Wall clock time and date at job start Wed Apr 1 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46658 * 2 1 4 4 C 1.37962 * 120.07296 * 96.30544 * 3 2 1 5 5 C 1.38348 * 120.14866 * 179.71780 * 4 3 2 6 6 C 1.38383 * 120.30371 * 0.27796 * 5 4 3 7 7 C 1.37930 * 120.14995 * 0.02562 * 6 5 4 8 8 C 1.39610 * 120.07698 * 276.59267 * 3 2 1 9 9 C 1.47725 * 120.15327 * 0.02562 * 8 3 2 10 10 O 1.21472 * 119.99603 * 6.22060 * 9 8 3 11 11 O 1.34710 * 120.00227 * 186.22089 * 9 8 3 12 12 C 1.45198 * 116.99925 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46699 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00389 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00086 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47242 * 90.00258 * 16 15 13 18 18 H 1.08002 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00007 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99978 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47295 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47424 * 119.99543 * 21 19 17 24 24 H 1.48509 * 109.46903 * 239.99573 * 21 19 17 25 25 C 1.46502 * 120.00000 * 359.97438 * 15 13 12 26 26 C 1.53003 * 109.46940 * 89.99851 * 25 15 13 27 27 C 1.47209 * 109.46972 * 179.97438 * 26 25 15 28 28 N 8.57083 * 68.19141 * 257.99129 * 2 1 3 29 29 H 1.09004 * 109.47382 * 60.00110 * 1 2 3 30 30 H 1.09007 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47033 * 299.99406 * 1 2 3 32 32 H 1.09005 * 109.46654 * 240.00379 * 2 1 3 33 33 H 1.08989 * 109.46979 * 120.00104 * 2 1 3 34 34 H 1.08005 * 119.92368 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.84780 * 180.25355 * 5 4 3 36 36 H 1.08001 * 119.92405 * 180.02562 * 6 5 4 37 37 H 1.08003 * 120.07568 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47037 * 299.99789 * 12 11 9 39 39 H 1.08991 * 109.47138 * 59.99752 * 12 11 9 40 40 H 1.09003 * 109.47217 * 210.00258 * 16 15 13 41 41 H 1.09002 * 109.47091 * 329.99577 * 16 15 13 42 42 H 0.96994 * 119.99806 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47369 * 209.99901 * 25 15 13 44 44 H 1.08998 * 109.47436 * 330.00345 * 25 15 13 45 45 H 1.08994 * 109.47464 * 299.99901 * 26 25 15 46 46 H 1.09003 * 109.47296 * 60.00301 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3863 2.0290 1.1867 5 6 2.8530 3.3314 1.1879 6 6 2.9628 4.0349 0.0013 7 6 2.6064 3.4411 -1.1916 8 6 2.1347 2.1268 -1.2001 9 6 1.7509 1.4845 -2.4739 10 8 1.2398 0.3825 -2.4685 11 8 1.9677 2.1208 -3.6413 12 6 1.5649 1.4300 -4.8532 13 6 1.8836 2.2885 -6.0502 14 8 2.3989 3.3756 -5.8968 15 7 1.5959 1.8481 -7.2910 16 6 1.9052 2.6828 -8.4546 17 6 3.2975 2.3720 -8.9399 18 1 3.8928 1.6274 -8.4322 19 6 3.8120 3.0388 -10.0316 20 7 3.0873 3.9458 -10.6496 21 14 5.5377 2.6530 -10.6337 22 1 6.1388 1.6024 -9.7735 23 1 5.4761 2.1694 -12.0364 24 1 6.3704 3.8810 -10.5696 25 6 0.9739 0.5347 -7.4763 26 6 -0.5487 0.6836 -7.4531 27 6 -1.1737 -0.6361 -7.6399 28 7 -1.6541 -1.6556 -7.7833 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.3028 1.4857 2.1164 35 1 3.1327 3.8013 2.1192 36 1 3.3283 5.0511 0.0092 37 1 2.6929 3.9911 -2.1171 38 1 2.1044 0.4859 -4.9297 39 1 0.4932 1.2344 -4.8209 40 1 1.1888 2.4772 -9.2500 41 1 1.8444 3.7343 -8.1739 42 1 3.4491 4.4147 -11.4177 43 1 1.2836 0.1179 -8.4347 44 1 1.2860 -0.1319 -6.6723 45 1 -0.8584 1.1003 -6.4948 46 1 -0.8609 1.3501 -8.2571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770126153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:32 Heat of formation + Delta-G solvation = -84.019168 kcal Electronic energy + Delta-G solvation = -29318.939575 eV Core-core repulsion = 25173.353746 eV Total energy + Delta-G solvation = -4145.585830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93167 -40.80685 -39.74987 -38.06495 -37.55613 -36.71824 -34.90204 -34.82018 -32.55283 -32.22388 -30.71767 -30.34848 -28.44145 -25.65950 -25.37677 -24.57083 -24.30811 -22.58613 -21.51678 -20.29025 -19.16881 -18.86556 -18.40292 -18.04164 -17.72044 -17.58790 -17.06237 -16.67959 -16.29030 -16.17084 -15.97008 -15.74138 -15.29068 -14.90277 -14.80439 -14.62978 -14.43780 -14.26360 -14.08233 -13.80954 -13.70898 -13.60008 -13.56924 -13.19595 -13.09715 -12.97041 -12.73142 -12.67824 -12.55607 -12.54310 -12.24305 -12.17138 -11.97168 -11.80996 -11.67373 -11.62973 -11.06213 -10.69754 -10.59125 -10.02497 -9.74546 -9.58506 -8.18959 -6.30643 -0.30781 0.38202 1.24522 1.39781 1.42705 1.48356 1.52727 1.58325 1.78750 1.82172 2.31583 2.45104 2.77756 3.03656 3.13885 3.54609 3.60311 3.75062 3.85696 3.94504 3.99009 4.08738 4.12678 4.13124 4.33121 4.45351 4.51833 4.53700 4.56302 4.61939 4.78887 4.88399 5.00786 5.01055 5.03551 5.10788 5.13901 5.22288 5.31972 5.36629 5.46085 5.49310 5.56209 5.62601 5.83104 5.93186 6.10839 6.53140 6.59141 6.67350 6.78578 7.24768 7.41884 8.88275 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.002887 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.094678 B = 9696.997329 C =11799.957424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.025 4.025 4 C -0.134 4.134 5 C -0.072 4.072 6 C -0.142 4.142 7 C -0.072 4.072 8 C -0.152 4.152 9 C 0.504 3.496 10 O -0.507 6.507 11 O -0.345 6.345 12 C 0.056 3.944 13 C 0.507 3.493 14 O -0.568 6.568 15 N -0.589 5.589 16 C 0.260 3.740 17 C -0.542 4.542 18 H 0.054 0.946 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.957 3.043 22 H -0.269 1.269 23 H -0.273 1.273 24 H -0.285 1.285 25 C 0.108 3.892 26 C -0.039 4.039 27 C 0.245 3.755 28 N -0.487 5.487 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.043 0.957 41 H 0.008 0.992 42 H 0.266 0.734 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 -4.586 24.091 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.025 4.025 4 C -0.151 4.151 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.090 4.090 8 C -0.153 4.153 9 C 0.350 3.650 10 O -0.398 6.398 11 O -0.261 6.261 12 C -0.021 4.021 13 C 0.294 3.706 14 O -0.446 6.446 15 N -0.321 5.321 16 C 0.140 3.860 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.783 3.217 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.211 1.211 25 C -0.017 4.017 26 C -0.080 4.080 27 C -0.073 4.073 28 N -0.165 5.165 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.151 0.849 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.044 -5.743 23.746 24.946 hybrid contribution 1.058 0.494 -1.196 1.672 sum -3.986 -5.250 22.549 23.493 Atomic orbital electron populations 1.21569 0.94036 1.02081 1.01170 1.20825 0.97049 0.91484 1.03779 1.20247 0.94308 0.96565 0.91424 1.21374 1.00306 0.95926 0.97505 1.21859 0.93998 0.93827 0.99238 1.21479 1.01014 1.01748 0.91738 1.21640 0.94073 0.93260 1.00072 1.19060 1.09943 0.96421 0.89854 1.21593 0.75405 0.83591 0.84376 1.90771 1.41040 1.20229 1.87720 1.86610 1.76270 1.48587 1.14667 1.22938 1.04023 0.94976 0.80173 1.20442 0.78873 0.86711 0.84602 1.90707 1.43880 1.24071 1.85942 1.47987 1.59287 1.19227 1.05598 1.18907 0.95160 0.89870 0.82083 1.21772 1.01238 1.22063 1.12977 0.92782 1.25694 1.01424 0.94726 0.96799 1.70019 1.38687 1.25914 1.21769 0.85520 0.79921 0.77981 0.78305 1.19329 1.19864 1.21067 1.21634 0.90422 0.83965 1.05655 1.19844 0.94078 0.86313 1.07801 1.29116 0.92399 0.94293 0.91453 1.81262 1.10947 1.13321 1.10975 0.94247 0.91812 0.92068 0.90465 0.89262 0.82315 0.81918 0.83128 0.85491 0.86572 0.85331 0.93920 0.97373 0.92513 0.88793 0.87878 0.84915 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.45 71.98 0.68 -1.63 16 2 C -0.09 -1.70 5.32 29.85 0.16 -1.54 16 3 C -0.03 -0.48 5.17 -19.60 -0.10 -0.58 16 4 C -0.13 -1.79 9.66 22.23 0.21 -1.57 16 5 C -0.07 -0.85 10.04 22.33 0.22 -0.62 16 6 C -0.14 -2.24 10.03 22.23 0.22 -2.02 16 7 C -0.07 -1.60 9.62 22.54 0.22 -1.39 16 8 C -0.15 -3.64 5.87 -20.10 -0.12 -3.75 16 9 C 0.50 13.88 7.81 70.33 0.55 14.43 16 10 O -0.51 -14.00 11.49 19.93 0.23 -13.77 16 11 O -0.35 -10.71 9.03 -49.81 -0.45 -11.16 16 12 C 0.06 1.51 4.51 71.24 0.32 1.83 16 13 C 0.51 18.78 7.75 87.66 0.68 19.46 16 14 O -0.57 -27.43 16.08 15.78 0.25 -27.18 16 15 N -0.59 -20.88 2.46 -826.15 -2.03 -22.91 16 16 C 0.26 12.28 5.16 85.63 0.44 12.72 16 17 C -0.54 -28.84 9.39 25.60 0.24 -28.60 16 18 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 19 C 0.01 0.71 5.46 84.65 0.46 1.17 16 20 N -0.92 -52.82 13.29 21.45 0.28 -52.54 16 21 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 C 0.11 2.59 5.17 86.38 0.45 3.04 16 26 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 27 C 0.24 5.43 15.43 89.44 1.38 6.81 16 28 N -0.49 -13.81 18.54 20.01 0.37 -13.44 16 29 H 0.04 0.86 6.76 -2.39 -0.02 0.85 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.74 5.86 -2.38 -0.01 1.73 16 33 H 0.09 1.15 8.04 -2.39 -0.02 1.14 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.13 3.16 7.63 -2.91 -0.02 3.14 16 38 H 0.12 2.74 7.39 -2.39 -0.02 2.73 16 39 H 0.13 2.61 7.18 -2.39 -0.02 2.60 16 40 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 41 H 0.01 0.45 7.42 -2.39 -0.02 0.43 16 42 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 44 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 45 H 0.13 1.78 7.22 -2.39 -0.02 1.76 16 46 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -76.00 398.41 7.88 -68.12 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.00 Total: 10.33 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.19 Total: 17.22 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.37 Total: -88.88 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: 0.03 Total: -52.11 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -76.00 7.88 -68.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770126153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.904 kcal (2) G-P(sol) polarization free energy of solvation -75.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds