Wall clock time and date at job start Wed Apr 1 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46562 * 148.51232 * 3 2 1 5 5 N 1.46496 * 109.47566 * 28.51276 * 3 2 1 6 6 C 1.34773 * 120.00083 * 84.99480 * 5 3 2 7 7 O 1.21589 * 119.99885 * 0.02562 * 6 5 3 8 8 N 1.34773 * 120.00383 * 179.72334 * 6 5 3 9 9 C 1.46501 * 120.00292 * 180.27703 * 8 6 5 10 10 C 1.50703 * 109.47019 * 180.02562 * 9 8 6 11 11 C 1.38295 * 119.93454 * 269.72601 * 10 9 8 12 12 C 1.38097 * 120.07260 * 179.72498 * 11 10 9 13 13 C 1.38879 * 119.92739 * 0.52813 * 12 11 10 14 14 O 1.35758 * 120.06985 * 179.72291 * 13 12 11 15 15 C 1.34825 * 117.00228 * 174.48810 * 14 13 12 16 16 H 1.08005 * 119.99917 * 5.06291 * 15 14 13 17 17 C 1.38646 * 120.00270 * 185.05929 * 15 14 13 18 18 N 1.31558 * 120.00564 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00092 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47169 * 89.99510 * 19 17 15 21 21 H 1.48502 * 109.47182 * 210.00116 * 19 17 15 22 22 H 1.48503 * 109.46908 * 330.00135 * 19 17 15 23 23 C 1.38874 * 119.86342 * 359.75140 * 13 12 11 24 24 C 1.38101 * 119.93081 * 359.97438 * 23 13 12 25 25 C 1.53000 * 109.46868 * 268.50974 * 3 2 1 26 26 H 1.09001 * 110.33492 * 302.25171 * 25 3 2 27 27 C 1.54480 * 110.36905 * 180.02562 * 25 3 2 28 28 C 1.54503 * 104.06323 * 217.19145 * 27 25 3 29 29 C 1.54476 * 104.06610 * 0.02562 * 28 27 25 30 30 O 1.44421 * 110.37287 * 64.62505 * 25 3 2 31 31 H 4.18734 * 15.03960 * 359.97438 * 4 2 1 32 32 H 0.96995 * 120.00062 * 264.99965 * 5 3 2 33 33 H 0.97005 * 119.99710 * 0.28142 * 8 6 5 34 34 H 1.09000 * 109.47278 * 299.99830 * 9 8 6 35 35 H 1.08998 * 109.46978 * 60.00851 * 9 8 6 36 36 H 1.08000 * 119.96328 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.04058 * 180.27383 * 12 11 10 38 38 H 0.97001 * 120.00814 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03756 * 180.02562 * 23 13 12 40 40 H 1.08002 * 119.96608 * 180.02562 * 24 23 13 41 41 H 1.08992 * 110.51343 * 335.84112 * 27 25 3 42 42 H 1.09005 * 110.50714 * 98.41261 * 27 25 3 43 43 H 1.08998 * 110.51380 * 118.64968 * 28 27 25 44 44 H 1.09003 * 110.51269 * 241.35843 * 28 27 25 45 45 H 1.09000 * 110.37480 * 142.80484 * 29 28 27 46 46 H 1.09000 * 110.37902 * 265.14711 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.8772 -0.5368 5 7 3.1350 -1.2127 -0.6593 6 6 3.2636 -1.2458 -2.0005 7 8 2.9743 -0.2683 -2.6632 8 7 3.7188 -2.3601 -2.6066 9 6 3.8644 -2.3939 -4.0640 10 6 4.3862 -3.7434 -4.4855 11 6 5.7492 -3.9572 -4.5810 12 6 6.2307 -5.1944 -4.9615 13 6 5.3442 -6.2212 -5.2590 14 8 5.8143 -7.4369 -5.6387 15 6 4.9066 -8.4204 -5.8019 16 1 3.8526 -8.2030 -5.7115 17 6 5.3263 -9.7110 -6.0859 18 7 4.4407 -10.6706 -6.2457 19 14 7.1494 -10.0873 -6.2418 20 1 7.6913 -10.4693 -4.9130 21 1 7.3437 -11.2080 -7.1965 22 1 7.8625 -8.8836 -6.7397 23 6 3.9760 -6.0018 -5.1677 24 6 3.5009 -4.7640 -4.7812 25 6 3.1559 0.0384 1.4420 26 1 2.7675 0.9163 1.9583 27 6 4.7005 0.0404 1.4663 28 6 5.0579 -0.8339 2.6890 29 6 3.6870 -1.2613 3.2585 30 8 2.7770 -1.1672 2.1410 31 1 -1.0500 -0.0011 0.0001 32 1 3.3660 -1.9924 -0.1306 33 1 3.9499 -3.1399 -2.0778 34 1 2.8950 -2.2179 -4.5302 35 1 4.5644 -1.6194 -4.3772 36 1 6.4380 -3.1569 -4.3538 37 1 7.2953 -5.3620 -5.0316 38 1 4.7343 -11.5735 -6.4448 39 1 3.2841 -6.7984 -5.3980 40 1 2.4369 -4.5928 -4.7096 41 1 5.0974 -0.4009 0.5521 42 1 5.0791 1.0544 1.5955 43 1 5.6315 -1.7075 2.3793 44 1 5.6132 -0.2526 3.4251 45 1 3.7319 -2.2863 3.6267 46 1 3.3792 -0.5842 4.0552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773263751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:24 Heat of formation + Delta-G solvation = -17.218088 kcal Electronic energy + Delta-G solvation = -28565.281290 eV Core-core repulsion = 24422.592172 eV Total energy + Delta-G solvation = -4142.689117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58389 -39.60299 -39.16352 -37.11879 -35.71706 -34.36589 -32.74611 -32.51245 -32.37380 -30.64188 -30.35738 -29.59074 -26.55514 -25.74811 -24.38815 -22.62969 -22.18154 -21.46777 -21.12434 -20.59947 -18.69501 -18.63470 -17.97610 -17.39311 -17.04218 -16.56865 -15.99867 -15.61767 -15.46284 -14.96658 -14.82730 -14.54065 -14.19485 -14.16494 -14.04685 -13.92708 -13.82339 -13.37641 -12.98043 -12.87045 -12.71485 -12.27858 -12.21963 -12.06867 -11.90952 -11.74811 -11.47398 -11.13617 -10.95734 -10.84741 -10.78127 -10.76869 -10.43018 -10.23055 -10.22069 -10.16109 -9.50783 -9.47957 -8.95629 -8.86286 -8.37600 -7.48501 -6.50063 -4.17094 1.88020 2.03060 2.33958 2.67910 3.10347 3.16684 3.19596 3.20890 3.34389 3.39031 3.96652 4.12531 4.16328 4.23762 4.42185 4.44875 4.50573 4.69001 4.74774 4.78311 4.92443 5.01813 5.10381 5.15071 5.20936 5.32980 5.37889 5.38661 5.53891 5.57097 5.61020 5.74665 5.77233 5.87787 6.03345 6.19864 6.25602 6.37935 6.45608 6.55146 6.68113 6.83097 6.97059 7.13262 7.19747 7.47894 7.50068 7.70706 7.94066 7.99928 8.57609 8.84467 9.45153 10.57109 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.001991 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.771048 B =14059.252642 C =14658.058830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.195 4.195 3 C 0.286 3.714 4 H 0.121 0.879 5 N -0.735 5.735 6 C 0.703 3.297 7 O -0.593 6.593 8 N -0.736 5.736 9 C 0.197 3.803 10 C -0.205 4.205 11 C -0.055 4.055 12 C -0.196 4.196 13 C 0.167 3.833 14 O -0.213 6.213 15 C -0.391 4.391 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.876 5.876 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.051 4.051 25 C 0.073 3.927 26 H 0.087 0.913 27 C -0.153 4.153 28 C -0.155 4.155 29 C 0.043 3.957 30 O -0.364 6.364 31 H 0.216 0.784 32 H 0.404 0.596 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.281 0.719 39 H 0.134 0.866 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 20.739 17.871 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.197 4.197 3 C 0.180 3.820 4 H 0.138 0.862 5 N -0.392 5.392 6 C 0.403 3.597 7 O -0.472 6.472 8 N -0.391 5.391 9 C 0.074 3.926 10 C -0.207 4.207 11 C -0.074 4.074 12 C -0.215 4.215 13 C 0.114 3.886 14 O -0.117 6.117 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.513 5.513 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.070 4.070 25 C 0.015 3.985 26 H 0.105 0.895 27 C -0.191 4.191 28 C -0.193 4.193 29 C -0.034 4.034 30 O -0.282 6.282 31 H 0.233 0.767 32 H 0.239 0.761 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.514 21.143 17.053 27.168 hybrid contribution 0.626 -1.084 0.471 1.338 sum 0.112 20.059 17.524 26.636 Atomic orbital electron populations 1.24900 0.95878 0.99128 1.00135 1.23241 0.94536 1.01303 1.00616 1.17574 0.83704 0.89663 0.91071 0.86183 1.45032 1.71401 1.17100 1.05632 1.16009 0.78274 0.83842 0.81555 1.90918 1.57311 1.35056 1.63903 1.45464 1.70287 1.14742 1.08591 1.19854 1.00566 0.94395 0.77792 1.19294 0.93639 0.95444 1.12300 1.20533 0.94230 0.95514 0.97128 1.20210 0.98809 0.92644 1.09838 1.19186 0.92051 0.86050 0.91358 1.83574 1.37288 1.16174 1.74688 1.20786 0.89747 0.86402 1.49748 0.87496 1.24488 1.00017 0.93886 0.95566 1.69641 1.34304 1.01731 1.45594 0.86174 0.83477 0.78629 0.78591 1.19822 1.20684 1.18317 1.21281 0.95535 0.98469 1.09041 1.20718 0.98404 0.92089 0.95790 1.23302 0.94209 0.89781 0.91248 0.89516 1.23014 0.94714 1.01471 0.99881 1.22945 0.98180 1.00554 0.97628 1.23452 0.87967 1.02426 0.89544 1.89202 1.55613 1.42354 1.41079 0.76670 0.76091 0.76796 0.91628 0.91567 0.86756 0.86388 0.90906 0.84808 0.87087 0.89650 0.89959 0.90291 0.90366 0.88762 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.20 -2.29 12.62 -37.12 -0.47 -2.76 16 3 C 0.29 2.84 2.27 -70.72 -0.16 2.68 16 4 H 0.12 1.22 7.58 -51.93 -0.39 0.83 16 5 N -0.74 -7.74 4.12 -61.45 -0.25 -7.99 16 6 C 0.70 9.47 8.51 -86.92 -0.74 8.73 16 7 O -0.59 -10.15 16.01 5.29 0.08 -10.07 16 8 N -0.74 -9.14 5.55 -66.41 -0.37 -9.51 16 9 C 0.20 2.70 5.80 -5.19 -0.03 2.67 16 10 C -0.21 -3.14 5.25 -104.58 -0.55 -3.69 16 11 C -0.06 -0.86 9.69 -39.61 -0.38 -1.24 16 12 C -0.20 -3.62 9.99 -39.40 -0.39 -4.01 16 13 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 14 O -0.21 -5.41 8.59 0.04 0.00 -5.41 16 15 C -0.39 -10.70 9.95 30.88 0.31 -10.40 16 16 H 0.11 2.99 5.44 -52.48 -0.29 2.70 16 17 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 18 N -0.88 -24.74 13.96 55.48 0.77 -23.96 16 19 Si 0.91 21.08 28.62 -169.99 -4.86 16.22 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 23 C -0.22 -4.58 9.17 -39.40 -0.36 -4.94 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 C 0.07 0.54 2.99 -25.95 -0.08 0.46 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 C -0.15 -0.88 6.53 -25.17 -0.16 -1.05 16 28 C -0.16 -0.76 7.09 -25.17 -0.18 -0.94 16 29 C 0.04 0.25 7.63 37.93 0.29 0.54 16 30 O -0.36 -3.18 10.46 -35.23 -0.37 -3.54 16 31 H 0.22 1.56 7.80 -54.09 -0.42 1.13 16 32 H 0.40 3.68 8.08 -40.82 -0.33 3.35 16 33 H 0.40 4.37 8.48 -40.82 -0.35 4.02 16 34 H 0.07 0.94 8.08 -51.93 -0.42 0.53 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 38 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.08 0.57 7.20 -51.93 -0.37 0.20 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -32.30 394.91 -8.35 -40.66 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.23 Total: 9.21 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.08 Total: -11.54 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.15 Total: -41.46 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.28 Total: -19.03 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.86 Total: 16.22 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.30 -8.35 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773263751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.437 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds