.23857 -13.19182 -13.10786 -12.84590 -12.72562 -12.49263 -12.37628 -12.29996 -12.17182 -11.99378 -11.62952 -11.54523 -11.34122 -11.27832 -10.69104 -10.46187 -10.16208 -9.07831 -8.87956 -8.65301 -6.62873 -0.08043 0.87410 1.08386 1.17674 1.29546 1.33610 1.89501 1.99719 2.23496 2.36211 2.41773 2.64802 2.76480 3.12869 3.39009 3.52973 3.65967 3.76654 3.83178 3.89707 4.01848 4.15735 4.28409 4.36067 4.41451 4.48723 4.56066 4.59697 4.64986 4.65779 4.66702 4.74707 4.75942 4.79367 4.99790 5.02241 5.10471 5.17039 5.22887 5.25393 5.32623 5.64278 5.69033 5.72397 5.80033 5.95732 6.01278 6.05016 6.35922 6.39339 6.72464 7.08106 7.18267 8.15983 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.003604 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.198398 B = 7766.639819 C = 8875.212592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.244 3.756 3 C -0.205 4.205 4 O -0.387 6.387 5 C 0.057 3.943 6 C 0.083 3.917 7 N -0.710 5.710 8 C 0.596 3.404 9 O -0.569 6.569 10 C -0.040 4.040 11 C -0.156 4.156 12 C -0.145 4.145 13 C -0.075 4.075 14 C -0.152 4.152 15 C -0.111 4.111 16 C -0.140 4.140 17 C 0.045 3.955 18 N -0.292 5.292 19 C -0.384 4.384 20 H 0.110 0.890 21 C 0.070 3.930 22 N -0.845 5.845 23 Si 0.908 3.092 24 H -0.230 1.230 25 H -0.281 1.281 26 H -0.274 1.274 27 C 0.053 3.947 28 O -0.391 6.391 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.420 0.580 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.107 0.893 44 H 0.296 0.704 45 H 0.067 0.933 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 1.354 -2.877 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.168 3.832 3 C -0.262 4.262 4 O -0.306 6.306 5 C -0.020 4.020 6 C -0.022 4.022 7 N -0.371 5.371 8 C 0.385 3.615 9 O -0.450 6.450 10 C -0.153 4.153 11 C -0.184 4.184 12 C -0.150 4.150 13 C -0.093 4.093 14 C -0.171 4.171 15 C -0.130 4.130 16 C -0.160 4.160 17 C -0.068 4.068 18 N 0.041 4.959 19 C -0.510 4.510 20 H 0.127 0.873 21 C -0.143 4.143 22 N -0.475 5.475 23 Si 0.732 3.268 24 H -0.153 1.153 25 H -0.206 1.206 26 H -0.199 1.199 27 C -0.025 4.025 28 O -0.311 6.311 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.265 0.735 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.095 1.199 -2.945 6.006 hybrid contribution 0.883 0.923 -0.022 1.277 sum -4.212 2.122 -2.967 5.572 Atomic orbital electron populations 1.21672 0.87286 1.04187 1.04888 1.23382 0.96270 0.88472 0.75055 1.22847 1.02106 0.95876 1.05379 1.88153 1.20133 1.78787 1.43570 1.22806 0.81175 1.00789 0.97228 1.22083 0.80705 1.01961 0.97495 1.46501 1.06095 1.30233 1.54283 1.17236 0.85291 0.80430 0.78543 1.90721 1.70393 1.41287 1.42569 1.20447 0.91162 1.02599 1.01107 1.20775 0.90690 1.03044 1.03856 1.18396 0.94552 1.00000 1.02068 1.20641 0.89818 0.99374 0.99487 1.20889 0.98838 0.98397 0.98939 1.21130 0.96187 0.97249 0.98484 1.20321 0.90960 1.02255 1.02506 1.18886 0.85838 0.99490 1.02603 1.40264 1.03145 1.24603 1.27892 1.19091 1.19238 0.92136 1.20553 0.87287 1.25769 0.96600 0.94679 0.97290 1.69652 1.38240 1.12976 1.26584 0.86365 0.82245 0.77870 0.80333 1.15310 1.20634 1.19941 1.22968 0.80869 1.00334 0.98313 1.88142 1.20485 1.78797 1.43688 0.88441 0.88598 0.91480 0.92734 0.89024 0.88899 0.87212 0.91054 0.89689 0.73469 0.82919 0.83792 0.82679 0.83561 0.87540 0.89302 0.91491 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.21 71.98 0.66 -1.64 16 2 C 0.24 6.18 1.50 30.60 0.05 6.23 16 3 C -0.20 -4.40 8.11 71.98 0.58 -3.82 16 4 O -0.39 -11.18 10.35 -126.22 -1.31 -12.49 16 5 C 0.06 1.70 6.08 72.07 0.44 2.14 16 6 C 0.08 2.84 2.83 45.16 0.13 2.97 16 7 N -0.71 -27.62 4.89 -445.48 -2.18 -29.79 16 8 C 0.60 26.24 7.74 86.51 0.67 26.91 16 9 O -0.57 -26.48 16.56 -4.25 -0.07 -26.55 16 10 C -0.04 -1.83 6.77 39.91 0.27 -1.56 16 11 C -0.16 -6.68 10.55 22.63 0.24 -6.44 16 12 C -0.15 -6.03 6.16 -21.33 -0.13 -6.16 16 13 C -0.07 -2.45 10.06 22.31 0.22 -2.23 16 14 C -0.15 -4.43 9.97 22.03 0.22 -4.21 16 15 C -0.11 -3.61 10.02 22.33 0.22 -3.38 16 16 C -0.14 -5.75 6.87 22.38 0.15 -5.60 16 17 C 0.04 2.03 5.16 39.06 0.20 2.23 16 18 N -0.29 -13.87 2.38 -331.34 -0.79 -14.66 16 19 C -0.38 -18.51 8.07 84.09 0.68 -17.83 16 20 H 0.11 5.39 6.67 -2.91 -0.02 5.37 16 21 C 0.07 3.34 4.92 84.95 0.42 3.75 16 22 N -0.85 -40.54 13.95 21.67 0.30 -40.24 16 23 Si 0.91 39.15 24.42 68.60 1.68 40.82 16 24 H -0.23 -9.25 5.71 99.48 0.57 -8.68 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 C 0.05 1.69 6.19 72.07 0.45 2.14 16 28 O -0.39 -11.81 10.35 -126.22 -1.31 -13.12 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.33 5.11 -2.39 -0.01 1.31 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.11 3.18 8.14 -2.38 -0.02 3.16 16 36 H 0.07 2.06 6.53 -2.39 -0.02 2.04 16 37 H 0.08 3.18 7.64 -2.39 -0.02 3.16 16 38 H 0.42 16.90 4.66 -92.71 -0.43 16.46 16 39 H 0.15 5.90 8.06 -2.91 -0.02 5.87 16 40 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 41 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.11 4.53 6.02 -2.91 -0.02 4.51 16 44 H 0.30 13.08 8.31 -92.70 -0.77 12.31 16 45 H 0.07 2.02 6.53 -2.39 -0.02 2.00 16 46 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -59.19 363.71 2.25 -56.94 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: 0.45 Total: 45.58 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 5.47 Total: -6.49 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.66 Total: -84.70 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -2.68 Total: -52.16 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.68 Total: 40.82 kcal Total: -59.19 2.25 -56.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754729831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.498 kcal (2) G-P(sol) polarization free energy of solvation -59.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds