Wall clock time and date at job start Wed Apr 1 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47424 * 80.76387 * 3 2 1 5 5 N 1.46508 * 109.47006 * 200.76317 * 3 2 1 6 6 C 1.34773 * 120.00020 * 275.00241 * 5 3 2 7 7 O 1.21579 * 119.99900 * 359.97438 * 6 5 3 8 8 N 1.34781 * 119.99837 * 180.02562 * 6 5 3 9 9 C 1.46498 * 119.99650 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46998 * 179.97438 * 9 8 6 11 11 C 1.38304 * 119.93248 * 269.73342 * 10 9 8 12 12 C 1.38092 * 120.06669 * 179.72607 * 11 10 9 13 13 C 1.38877 * 119.93491 * 0.52186 * 12 11 10 14 14 O 1.35755 * 120.07479 * 179.72932 * 13 12 11 15 15 C 1.34821 * 117.00095 * 174.48535 * 14 13 12 16 16 H 1.08000 * 120.00743 * 5.06002 * 15 14 13 17 17 C 1.38658 * 119.99865 * 185.05678 * 15 14 13 18 18 N 1.31560 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00038 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46897 * 60.00231 * 19 17 15 21 21 H 1.48501 * 109.46865 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47191 * 299.99932 * 19 17 15 23 23 C 1.38878 * 119.85933 * 359.74934 * 13 12 11 24 24 C 1.38096 * 119.93095 * 359.97438 * 23 13 12 25 25 C 1.53000 * 109.47165 * 320.76305 * 3 2 1 26 26 H 1.09001 * 110.33407 * 185.70718 * 25 3 2 27 27 C 1.54477 * 110.37299 * 63.45041 * 25 3 2 28 28 C 1.54503 * 104.06333 * 217.19004 * 27 25 3 29 29 C 1.54486 * 104.06496 * 0.02562 * 28 27 25 30 30 O 1.44433 * 110.37166 * 307.95156 * 25 3 2 31 31 H 4.18737 * 15.03905 * 0.02562 * 4 2 1 32 32 H 0.97000 * 119.99797 * 94.99945 * 5 3 2 33 33 H 0.97000 * 119.99980 * 359.97438 * 8 6 5 34 34 H 1.08994 * 109.47818 * 299.99942 * 9 8 6 35 35 H 1.09006 * 109.47087 * 60.00384 * 9 8 6 36 36 H 1.08001 * 119.96249 * 359.97221 * 11 10 9 37 37 H 1.08009 * 120.03554 * 180.26788 * 12 11 10 38 38 H 0.96998 * 119.99765 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.03449 * 180.02562 * 23 13 12 40 40 H 1.08007 * 119.96545 * 179.97438 * 24 23 13 41 41 H 1.08996 * 110.51149 * 335.84039 * 27 25 3 42 42 H 1.09001 * 110.50621 * 98.40897 * 27 25 3 43 43 H 1.09002 * 110.51388 * 118.64545 * 28 27 25 44 44 H 1.09003 * 110.51240 * 241.21763 * 28 27 25 45 45 H 1.08999 * 110.36853 * 142.80606 * 29 28 27 46 46 H 1.08999 * 110.37078 * 265.14428 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1641 -1.0142 5 7 3.1337 1.2925 0.4897 6 6 3.2619 2.3305 -0.3603 7 8 2.9733 2.1948 -1.5335 8 7 3.7111 3.5187 0.0901 9 6 3.8510 4.6469 -0.8339 10 6 4.3669 5.8487 -0.0850 11 6 3.4771 6.7367 0.4916 12 6 3.9468 7.8357 1.1833 13 6 5.3140 8.0547 1.2904 14 8 5.7787 9.1372 1.9651 15 6 7.1137 9.2293 2.1293 16 1 7.7665 8.5066 1.6624 17 6 7.6488 10.2520 2.8977 18 7 6.8537 11.1322 3.4669 19 14 9.4986 10.3801 3.1246 20 1 10.1492 10.5482 1.8004 21 1 9.8121 11.5514 3.9820 22 1 10.0047 9.1430 3.7715 23 6 6.2048 7.1642 0.7056 24 6 5.7290 6.0639 0.0200 25 6 3.1565 -1.1164 0.9124 26 1 4.2416 -1.0656 1.0026 27 6 2.7261 -2.4958 0.3662 28 6 2.4060 -3.3184 1.6343 29 6 2.6801 -2.3385 2.7967 30 8 2.5390 -1.0235 2.2148 31 1 -1.0500 0.0005 -0.0003 32 1 3.3644 1.4006 1.4256 33 1 3.9418 3.6269 1.0261 34 1 4.5521 4.3834 -1.6257 35 1 2.8803 4.8809 -1.2711 36 1 2.4139 6.5683 0.4041 37 1 3.2515 8.5266 1.6370 38 1 7.2280 11.8474 4.0047 39 1 7.2686 7.3315 0.7875 40 1 6.4213 5.3712 -0.4354 41 1 1.8394 -2.3988 -0.2602 42 1 3.5401 -2.9554 -0.1943 43 1 1.3609 -3.6282 1.6349 44 1 3.0608 -4.1872 1.7014 45 1 1.9507 -2.4819 3.5938 46 1 3.6921 -2.4756 3.1778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773263750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:20 Heat of formation + Delta-G solvation = -42.325174 kcal Electronic energy + Delta-G solvation = -28232.740879 eV Core-core repulsion = 24088.963037 eV Total energy + Delta-G solvation = -4143.777842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38130 -40.81029 -40.25790 -38.55287 -36.61284 -35.58721 -34.29211 -33.61058 -32.91146 -31.84529 -31.55457 -30.56226 -27.73482 -26.92911 -25.71010 -23.64183 -23.27753 -22.54244 -22.14293 -21.73272 -19.89382 -19.65889 -19.34346 -18.81084 -17.83843 -17.20483 -16.75037 -16.62374 -16.46956 -16.33633 -16.02273 -15.97681 -15.59401 -15.43852 -15.22936 -14.92919 -14.62580 -14.47310 -14.38112 -14.15612 -13.71289 -13.65319 -13.29573 -13.01351 -12.67683 -12.54083 -12.49299 -12.38236 -12.21768 -12.16346 -12.14110 -11.72203 -11.57961 -11.26398 -11.20014 -11.12617 -10.79395 -10.74816 -10.54149 -9.89996 -9.79994 -9.01874 -8.47664 -6.16026 0.51820 0.58198 1.36186 1.38799 1.47533 1.52212 1.90710 2.09854 2.17692 2.22325 2.80928 2.86475 3.13189 3.36499 3.42107 3.48681 3.64931 3.82512 3.88204 4.01739 4.04109 4.17093 4.18003 4.31482 4.42850 4.47029 4.48191 4.57330 4.74623 4.75147 4.81225 4.87380 4.98999 5.04426 5.06105 5.11131 5.14704 5.17030 5.27114 5.36403 5.46813 5.52685 5.69231 5.75981 5.84967 5.96043 6.01693 6.16494 6.69717 6.96876 7.03528 7.53451 7.76157 8.74864 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.001795 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.910949 B =15597.292218 C =16390.582819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.216 4.216 3 C 0.280 3.720 4 H 0.113 0.887 5 N -0.728 5.728 6 C 0.704 3.296 7 O -0.630 6.630 8 N -0.729 5.729 9 C 0.204 3.796 10 C -0.182 4.182 11 C -0.044 4.044 12 C -0.205 4.205 13 C 0.123 3.877 14 O -0.229 6.229 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.256 1.256 23 C -0.243 4.243 24 C -0.043 4.043 25 C 0.075 3.925 26 H 0.101 0.899 27 C -0.148 4.148 28 C -0.148 4.148 29 C 0.038 3.962 30 O -0.388 6.388 31 H 0.240 0.760 32 H 0.412 0.588 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.273 0.727 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 -30.089 -3.866 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.218 4.218 3 C 0.175 3.825 4 H 0.130 0.870 5 N -0.383 5.383 6 C 0.404 3.596 7 O -0.511 6.511 8 N -0.384 5.384 9 C 0.081 3.919 10 C -0.183 4.183 11 C -0.062 4.062 12 C -0.225 4.225 13 C 0.072 3.928 14 O -0.135 6.135 15 C -0.490 4.490 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.263 4.263 24 C -0.062 4.062 25 C 0.017 3.983 26 H 0.119 0.881 27 C -0.186 4.186 28 C -0.186 4.186 29 C -0.038 4.038 30 O -0.308 6.308 31 H 0.257 0.743 32 H 0.249 0.751 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.046 -29.622 -4.610 30.795 hybrid contribution 0.634 0.743 1.056 1.438 sum -6.413 -28.879 -3.555 29.795 Atomic orbital electron populations 1.25630 0.96813 0.98008 1.00262 1.23593 0.95294 1.02048 1.00841 1.17831 0.83610 0.82039 0.99053 0.86953 1.45011 1.70680 1.09993 1.12601 1.16080 0.77957 0.80893 0.84685 1.90891 1.58927 1.83945 1.17361 1.45255 1.70287 1.09279 1.13601 1.19734 1.00733 0.81371 0.90080 1.19482 0.93097 0.98919 1.06775 1.20870 1.00043 0.91705 0.93613 1.20437 0.91993 1.02062 1.07975 1.19988 0.94327 0.87125 0.91369 1.83948 1.25723 1.37930 1.65923 1.21799 0.79452 1.14859 1.32876 0.87837 1.26601 1.06042 0.94456 0.94934 1.70178 1.37968 1.15371 1.32148 0.84652 0.73613 0.78771 0.79237 1.18180 1.19804 1.18037 1.21253 0.99923 0.98685 1.06404 1.20950 0.95262 0.95020 0.94924 1.23325 0.97985 0.93704 0.83319 0.88135 1.22966 1.03162 0.93508 0.98942 1.22907 1.03281 0.99068 0.93347 1.23610 1.02390 0.81210 0.96631 1.89181 1.79890 1.32065 1.29623 0.74310 0.75123 0.75700 0.91024 0.91414 0.83779 0.86767 0.91819 0.86036 0.84099 0.91069 0.88064 0.90773 0.88453 0.88595 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 19.25 74.32 1.43 -2.29 16 2 C -0.22 -4.75 11.10 31.12 0.35 -4.40 16 3 C 0.28 5.30 2.38 43.18 0.10 5.40 16 4 H 0.11 2.26 7.58 -2.39 -0.02 2.24 16 5 N -0.73 -14.56 5.04 -466.58 -2.35 -16.91 16 6 C 0.70 18.13 8.51 179.05 1.52 19.66 16 7 O -0.63 -21.04 16.00 -3.96 -0.06 -21.10 16 8 N -0.73 -16.77 5.55 -482.30 -2.68 -19.45 16 9 C 0.20 5.15 5.80 85.63 0.50 5.64 16 10 C -0.18 -5.30 5.25 -19.83 -0.10 -5.40 16 11 C -0.04 -1.39 9.69 22.25 0.22 -1.18 16 12 C -0.21 -8.36 9.99 22.39 0.22 -8.13 16 13 C 0.12 5.88 6.65 22.58 0.15 6.03 16 14 O -0.23 -13.46 9.76 -22.70 -0.22 -13.68 16 15 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 16 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 17 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 18 N -0.92 -55.59 13.67 21.61 0.30 -55.30 16 19 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 C -0.24 -10.00 9.17 22.39 0.21 -9.79 16 24 C -0.04 -1.37 9.69 22.25 0.22 -1.16 16 25 C 0.07 1.00 3.10 31.10 0.10 1.09 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 C -0.15 -1.45 6.46 31.61 0.20 -1.25 16 28 C -0.15 -1.14 7.09 31.61 0.22 -0.92 16 29 C 0.04 0.38 7.63 72.49 0.55 0.93 16 30 O -0.39 -6.30 10.69 -148.98 -1.59 -7.89 16 31 H 0.24 2.94 7.80 -4.42 -0.03 2.91 16 32 H 0.41 6.76 8.54 -92.71 -0.79 5.97 16 33 H 0.41 8.10 8.48 -92.71 -0.79 7.32 16 34 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 35 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 36 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 39 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 41 H 0.07 0.87 6.98 -2.39 -0.02 0.86 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -76.78 396.06 1.86 -74.93 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.55 Total: 34.88 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 6.99 Total: -19.38 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.74 Total: -91.66 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.88 Total: -42.67 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.78 1.86 -74.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773263750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.604 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds