Wall clock time and date at job start Wed Apr 1 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47312 * 21.81028 * 3 2 1 5 5 C 1.35954 * 116.99978 * 180.02562 * 4 3 2 6 6 C 1.38753 * 119.97975 * 359.71957 * 5 4 3 7 7 C 1.38058 * 120.01979 * 179.76739 * 6 5 4 8 8 C 1.38918 * 119.97894 * 0.53558 * 7 6 5 9 9 N 1.39866 * 120.02309 * 179.70302 * 8 7 6 10 10 C 1.34773 * 120.00140 * 33.36365 * 9 8 7 11 11 O 1.21388 * 119.99692 * 5.28064 * 10 9 8 12 12 C 1.49329 * 120.00485 * 185.28247 * 10 9 8 13 13 O 1.21368 * 119.99856 * 359.97438 * 12 10 9 14 14 N 1.34772 * 120.00466 * 180.02562 * 12 10 9 15 15 C 1.46497 * 120.00486 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47633 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.46992 * 299.99879 * 16 15 14 18 18 C 1.53002 * 109.47018 * 59.99447 * 16 15 14 19 19 C 1.50699 * 109.47298 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00418 * 359.97438 * 19 16 15 21 21 C 1.37880 * 119.99995 * 180.02562 * 19 16 15 22 22 N 1.31514 * 119.99865 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00282 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46929 * 59.99374 * 23 21 19 25 25 H 1.48496 * 109.47491 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46886 * 299.99935 * 23 21 19 27 27 C 1.38917 * 119.96009 * 359.72261 * 8 7 6 28 28 C 1.38059 * 119.97957 * 359.97438 * 27 8 7 29 29 H 4.38451 * 5.44509 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47032 * 261.80938 * 3 2 1 31 31 H 1.08996 * 109.46956 * 141.80873 * 3 2 1 32 32 H 1.07996 * 119.98694 * 0.02562 * 6 5 4 33 33 H 1.07996 * 120.01281 * 180.23907 * 7 6 5 34 34 H 0.97005 * 120.00289 * 213.37078 * 9 8 7 35 35 H 0.97002 * 119.99958 * 359.97438 * 14 12 10 36 36 H 1.09000 * 109.46982 * 299.99657 * 15 14 12 37 37 H 1.09002 * 109.47536 * 59.98963 * 15 14 12 38 38 H 1.09001 * 109.47419 * 60.00142 * 17 16 15 39 39 H 1.09003 * 109.47199 * 179.97438 * 17 16 15 40 40 H 1.09004 * 109.47284 * 299.99520 * 17 16 15 41 41 H 1.09008 * 109.47048 * 60.00409 * 18 16 15 42 42 H 1.08997 * 109.46975 * 179.97438 * 18 16 15 43 43 H 1.08996 * 109.47258 * 300.00344 * 18 16 15 44 44 H 0.96999 * 120.00007 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.01342 * 179.97438 * 27 8 7 46 46 H 1.08002 * 119.99071 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2500 -0.5006 5 6 4.4708 -1.4149 -0.5662 6 6 5.3152 -0.3906 -0.1622 7 6 6.6841 -0.5590 -0.2241 8 6 7.2161 -1.7502 -0.7013 9 7 8.6027 -1.9194 -0.7702 10 6 9.3987 -1.3422 0.1516 11 8 8.9087 -0.7562 1.0951 12 6 10.8832 -1.4235 0.0125 13 8 11.3731 -2.0098 -0.9305 14 7 11.6791 -0.8468 0.9346 15 6 13.1356 -0.9261 0.7978 16 6 13.7983 -0.1952 1.9672 17 6 13.3648 1.2720 1.9631 18 6 13.3733 -0.8488 3.2837 19 6 15.2965 -0.2774 1.8267 20 1 15.7324 -0.7990 0.9876 21 6 16.1107 0.3126 2.7702 22 7 15.5799 0.9474 3.7923 23 14 17.9678 0.2115 2.5958 24 1 18.3802 0.8464 1.3183 25 1 18.6110 0.9207 3.7308 26 1 18.3884 -1.2128 2.5990 27 6 6.3700 -2.7731 -1.1106 28 6 5.0013 -2.6053 -1.0422 29 1 -1.0499 -0.0003 -0.0003 30 1 3.0092 0.1472 1.0172 31 1 3.0089 0.8085 -0.6354 32 1 4.9014 0.5370 0.2045 33 1 7.3411 0.2369 0.0940 34 1 8.9917 -2.4522 -1.4815 35 1 11.2876 -0.3785 1.6885 36 1 13.4444 -1.9714 0.8003 37 1 13.4384 -0.4601 -0.1400 38 1 12.2812 1.3311 2.0649 39 1 13.8366 1.7926 2.7965 40 1 13.6676 1.7377 1.0252 41 1 13.6821 -1.8942 3.2867 42 1 13.8458 -0.3285 4.1168 43 1 12.2897 -0.7898 3.3855 44 1 16.1527 1.3628 4.4559 45 1 6.7826 -3.6994 -1.4822 46 1 4.3433 -3.4003 -1.3607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839581304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:06 Heat of formation + Delta-G solvation = -19.041824 kcal Electronic energy + Delta-G solvation = -28398.903401 eV Core-core repulsion = 24256.135200 eV Total energy + Delta-G solvation = -4142.768200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12073 -40.22432 -38.85865 -37.59075 -36.55388 -34.87590 -33.76344 -33.31488 -31.41001 -30.93977 -29.54589 -27.83511 -26.33467 -25.76058 -25.32625 -24.04198 -23.24170 -21.92068 -20.25921 -19.24117 -18.92593 -18.66270 -18.41328 -17.44587 -16.58795 -16.44494 -16.18203 -15.75553 -15.64647 -14.97854 -14.92486 -14.67746 -14.43822 -14.18758 -13.79051 -13.54388 -13.40653 -13.37992 -12.96943 -12.82192 -12.67134 -12.26540 -12.17703 -11.69247 -11.43897 -11.39741 -11.20894 -10.99944 -10.89169 -10.76572 -10.73347 -10.43525 -10.23676 -10.18709 -9.69248 -9.64000 -9.36641 -9.26591 -8.84913 -8.68732 -8.40108 -8.03375 -6.05258 -4.16293 0.86655 1.03940 1.62972 1.82707 2.26467 2.40369 3.18109 3.25176 3.28016 3.32896 3.35780 3.53411 3.76477 3.90372 4.36339 4.46977 4.52447 4.66129 4.69607 4.77110 4.93900 5.08132 5.20589 5.21414 5.35073 5.53083 5.69511 5.98546 6.03807 6.05661 6.09832 6.18230 6.41843 6.45346 6.55034 6.76658 6.80752 6.88348 6.95849 6.96231 6.98810 7.03225 7.29046 7.51274 7.55176 7.65941 7.83197 7.96547 8.07620 8.23222 8.35432 8.83565 9.49749 10.96109 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.001721 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.531349 B =16263.176547 C =17030.007120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.200 4.200 3 C 0.172 3.828 4 O -0.311 6.311 5 C 0.113 3.887 6 C -0.187 4.187 7 C -0.078 4.078 8 C 0.112 3.888 9 N -0.647 5.647 10 C 0.508 3.492 11 O -0.501 6.501 12 C 0.498 3.502 13 O -0.532 6.532 14 N -0.677 5.677 15 C 0.128 3.872 16 C 0.055 3.945 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.509 4.509 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.101 4.101 28 C -0.128 4.128 29 H 0.225 0.775 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.423 0.577 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.008 0.992 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.087 0.913 43 H 0.008 0.992 44 H 0.261 0.739 45 H 0.137 0.863 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.929 -2.905 -8.080 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.200 4.200 3 C 0.097 3.903 4 O -0.226 6.226 5 C 0.068 3.932 6 C -0.206 4.206 7 C -0.098 4.098 8 C 0.019 3.981 9 N -0.295 5.295 10 C 0.290 3.710 11 O -0.375 6.375 12 C 0.277 3.723 13 O -0.410 6.410 14 N -0.329 5.329 15 C 0.006 3.994 16 C 0.055 3.945 17 C -0.191 4.191 18 C -0.191 4.191 19 C -0.547 4.547 20 H 0.076 0.924 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.121 4.121 28 C -0.148 4.148 29 H 0.241 0.759 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.261 0.739 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.155 0.845 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.901 -2.888 -7.923 26.290 hybrid contribution 0.907 0.122 0.057 0.917 sum -23.993 -2.766 -7.866 25.401 Atomic orbital electron populations 1.25031 0.95886 0.96957 0.99787 1.22283 0.93557 1.02742 1.01405 1.19282 0.84910 0.85769 1.00301 1.86093 1.19449 1.36336 1.80674 1.18925 0.81590 0.94915 0.97775 1.21132 0.93614 0.99531 1.06339 1.20997 0.94713 0.96227 0.97872 1.17665 0.82348 0.94601 1.03532 1.43155 1.04290 1.51829 1.30195 1.20670 0.88808 0.79378 0.82122 1.90773 1.76196 1.40430 1.30078 1.19727 0.86636 0.81651 0.84303 1.90749 1.75788 1.42848 1.31615 1.46232 1.08776 1.52294 1.25570 1.21983 0.74822 1.01266 1.01332 1.18393 0.94900 0.91721 0.89536 1.21855 0.95932 0.99136 1.02160 1.21858 0.95962 0.99344 1.01947 1.20897 0.89486 1.35080 1.09255 0.92383 1.24878 0.98675 0.94832 0.95042 1.69793 1.34837 1.35396 1.12199 0.86612 0.85273 0.78252 0.77589 1.20268 1.21311 1.20259 1.20739 0.92081 0.97675 1.01586 1.20173 0.94309 0.96367 1.03910 0.75861 0.89310 0.89377 0.84883 0.84150 0.73909 0.75108 0.91845 0.91855 0.97319 0.89417 0.95317 0.95317 0.89410 0.97303 0.92853 0.84529 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 19.25 29.55 0.57 -0.45 16 2 C -0.20 -1.60 13.73 -37.12 -0.51 -2.11 16 3 C 0.17 1.25 5.21 34.37 0.18 1.43 16 4 O -0.31 -3.01 10.10 -19.60 -0.20 -3.21 16 5 C 0.11 1.10 6.69 -39.20 -0.26 0.84 16 6 C -0.19 -1.79 9.03 -39.46 -0.36 -2.14 16 7 C -0.08 -0.89 8.65 -39.40 -0.34 -1.23 16 8 C 0.11 1.25 6.28 -83.69 -0.53 0.72 16 9 N -0.65 -7.57 5.33 -10.27 -0.05 -7.62 16 10 C 0.51 7.40 7.62 -11.64 -0.09 7.31 16 11 O -0.50 -8.09 14.16 5.46 0.08 -8.02 16 12 C 0.50 8.29 7.89 -11.64 -0.09 8.20 16 13 O -0.53 -9.69 16.48 5.48 0.09 -9.60 16 14 N -0.68 -12.04 4.95 -60.77 -0.30 -12.34 16 15 C 0.13 2.59 4.50 -4.04 -0.02 2.57 16 16 C 0.06 1.25 0.50 -155.66 -0.08 1.18 16 17 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 18 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 19 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 22 N -0.88 -23.24 9.35 55.43 0.52 -22.72 16 23 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.10 -0.91 9.96 -39.40 -0.39 -1.30 16 28 C -0.13 -1.16 9.98 -39.46 -0.39 -1.55 16 29 H 0.22 0.56 7.80 -54.10 -0.42 0.14 16 30 H 0.09 0.53 7.67 -51.93 -0.40 0.13 16 31 H 0.09 0.49 7.65 -51.93 -0.40 0.09 16 32 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 33 H 0.14 1.74 6.41 -52.49 -0.34 1.40 16 34 H 0.42 4.19 8.30 -40.82 -0.34 3.86 16 35 H 0.41 7.17 5.63 -40.82 -0.23 6.94 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 39 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 43 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 44 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 45 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -29.60 390.18 -6.96 -36.55 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.87 Total: 9.23 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.08 Total: -3.48 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.16 Total: -42.68 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.03 Total: -20.83 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.60 -6.96 -36.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839581304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.512 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds