Wall clock time and date at job start Wed Apr 1 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.27936 * 118.23665 * 2 1 4 4 C 1.31135 * 124.24533 * 179.97438 * 3 2 1 5 5 C 1.47500 * 120.40053 * 180.02562 * 4 3 2 6 6 O 1.21505 * 120.00477 * 179.97438 * 5 4 3 7 7 O 1.34769 * 119.99984 * 359.97438 * 5 4 3 8 8 C 1.45197 * 117.00215 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47269 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47077 * 300.00055 * 9 8 7 11 11 C 1.53009 * 109.46990 * 59.99787 * 9 8 7 12 12 C 1.52993 * 109.47256 * 180.02562 * 9 8 7 13 13 C 1.50708 * 109.47292 * 180.02562 * 12 9 8 14 14 H 1.07996 * 119.99602 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00096 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99928 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99957 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47045 * 89.99656 * 17 15 13 19 19 H 1.48499 * 109.47160 * 209.99957 * 17 15 13 20 20 H 1.48497 * 109.46987 * 329.99972 * 17 15 13 21 21 C 1.47206 * 119.20380 * 359.97438 * 4 3 2 22 22 C 1.39053 * 122.79513 * 180.02562 * 21 4 3 23 23 C 1.37895 * 119.39367 * 179.97438 * 22 21 4 24 24 C 1.38861 * 120.79463 * 0.02562 * 23 22 21 25 25 C 1.37872 * 120.74314 * 359.97438 * 24 23 22 26 26 C 1.39132 * 119.33811 * 0.02562 * 25 24 23 27 27 C 1.34880 * 118.24251 * 180.02562 * 2 1 3 28 28 O 1.21735 * 120.77122 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47343 * 269.98303 * 1 2 3 30 30 H 1.09007 * 109.47039 * 29.98359 * 1 2 3 31 31 H 1.08998 * 109.46913 * 149.97821 * 1 2 3 32 32 H 1.09002 * 109.46877 * 300.00226 * 8 7 5 33 33 H 1.08998 * 109.46797 * 60.00384 * 8 7 5 34 34 H 1.09007 * 109.46974 * 60.00292 * 10 9 8 35 35 H 1.09004 * 109.47098 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47369 * 300.00101 * 10 9 8 37 37 H 1.08999 * 109.46465 * 60.00263 * 11 9 8 38 38 H 1.09002 * 109.46476 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47137 * 300.00078 * 11 9 8 40 40 H 1.08999 * 109.47056 * 299.99458 * 12 9 8 41 41 H 1.08995 * 109.47487 * 59.99520 * 12 9 8 42 42 H 0.96995 * 119.99664 * 180.02562 * 16 15 13 43 43 H 1.08005 * 120.30506 * 0.26856 * 22 21 4 44 44 H 1.08002 * 119.60035 * 179.97438 * 23 22 21 45 45 H 1.08004 * 119.63048 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.33330 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1271 0.0000 4 6 3.3744 1.2644 0.0005 5 6 3.9836 2.6077 0.0010 6 8 5.1928 2.7266 0.0019 7 8 3.1989 3.7034 0.0005 8 6 3.8669 4.9926 0.0016 9 6 2.8207 6.1091 0.0014 10 6 1.9466 5.9887 -1.2485 11 6 1.9447 5.9873 1.2500 12 6 3.5246 7.4675 0.0020 13 6 2.4941 8.5672 0.0025 14 1 1.4424 8.3217 0.0028 15 6 2.8940 9.8867 0.0035 16 7 1.9948 10.8464 0.0044 17 14 4.7131 10.3113 0.0037 18 1 5.1950 10.4249 -1.3963 19 1 4.9196 11.6040 0.7048 20 1 5.4708 9.2425 0.7028 21 6 4.2232 0.0617 0.0016 22 6 5.6125 0.1203 0.0027 23 6 6.3394 -1.0515 0.0043 24 6 5.7005 -2.2844 0.0043 25 6 4.3241 -2.3649 0.0032 26 6 3.5727 -1.1939 0.0016 27 6 2.1033 -1.1882 -0.0005 28 8 1.4765 -2.2319 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4893 5.0785 0.8923 33 1 4.4911 5.0791 -0.8877 34 1 1.4451 5.0208 -1.2493 35 1 1.2010 6.7838 -1.2484 36 1 2.5706 6.0753 -2.1380 37 1 2.5676 6.0731 2.1404 38 1 1.1998 6.7830 1.2501 39 1 1.4433 5.0196 1.2491 40 1 4.1475 7.5535 0.8923 41 1 4.1483 7.5539 -0.8876 42 1 2.2762 11.7746 0.0048 43 1 6.1177 1.0750 0.0071 44 1 7.4186 -1.0098 0.0048 45 1 6.2883 -3.1904 0.0060 46 1 3.8341 -3.3273 0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798877939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:50 Heat of formation + Delta-G solvation = -47.787442 kcal Electronic energy + Delta-G solvation = -29801.013404 eV Core-core repulsion = 25656.998700 eV Total energy + Delta-G solvation = -4144.014704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29895 -40.38181 -39.03421 -38.32598 -37.34412 -35.58626 -34.01224 -32.31043 -31.82146 -31.11726 -28.55997 -27.90618 -26.81156 -26.44661 -25.80934 -24.07672 -23.35970 -22.43062 -21.53940 -19.58601 -18.98909 -18.26909 -17.64228 -17.18485 -17.06953 -16.83060 -16.47662 -16.22512 -15.75694 -15.10139 -14.81939 -14.35086 -14.21416 -14.05117 -13.97826 -13.70146 -13.31221 -13.26306 -12.95169 -12.72451 -12.64142 -12.47739 -12.43578 -12.28342 -12.15805 -11.82386 -11.38352 -11.05730 -10.98825 -10.61268 -10.54001 -10.43721 -10.38496 -10.24611 -10.14269 -9.87259 -9.75785 -9.57789 -9.54902 -9.01253 -8.65090 -8.54976 -6.05076 -4.02561 0.02479 0.18338 1.13188 1.68947 2.14026 2.46120 2.65180 3.29714 3.37872 3.39097 3.40552 3.44270 3.97580 4.23950 4.34986 4.43884 4.60316 4.74036 4.78336 4.89869 4.91230 5.07244 5.17904 5.24411 5.26114 5.31246 5.37865 5.38282 5.56037 5.64637 5.69507 5.84000 5.93580 5.97416 6.07202 6.24797 6.29845 6.50555 6.50758 6.65697 6.66989 6.95016 7.02244 7.06324 7.07876 7.19428 7.33118 7.53763 7.74446 7.79677 8.52290 8.99673 9.56855 11.07627 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002515 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.872397 B =11132.448465 C =12444.648826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.361 5.361 3 N -0.155 5.155 4 C 0.064 3.936 5 C 0.542 3.458 6 O -0.498 6.498 7 O -0.325 6.325 8 C 0.074 3.926 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.128 4.128 12 C -0.003 4.003 13 C -0.509 4.509 14 H 0.080 0.920 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.029 4.029 22 C -0.099 4.099 23 C -0.085 4.085 24 C -0.118 4.118 25 C -0.053 4.053 26 C -0.141 4.141 27 C 0.514 3.486 28 O -0.500 6.500 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.171 0.829 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -26.811 -0.064 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.183 5.183 3 N 0.019 4.981 4 C -0.113 4.113 5 C 0.384 3.616 6 O -0.385 6.385 7 O -0.238 6.238 8 C 0.001 3.999 9 C -0.048 4.048 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.040 4.040 13 C -0.547 4.547 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.032 4.032 22 C -0.118 4.118 23 C -0.103 4.103 24 C -0.137 4.137 25 C -0.071 4.071 26 C -0.148 4.148 27 C 0.308 3.692 28 O -0.374 6.374 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.188 0.812 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.264 -26.702 -0.059 26.901 hybrid contribution 1.670 -0.066 0.002 1.671 sum 4.934 -26.768 -0.058 27.219 Atomic orbital electron populations 1.22265 0.73133 1.05794 1.04826 1.46232 1.09830 1.01430 1.60764 1.70445 1.12381 1.11140 1.04141 1.21431 0.87454 0.91948 1.10510 1.19753 0.84679 0.83947 0.73229 1.90722 1.14580 1.86495 1.46663 1.86665 1.40100 1.15046 1.82031 1.23669 0.96153 0.77790 1.02244 1.20586 0.94524 0.92814 0.96898 1.21743 0.99951 1.00941 0.95934 1.21739 0.99939 1.00941 0.95935 1.19631 0.96574 0.91308 0.96523 1.21035 0.94204 0.89032 1.50446 0.90198 1.24991 0.97136 0.96524 0.94762 1.69896 1.33280 0.99759 1.51225 0.86867 0.86522 0.77927 0.78499 1.20348 1.21458 1.19039 1.19178 0.94724 0.89979 0.99357 1.22019 0.91993 1.01341 0.96491 1.21560 1.00955 0.91905 0.95891 1.21371 0.94025 0.98555 0.99791 1.20962 0.93631 0.97140 0.95412 1.19820 0.91798 0.94385 1.08755 1.19131 0.88672 0.83916 0.77461 1.90870 1.68431 1.30178 1.47922 0.89861 0.87978 0.88221 0.91157 0.91155 0.93790 0.91010 0.93817 0.93820 0.91006 0.93769 0.96332 0.96769 0.92757 0.81181 0.84532 0.84623 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.52 59.85 0.63 1.24 16 2 N -0.36 -4.06 3.62 -68.29 -0.25 -4.31 16 3 N -0.15 -1.93 10.50 34.50 0.36 -1.57 16 4 C 0.06 0.83 7.03 -80.75 -0.57 0.26 16 5 C 0.54 7.75 7.94 34.51 0.27 8.02 16 6 O -0.50 -7.42 13.48 -19.27 -0.26 -7.68 16 7 O -0.32 -5.00 8.71 -40.68 -0.35 -5.35 16 8 C 0.07 1.22 4.33 37.16 0.16 1.38 16 9 C -0.05 -0.90 0.61 -154.51 -0.09 -1.00 16 10 C -0.13 -2.33 8.08 37.16 0.30 -2.03 16 11 C -0.13 -2.33 8.08 37.16 0.30 -2.03 16 12 C 0.00 -0.07 3.11 -27.88 -0.09 -0.15 16 13 C -0.51 -13.54 8.20 -34.44 -0.28 -13.83 16 14 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 15 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 16 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 17 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 21 C -0.03 -0.34 5.90 -104.75 -0.62 -0.96 16 22 C -0.10 -1.00 9.36 -39.40 -0.37 -1.37 16 23 C -0.08 -0.64 10.01 -39.48 -0.40 -1.03 16 24 C -0.12 -0.82 10.01 -39.48 -0.40 -1.21 16 25 C -0.05 -0.46 9.71 -39.38 -0.38 -0.85 16 26 C -0.14 -1.59 5.90 -104.83 -0.62 -2.20 16 27 C 0.51 6.20 7.67 -12.69 -0.10 6.10 16 28 O -0.50 -6.64 16.15 5.16 0.08 -6.55 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.10 0.70 7.32 -51.93 -0.38 0.32 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.72 7.68 -51.92 -0.40 0.32 16 35 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 39 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 40 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.17 1.85 5.22 -52.48 -0.27 1.58 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 46 H 0.14 1.08 7.87 -52.49 -0.41 0.67 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -31.68 379.54 -7.11 -38.79 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.18 Total: -1.41 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.34 Total: -7.87 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.89 Total: -32.10 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.53 Total: -19.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.68 -7.11 -38.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.998 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds