Wall clock time and date at job start Wed Apr 1 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46924 * 2 1 4 4 N 1.30179 * 126.80184 * 275.03625 * 3 2 1 5 5 O 1.20928 * 111.60469 * 179.97438 * 4 3 2 6 6 C 1.34043 * 111.56334 * 359.75963 * 5 4 3 7 7 C 1.35446 * 106.44765 * 0.37994 * 6 5 4 8 8 C 1.50698 * 128.00359 * 179.91030 * 7 6 5 9 9 N 1.46501 * 109.47442 * 5.05916 * 8 7 6 10 10 C 1.46496 * 119.99807 * 265.09375 * 9 8 7 11 11 C 1.34771 * 119.99851 * 85.09306 * 9 8 7 12 12 O 1.21288 * 120.00300 * 359.97438 * 11 9 8 13 13 C 1.50701 * 120.00168 * 180.02562 * 11 9 8 14 14 C 1.50696 * 109.47389 * 179.97438 * 13 11 9 15 15 C 1.38298 * 119.93173 * 269.72919 * 14 13 11 16 16 C 1.38106 * 120.06672 * 179.72877 * 15 14 13 17 17 C 1.38879 * 119.93062 * 0.56237 * 16 15 14 18 18 O 1.35748 * 120.06813 * 179.68839 * 17 16 15 19 19 C 1.34821 * 116.99981 * 174.45313 * 18 17 16 20 20 H 1.08003 * 120.00279 * 5.05969 * 19 18 17 21 21 C 1.38658 * 120.00065 * 185.05536 * 19 18 17 22 22 N 1.31558 * 119.99938 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47364 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47125 * 120.00409 * 23 21 19 26 26 H 1.48501 * 109.47349 * 240.00235 * 23 21 19 27 27 C 1.38880 * 119.86069 * 359.71017 * 17 16 15 28 28 C 1.38101 * 119.93337 * 359.97438 * 27 17 16 29 29 H 1.09005 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46852 * 300.00147 * 1 2 3 31 31 H 1.09000 * 109.47411 * 60.00233 * 1 2 3 32 32 H 1.09001 * 109.47159 * 240.00266 * 2 1 3 33 33 H 1.09000 * 109.47411 * 119.99767 * 2 1 3 34 34 H 1.07995 * 126.77071 * 180.28922 * 6 5 4 35 35 H 1.09006 * 109.47078 * 245.05781 * 8 7 6 36 36 H 1.09004 * 109.47282 * 125.06292 * 8 7 6 37 37 H 1.09004 * 109.47238 * 274.80904 * 10 9 8 38 38 H 1.08995 * 109.47563 * 34.80922 * 10 9 8 39 39 H 1.09000 * 109.46709 * 154.80920 * 10 9 8 40 40 H 1.09002 * 109.46962 * 59.99923 * 13 11 9 41 41 H 1.09003 * 109.46823 * 300.00105 * 13 11 9 42 42 H 1.08002 * 119.96572 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.02993 * 180.27180 * 16 15 14 44 44 H 0.97004 * 119.99670 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.03228 * 179.97438 * 27 17 16 46 46 H 1.07996 * 119.96967 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2060 2.1866 -1.0383 5 8 2.6207 3.2777 -0.7225 6 6 2.7752 3.3808 0.6050 7 6 2.4076 2.1865 1.1277 8 6 2.3954 1.7720 2.5765 9 7 2.7419 2.9214 3.4162 10 6 4.1278 3.1231 3.8460 11 6 1.7857 3.7931 3.7933 12 8 0.6384 3.6263 3.4371 13 6 2.1422 4.9757 4.6566 14 6 0.9032 5.7877 4.9330 15 6 0.5483 6.8170 4.0803 16 6 -0.5898 7.5593 4.3278 17 6 -1.3717 7.2787 5.4407 18 8 -2.4874 8.0106 5.6901 19 6 -3.2623 7.6138 6.7195 20 1 -2.9431 6.7996 7.3533 21 6 -4.4692 8.2509 6.9647 22 7 -4.8583 9.2424 6.1924 23 14 -5.5432 7.7006 8.3905 24 1 -4.8852 6.5741 9.1000 25 1 -5.7351 8.8331 9.3316 26 1 -6.8630 7.2573 7.8739 27 6 -1.0095 6.2480 6.2982 28 6 0.1261 5.5051 6.0417 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.1252 4.2449 1.1500 35 1 3.1229 0.9754 2.7327 36 1 1.4013 1.4135 2.8435 37 1 4.3163 2.5428 4.7493 38 1 4.8044 2.7962 3.0565 39 1 4.2940 4.1805 4.0522 40 1 2.8745 5.5956 4.1393 41 1 2.5642 4.6241 5.5982 42 1 1.1596 7.0381 3.2178 43 1 -0.8687 8.3602 3.6591 44 1 -5.7028 9.6879 6.3637 45 1 -1.6153 6.0276 7.1647 46 1 0.4081 4.7032 6.7078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818557921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:55 Heat of formation + Delta-G solvation = 1.769937 kcal Electronic energy + Delta-G solvation = -29223.273054 eV Core-core repulsion = 25081.407319 eV Total energy + Delta-G solvation = -4141.865735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.92771 -41.18930 -40.47098 -38.30846 -37.17619 -36.14722 -34.41114 -33.55956 -32.55479 -32.04634 -31.76280 -29.30575 -28.08403 -27.27854 -26.31542 -25.45793 -23.62751 -23.11389 -22.15183 -21.81340 -20.05887 -19.80942 -18.82633 -18.64180 -18.50212 -17.88383 -17.08649 -16.74819 -16.34116 -16.28613 -15.84213 -15.80334 -15.50581 -15.19106 -15.04466 -14.64543 -14.50680 -14.38681 -14.20579 -13.95756 -13.81547 -13.59490 -13.56237 -13.45494 -13.03474 -12.96704 -12.77365 -12.60156 -12.50539 -12.46657 -12.25066 -12.18742 -12.09508 -11.86918 -11.16999 -10.89071 -10.87390 -10.71548 -10.32889 -9.75545 -9.73181 -8.88487 -8.47859 -6.15867 0.53761 0.62854 0.68633 1.21047 1.33265 1.42035 1.52157 1.71471 2.01983 2.17083 2.35235 2.83687 3.16279 3.19691 3.53622 3.58450 3.82282 3.96133 4.00642 4.06956 4.11079 4.20303 4.28646 4.30558 4.39793 4.42167 4.47524 4.51590 4.61138 4.66487 4.72091 4.79702 4.81262 4.89760 4.91889 5.06574 5.07692 5.08489 5.12892 5.15269 5.26780 5.31869 5.55346 5.60279 5.72885 5.79152 6.03119 6.23614 6.43678 6.96965 7.27661 7.29919 7.79055 8.76028 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.002266 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.857472 B =12351.554660 C =12900.909129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.020 3.980 4 N -0.398 5.398 5 O 0.079 5.921 6 C -0.046 4.046 7 C -0.216 4.216 8 C 0.198 3.802 9 N -0.616 5.616 10 C 0.065 3.935 11 C 0.508 3.492 12 O -0.574 6.574 13 C -0.076 4.076 14 C -0.144 4.144 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.110 3.890 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.020 2.980 24 H -0.251 1.251 25 H -0.265 1.265 26 H -0.270 1.270 27 C -0.244 4.244 28 C -0.060 4.060 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.129 0.871 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.147 0.853 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.116 0.884 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.358 -19.292 -5.062 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.140 4.140 4 N -0.105 5.105 5 O 0.017 5.983 6 C -0.127 4.127 7 C -0.222 4.222 8 C 0.074 3.926 9 N -0.349 5.349 10 C -0.076 4.076 11 C 0.298 3.702 12 O -0.452 6.452 13 C -0.115 4.115 14 C -0.145 4.145 15 C -0.075 4.075 16 C -0.227 4.227 17 C 0.060 3.940 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.195 1.195 27 C -0.264 4.264 28 C -0.078 4.078 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.248 0.752 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 23.363 -19.184 -6.686 30.960 hybrid contribution -1.209 0.385 1.081 1.667 sum 22.154 -18.799 -5.605 29.591 Atomic orbital electron populations 1.21709 0.94380 1.03215 1.01122 1.20087 0.95969 0.86884 1.05236 1.23940 1.01489 1.00270 0.88253 1.73816 1.17695 0.93416 1.25603 1.84766 1.61815 1.27197 1.24483 1.26053 1.02621 1.01197 0.82824 1.21925 1.06911 0.94728 0.98592 1.19585 1.03036 0.88510 0.81474 1.47939 1.10211 1.25816 1.50980 1.22232 0.79056 1.04608 1.01698 1.21283 0.84570 0.84190 0.80171 1.90783 1.22253 1.75310 1.56823 1.20601 0.95773 0.93362 1.01791 1.19288 0.99476 0.98944 0.96781 1.20877 0.94337 0.93938 0.98373 1.20449 0.98795 1.05371 0.98120 1.19950 0.87974 0.91413 0.94616 1.83935 1.31376 1.49571 1.49321 1.21857 1.01148 1.19277 1.06589 0.88252 1.26621 0.97670 0.95832 1.02101 1.70199 1.22779 1.23108 1.40031 0.84520 0.77111 0.78795 0.75696 1.17454 1.19005 1.19477 1.21226 1.01719 1.00771 1.02641 1.20937 0.92585 0.97123 0.97143 0.89359 0.93599 0.94263 0.89380 0.87038 0.75209 0.85350 0.90643 0.90552 0.89542 0.88507 0.84786 0.85282 0.83496 0.87278 0.91859 0.86656 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.89 71.98 0.71 -1.73 16 2 C -0.04 -0.64 6.45 29.85 0.19 -0.45 16 3 C 0.02 0.42 6.58 43.58 0.29 0.70 16 4 N -0.40 -10.05 12.07 -49.54 -0.60 -10.65 16 5 O 0.08 1.86 11.20 71.60 0.80 2.66 16 6 C -0.05 -0.83 11.62 67.17 0.78 -0.05 16 7 C -0.22 -3.90 6.22 -19.74 -0.12 -4.02 16 8 C 0.20 2.71 5.85 85.63 0.50 3.21 16 9 N -0.62 -7.71 2.32 -851.13 -1.97 -9.69 16 10 C 0.07 0.19 10.30 127.77 1.32 1.51 16 11 C 0.51 10.76 7.58 87.66 0.66 11.42 16 12 O -0.57 -19.50 15.70 -3.05 -0.05 -19.55 16 13 C -0.08 -1.30 4.31 29.10 0.13 -1.17 16 14 C -0.14 -4.35 4.38 -19.84 -0.09 -4.44 16 15 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 16 C -0.21 -9.35 9.99 22.39 0.22 -9.13 16 17 C 0.11 5.80 6.65 22.58 0.15 5.95 16 18 O -0.24 -14.80 9.76 -22.63 -0.22 -15.02 16 19 C -0.41 -25.00 9.49 67.92 0.64 -24.35 16 20 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 21 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 22 N -0.92 -58.42 13.67 21.61 0.30 -58.12 16 23 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 24 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 C -0.24 -11.17 9.17 22.39 0.21 -10.96 16 28 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 29 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.23 2.70 7.95 -2.91 -0.02 2.67 16 35 H 0.13 0.82 8.04 -2.38 -0.02 0.80 16 36 H 0.08 1.42 7.57 -2.38 -0.02 1.40 16 37 H 0.08 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.09 0.04 8.11 -2.39 -0.02 0.02 16 39 H 0.10 0.00 6.27 -2.39 -0.01 -0.02 16 40 H 0.13 1.29 7.36 -2.39 -0.02 1.27 16 41 H 0.13 1.42 8.05 -2.39 -0.02 1.40 16 42 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 46 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -89.41 394.41 7.77 -81.64 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.00 Total: 20.60 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 6.49 Total: -38.16 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.28 Total: -78.46 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: 0.53 Total: -31.91 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -89.41 7.77 -81.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818557921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.408 kcal (2) G-P(sol) polarization free energy of solvation -89.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds