Wall clock time and date at job start Wed Apr 1 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.27936 * 118.23665 * 2 1 4 4 C 1.31135 * 124.24533 * 179.97438 * 3 2 1 5 5 C 1.47500 * 120.40053 * 180.02562 * 4 3 2 6 6 O 1.21505 * 120.00477 * 179.97438 * 5 4 3 7 7 O 1.34769 * 119.99984 * 359.97438 * 5 4 3 8 8 C 1.45197 * 117.00215 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47269 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47077 * 300.00055 * 9 8 7 11 11 C 1.53009 * 109.46990 * 59.99787 * 9 8 7 12 12 C 1.52993 * 109.47256 * 180.02562 * 9 8 7 13 13 C 1.50708 * 109.47292 * 180.02562 * 12 9 8 14 14 H 1.07996 * 119.99602 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00096 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99928 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99957 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47045 * 89.99656 * 17 15 13 19 19 H 1.48499 * 109.47160 * 209.99957 * 17 15 13 20 20 H 1.48497 * 109.46987 * 329.99972 * 17 15 13 21 21 C 1.47206 * 119.20380 * 359.97438 * 4 3 2 22 22 C 1.39053 * 122.79513 * 180.02562 * 21 4 3 23 23 C 1.37895 * 119.39367 * 179.97438 * 22 21 4 24 24 C 1.38861 * 120.79463 * 0.02562 * 23 22 21 25 25 C 1.37872 * 120.74314 * 359.97438 * 24 23 22 26 26 C 1.39132 * 119.33811 * 0.02562 * 25 24 23 27 27 C 1.34880 * 118.24251 * 180.02562 * 2 1 3 28 28 O 1.21735 * 120.77122 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47343 * 269.98303 * 1 2 3 30 30 H 1.09007 * 109.47039 * 29.98359 * 1 2 3 31 31 H 1.08998 * 109.46913 * 149.97821 * 1 2 3 32 32 H 1.09002 * 109.46877 * 300.00226 * 8 7 5 33 33 H 1.08998 * 109.46797 * 60.00384 * 8 7 5 34 34 H 1.09007 * 109.46974 * 60.00292 * 10 9 8 35 35 H 1.09004 * 109.47098 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47369 * 300.00101 * 10 9 8 37 37 H 1.08999 * 109.46465 * 60.00263 * 11 9 8 38 38 H 1.09002 * 109.46476 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47137 * 300.00078 * 11 9 8 40 40 H 1.08999 * 109.47056 * 299.99458 * 12 9 8 41 41 H 1.08995 * 109.47487 * 59.99520 * 12 9 8 42 42 H 0.96995 * 119.99664 * 180.02562 * 16 15 13 43 43 H 1.08005 * 120.30506 * 0.26856 * 22 21 4 44 44 H 1.08002 * 119.60035 * 179.97438 * 23 22 21 45 45 H 1.08004 * 119.63048 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.33330 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1271 0.0000 4 6 3.3744 1.2644 0.0005 5 6 3.9836 2.6077 0.0010 6 8 5.1928 2.7266 0.0019 7 8 3.1989 3.7034 0.0005 8 6 3.8669 4.9926 0.0016 9 6 2.8207 6.1091 0.0014 10 6 1.9466 5.9887 -1.2485 11 6 1.9447 5.9873 1.2500 12 6 3.5246 7.4675 0.0020 13 6 2.4941 8.5672 0.0025 14 1 1.4424 8.3217 0.0028 15 6 2.8940 9.8867 0.0035 16 7 1.9948 10.8464 0.0044 17 14 4.7131 10.3113 0.0037 18 1 5.1950 10.4249 -1.3963 19 1 4.9196 11.6040 0.7048 20 1 5.4708 9.2425 0.7028 21 6 4.2232 0.0617 0.0016 22 6 5.6125 0.1203 0.0027 23 6 6.3394 -1.0515 0.0043 24 6 5.7005 -2.2844 0.0043 25 6 4.3241 -2.3649 0.0032 26 6 3.5727 -1.1939 0.0016 27 6 2.1033 -1.1882 -0.0005 28 8 1.4765 -2.2319 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4893 5.0785 0.8923 33 1 4.4911 5.0791 -0.8877 34 1 1.4451 5.0208 -1.2493 35 1 1.2010 6.7838 -1.2484 36 1 2.5706 6.0753 -2.1380 37 1 2.5676 6.0731 2.1404 38 1 1.1998 6.7830 1.2501 39 1 1.4433 5.0196 1.2491 40 1 4.1475 7.5535 0.8923 41 1 4.1483 7.5539 -0.8876 42 1 2.2762 11.7746 0.0048 43 1 6.1177 1.0750 0.0071 44 1 7.4186 -1.0098 0.0048 45 1 6.2883 -3.1904 0.0060 46 1 3.8341 -3.3273 0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798877939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:49 Heat of formation + Delta-G solvation = -65.350748 kcal Electronic energy + Delta-G solvation = -29801.775006 eV Core-core repulsion = 25656.998700 eV Total energy + Delta-G solvation = -4144.776306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.14784 -41.52127 -39.77406 -39.27129 -38.68357 -36.95429 -34.83580 -34.35897 -32.53692 -31.87015 -29.98290 -29.17068 -27.99004 -27.95325 -26.82711 -24.80380 -24.71709 -23.68855 -22.58931 -20.50780 -19.92762 -19.65805 -18.87118 -18.52165 -18.08434 -18.06173 -17.46783 -17.36044 -16.54853 -16.19988 -15.79739 -15.66279 -15.43334 -15.38818 -15.00223 -14.76579 -14.63982 -14.37631 -14.22161 -13.88603 -13.79831 -13.54095 -13.31830 -13.27735 -13.02455 -12.88398 -12.84137 -12.70118 -12.66555 -12.25341 -12.11878 -11.83718 -11.75071 -11.46491 -11.32815 -11.21079 -11.08643 -10.90919 -10.88575 -10.68632 -10.26780 -9.44420 -8.20032 -6.21084 -0.83056 -0.57234 0.34124 0.85955 1.25215 1.39212 1.39861 1.41725 1.51470 1.74695 2.41477 2.52878 2.69972 3.15140 3.16969 3.37359 3.58674 3.79734 3.91354 3.97299 4.12804 4.17341 4.21744 4.26297 4.33806 4.39193 4.42324 4.52989 4.61567 4.65202 4.67444 4.69954 4.88295 4.97014 5.02736 5.04034 5.14369 5.22720 5.26728 5.32378 5.41251 5.42187 5.44377 5.56923 5.66665 5.73366 5.77802 6.15524 6.38972 6.47947 6.83113 6.86167 7.41247 8.95766 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002515 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.872397 B =11132.448465 C =12444.648826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.361 5.361 3 N -0.162 5.162 4 C 0.054 3.946 5 C 0.545 3.455 6 O -0.504 6.504 7 O -0.329 6.329 8 C 0.083 3.917 9 C -0.047 4.047 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.003 4.003 13 C -0.503 4.503 14 H 0.049 0.951 15 C 0.004 3.996 16 N -0.953 5.953 17 Si 0.937 3.063 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.246 1.246 21 C -0.046 4.046 22 C -0.112 4.112 23 C -0.074 4.074 24 C -0.103 4.103 25 C -0.057 4.057 26 C -0.161 4.161 27 C 0.509 3.491 28 O -0.520 6.520 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.263 0.737 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 -29.507 -0.056 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.183 5.183 3 N 0.011 4.989 4 C -0.123 4.123 5 C 0.387 3.613 6 O -0.391 6.391 7 O -0.243 6.243 8 C 0.009 3.991 9 C -0.048 4.048 10 C -0.179 4.179 11 C -0.179 4.179 12 C -0.040 4.040 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.192 4.192 16 N -0.594 5.594 17 Si 0.762 3.238 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.169 1.169 21 C -0.049 4.049 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.076 4.076 26 C -0.167 4.167 27 C 0.304 3.696 28 O -0.396 6.396 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.179 0.821 44 H 0.187 0.813 45 H 0.192 0.808 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.826 -29.415 -0.052 29.987 hybrid contribution 0.821 0.652 -0.001 1.048 sum 6.647 -28.763 -0.053 29.521 Atomic orbital electron populations 1.22526 0.71494 1.06677 1.05963 1.46463 1.10835 1.01016 1.59978 1.70412 1.12462 1.11707 1.04360 1.21358 0.88008 0.91651 1.11242 1.19916 0.84588 0.83978 0.72806 1.90721 1.14820 1.86629 1.46962 1.86637 1.40287 1.14953 1.82467 1.23373 0.95028 0.77709 1.02957 1.20447 0.94986 0.92108 0.97220 1.21660 0.99371 1.00901 0.96004 1.21656 0.99361 1.00892 0.96011 1.19575 0.95687 0.92002 0.96740 1.21320 0.93976 0.90296 1.48524 0.93321 1.25872 1.01786 0.96612 0.94954 1.70051 1.35648 1.00165 1.53567 0.85853 0.81082 0.77957 0.78944 1.19564 1.21646 1.16940 1.19204 0.95318 0.89523 1.00895 1.22035 0.91494 1.02147 0.97533 1.21948 1.02481 0.91055 0.93680 1.21803 0.93348 0.99804 0.97249 1.21251 0.94613 0.96744 0.94953 1.19966 0.91467 0.95128 1.10172 1.19364 0.89269 0.83842 0.77113 1.90847 1.68928 1.30653 1.49158 0.88620 0.86854 0.87589 0.90536 0.90450 0.91888 0.93780 0.93321 0.93373 0.93766 0.91883 0.95995 0.96124 0.92851 0.82145 0.81329 0.80818 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.52 127.77 1.34 2.40 16 2 N -0.36 -7.94 3.62 -488.11 -1.77 -9.71 16 3 N -0.16 -3.96 10.50 -44.78 -0.47 -4.44 16 4 C 0.05 1.36 7.03 44.05 0.31 1.67 16 5 C 0.54 15.00 7.94 70.26 0.56 15.55 16 6 O -0.50 -14.41 13.48 19.82 0.27 -14.14 16 7 O -0.33 -9.67 8.71 -56.79 -0.49 -10.17 16 8 C 0.08 2.57 4.33 71.98 0.31 2.88 16 9 C -0.05 -1.74 0.61 -52.18 -0.03 -1.77 16 10 C -0.12 -4.39 8.08 71.98 0.58 -3.81 16 11 C -0.12 -4.40 8.08 71.99 0.58 -3.82 16 12 C 0.00 -0.12 3.11 29.85 0.09 -0.02 16 13 C -0.50 -27.26 8.20 25.60 0.21 -27.05 16 14 H 0.05 2.88 5.92 -2.91 -0.02 2.87 16 15 C 0.00 0.22 5.47 84.65 0.46 0.68 16 16 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 17 Si 0.94 43.33 27.47 68.60 1.88 45.22 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 21 C -0.05 -1.03 5.90 -19.94 -0.12 -1.15 16 22 C -0.11 -2.09 9.36 22.38 0.21 -1.88 16 23 C -0.07 -0.85 10.01 22.34 0.22 -0.63 16 24 C -0.10 -1.03 10.01 22.33 0.22 -0.80 16 25 C -0.06 -0.87 9.71 22.40 0.22 -0.66 16 26 C -0.16 -3.44 5.90 -20.00 -0.12 -3.56 16 27 C 0.51 12.03 7.67 86.51 0.66 12.69 16 28 O -0.52 -13.56 16.15 -4.46 -0.07 -13.63 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.38 8.13 -2.38 -0.02 1.36 16 31 H 0.11 1.42 7.32 -2.39 -0.02 1.41 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.00 7.68 -2.38 -0.02 1.98 16 35 H 0.04 1.81 6.62 -2.39 -0.02 1.79 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.82 6.62 -2.39 -0.02 1.80 16 39 H 0.06 2.01 7.68 -2.39 -0.02 1.99 16 40 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 41 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 42 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.16 3.28 5.22 -2.91 -0.02 3.27 16 44 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 46 H 0.15 1.98 7.87 -2.91 -0.02 1.96 16 Total: -1.00 -69.87 379.54 6.32 -63.55 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.95 Total: 10.97 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.72 Total: -9.27 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.94 Total: -72.53 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.30 Total: -37.94 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal Total: -69.87 6.32 -63.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.802 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds