Wall clock time and date at job start Wed Apr 1 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46837 * 2 1 4 4 C 1.52995 * 109.47033 * 119.99755 * 2 1 3 5 5 O 1.45208 * 109.47100 * 300.00110 * 4 2 1 6 6 C 1.34229 * 116.99784 * 180.02562 * 5 4 2 7 7 O 1.20830 * 119.99962 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99937 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47208 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97915 * 9 8 6 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99715 * 9 8 6 24 24 N 1.46499 * 109.47264 * 240.00010 * 2 1 3 25 25 C 1.34945 * 126.03918 * 44.71437 * 24 2 1 26 26 C 1.35317 * 107.74640 * 179.84100 * 25 24 2 27 27 C 1.39860 * 107.91842 * 0.42378 * 26 25 24 28 28 N 1.30836 * 108.20478 * 359.73673 * 27 26 25 29 29 H 1.08999 * 109.47291 * 300.00453 * 1 2 3 30 30 H 1.09005 * 109.46684 * 60.00080 * 1 2 3 31 31 H 1.08998 * 109.46923 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46830 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47204 * 299.99635 * 3 2 1 34 34 H 1.08999 * 109.47550 * 59.99706 * 3 2 1 35 35 H 1.09002 * 109.47268 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47265 * 60.00210 * 4 2 1 37 37 H 1.09002 * 109.46571 * 59.99926 * 8 6 5 38 38 H 1.08992 * 109.46782 * 300.00190 * 8 6 5 39 39 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 40 40 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 41 41 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 42 42 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 44 44 H 1.08005 * 126.12326 * 0.02562 * 25 24 2 45 45 H 1.07996 * 126.03734 * 180.15864 * 26 25 24 46 46 H 1.08005 * 125.89808 * 179.76173 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.5560 -0.0366 2.4348 6 6 1.9171 -0.5463 3.6229 7 8 2.6149 -1.5316 3.6706 8 6 1.4531 0.1109 4.8972 9 6 1.9928 -0.6504 6.0805 10 6 1.2618 -1.6914 6.6240 11 6 1.7534 -2.3920 7.7101 12 6 2.9795 -2.0583 8.2514 13 6 3.7131 -1.0102 7.7117 14 8 4.9158 -0.6760 8.2453 15 6 5.2862 -1.3195 9.3707 16 1 4.6748 -2.1194 9.7614 17 6 6.4521 -0.9542 10.0263 18 7 7.1965 0.0205 9.5506 19 14 6.9649 -1.8453 11.5860 20 1 7.8210 -3.0065 11.2338 21 1 7.7257 -0.9163 12.4596 22 1 5.7556 -2.3217 12.3043 23 6 3.2163 -0.3079 6.6211 24 7 2.0184 -0.6906 -1.1962 25 6 1.5520 -0.5292 -2.4521 26 6 2.2672 -1.3407 -3.2651 27 6 3.1962 -2.0285 -2.4776 28 7 3.0480 -1.6396 -1.2372 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9565 0.8899 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.3636 0.1102 4.9305 38 1 1.8169 1.1378 4.9296 39 1 0.3051 -1.9575 6.1993 40 1 1.1802 -3.2039 8.1325 41 1 3.3653 -2.6092 9.0965 42 1 8.0119 0.2762 10.0095 43 1 3.7862 0.5054 6.1967 44 1 0.7532 0.1317 -2.7546 45 1 2.1400 -1.4427 -4.3327 46 1 3.9125 -2.7549 -2.8323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851308090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:10 Heat of formation + Delta-G solvation = -28.030505 kcal Electronic energy + Delta-G solvation = -28795.989621 eV Core-core repulsion = 24652.831642 eV Total energy + Delta-G solvation = -4143.157979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31593 -41.67320 -40.70984 -38.75822 -38.02925 -36.58668 -34.37626 -33.64027 -31.50299 -30.96538 -30.70762 -29.24665 -28.43345 -27.75633 -27.20333 -23.95593 -23.34123 -23.01917 -21.89374 -21.65196 -20.43781 -19.54026 -18.93866 -18.79740 -17.83872 -17.76552 -17.23444 -16.76568 -16.46800 -16.12784 -16.09992 -15.64054 -15.45780 -15.26904 -15.08907 -14.82612 -14.48383 -14.37617 -14.10597 -13.91671 -13.70503 -13.59373 -13.54137 -13.15220 -13.05131 -12.99460 -12.89748 -12.51967 -12.47058 -12.45649 -12.26581 -12.22448 -12.12168 -11.85347 -11.65399 -11.49830 -11.23527 -10.82594 -10.41990 -9.72728 -9.54715 -9.02488 -8.48733 -6.17428 0.37849 0.71049 0.98169 1.14307 1.19808 1.33037 1.42845 1.51039 1.81268 1.96106 2.16236 2.80219 3.09289 3.23076 3.37680 3.48961 3.65258 3.68678 3.89812 4.00866 4.06640 4.11547 4.22758 4.28191 4.30599 4.37230 4.48375 4.52561 4.59407 4.62214 4.70603 4.74724 4.76638 4.79208 4.90298 5.00057 5.08735 5.10396 5.16310 5.17784 5.23004 5.30852 5.59778 5.67482 5.70555 5.74206 6.00415 6.13935 6.18980 6.66949 6.76579 6.95658 7.76500 8.74677 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.001956 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.601328 B =14310.032924 C =14965.347869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.189 3.811 3 C -0.154 4.154 4 C 0.083 3.917 5 O -0.338 6.338 6 C 0.466 3.534 7 O -0.536 6.536 8 C -0.057 4.057 9 C -0.039 4.039 10 C -0.176 4.176 11 C -0.074 4.074 12 C -0.242 4.242 13 C 0.110 3.890 14 O -0.234 6.234 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.251 1.251 23 C -0.190 4.190 24 N -0.374 5.374 25 C 0.064 3.936 26 C -0.282 4.282 27 C 0.034 3.966 28 N -0.354 5.354 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.109 0.891 44 H 0.211 0.789 45 H 0.172 0.828 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 2.373 -23.081 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.107 3.893 3 C -0.212 4.212 4 C 0.008 3.992 5 O -0.254 6.254 6 C 0.310 3.690 7 O -0.424 6.424 8 C -0.094 4.094 9 C -0.039 4.039 10 C -0.194 4.194 11 C -0.092 4.092 12 C -0.261 4.261 13 C 0.060 3.940 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.175 1.175 23 C -0.209 4.209 24 N -0.158 5.158 25 C -0.081 4.081 26 C -0.311 4.311 27 C -0.151 4.151 28 N -0.175 5.175 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.179 0.821 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.227 0.773 45 H 0.189 0.811 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.928 2.292 -21.792 28.955 hybrid contribution 1.140 -0.687 -0.095 1.334 sum -17.788 1.605 -21.887 28.249 Atomic orbital electron populations 1.22259 0.89010 1.03697 1.06076 1.20634 0.96762 0.91986 0.79955 1.22258 1.01049 0.92482 1.05445 1.22726 0.98923 0.95395 0.82199 1.86369 1.69631 1.55288 1.14128 1.24236 0.76831 0.82212 0.85734 1.90761 1.36276 1.27484 1.87921 1.20414 1.05609 1.00275 0.83072 1.19146 0.92848 0.96525 0.95401 1.21029 1.02044 0.97602 0.98734 1.21157 0.93749 0.98825 0.95453 1.21340 0.98528 1.01220 1.05018 1.19883 0.86071 0.94131 0.93949 1.83938 1.30116 1.60123 1.39879 1.21827 1.08967 1.17209 1.01018 0.88142 1.26628 0.95059 0.97548 1.02990 1.70187 1.14837 1.29388 1.41558 0.84570 0.79085 0.77444 0.74984 1.19020 1.19381 1.17474 1.20260 0.98172 1.03578 0.98884 1.48959 1.27297 1.32432 1.07126 1.23100 1.00644 1.01041 0.83343 1.21884 1.02341 1.04784 1.02141 1.24390 1.00212 1.00314 0.90231 1.77394 1.08585 1.08599 1.22919 0.87927 0.88478 0.92368 0.93845 0.89107 0.88270 0.92713 0.92059 0.82069 0.84535 0.83011 0.83479 0.86350 0.91838 0.87273 0.77278 0.81081 0.78563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.14 71.98 0.59 -0.90 16 2 C 0.19 3.11 1.07 3.61 0.00 3.12 16 3 C -0.15 -2.09 8.59 71.98 0.62 -1.47 16 4 C 0.08 2.00 3.94 71.98 0.28 2.28 16 5 O -0.34 -7.45 8.88 -51.40 -0.46 -7.91 16 6 C 0.47 12.97 7.95 71.24 0.57 13.54 16 7 O -0.54 -20.74 15.78 21.95 0.35 -20.40 16 8 C -0.06 -1.28 5.94 29.10 0.17 -1.11 16 9 C -0.04 -1.31 4.37 -19.88 -0.09 -1.40 16 10 C -0.18 -5.53 9.70 22.30 0.22 -5.32 16 11 C -0.07 -2.62 10.04 22.25 0.22 -2.40 16 12 C -0.24 -11.01 9.17 22.39 0.21 -10.81 16 13 C 0.11 5.73 6.65 22.58 0.15 5.88 16 14 O -0.23 -14.64 9.76 -22.74 -0.22 -14.86 16 15 C -0.41 -24.94 9.49 67.92 0.64 -24.30 16 16 H 0.10 5.56 5.21 -2.91 -0.02 5.54 16 17 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 18 N -0.92 -58.04 13.67 21.61 0.30 -57.75 16 19 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 23 C -0.19 -8.42 9.65 22.39 0.22 -8.20 16 24 N -0.37 -7.12 3.43 -307.83 -1.06 -8.18 16 25 C 0.06 0.83 10.60 83.54 0.89 1.72 16 26 C -0.28 -3.98 10.80 21.99 0.24 -3.75 16 27 C 0.03 0.65 12.02 85.23 1.02 1.68 16 28 N -0.35 -8.98 11.66 -57.03 -0.66 -9.65 16 29 H 0.10 0.82 7.68 -2.39 -0.02 0.80 16 30 H 0.10 0.41 7.36 -2.38 -0.02 0.39 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 1.15 7.68 -2.39 -0.02 1.13 16 35 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 36 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 37 H 0.16 2.09 8.09 -2.39 -0.02 2.07 16 38 H 0.14 2.51 8.08 -2.39 -0.02 2.49 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 43 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.21 0.83 7.54 -2.91 -0.02 0.81 16 45 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -87.23 394.14 7.67 -79.55 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.99 Total: 25.55 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 6.41 Total: -32.44 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.43 Total: -75.58 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.33 Total: -43.17 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -87.23 7.67 -79.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851308090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.523 kcal (2) G-P(sol) polarization free energy of solvation -87.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds