Wall clock time and date at job start Wed Apr 1 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99949 * 2 1 4 4 O 1.20822 * 120.00095 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00252 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47173 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.46983 * 179.97438 * 6 5 3 8 8 C 1.36885 * 119.99750 * 264.15617 * 7 6 5 9 9 H 1.08000 * 119.99951 * 136.22483 * 8 7 6 10 10 C 1.39027 * 120.00158 * 316.22090 * 8 7 6 11 11 N 1.31377 * 119.99784 * 346.96717 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 166.97098 * 10 8 7 13 13 H 1.48498 * 109.47615 * 59.99794 * 12 10 8 14 14 H 1.48500 * 109.47360 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47016 * 299.99798 * 12 10 8 16 16 C 1.34777 * 119.99674 * 84.15547 * 7 6 5 17 17 O 1.21630 * 120.00196 * 5.64370 * 16 7 6 18 18 C 1.47390 * 119.99780 * 185.63928 * 16 7 6 19 19 C 1.39423 * 120.21454 * 312.85545 * 18 16 7 20 20 C 1.38299 * 120.48680 * 180.22914 * 19 18 16 21 21 C 1.37932 * 120.59862 * 359.46059 * 20 19 18 22 22 C 1.39561 * 119.99905 * 0.55955 * 21 20 19 23 23 C 1.46566 * 133.95136 * 179.75634 * 22 21 20 24 24 C 1.50702 * 126.55178 * 359.96885 * 23 22 21 25 25 C 1.34216 * 106.89117 * 179.97438 * 23 22 21 26 26 C 1.50711 * 125.05970 * 179.97438 * 25 23 22 27 27 N 1.36888 * 109.88197 * 0.02562 * 25 23 22 28 28 H 0.96992 * 125.01490 * 180.02562 * 27 25 23 29 29 C 1.37125 * 109.96714 * 359.97438 * 27 25 23 30 30 H 1.08996 * 109.47045 * 60.00413 * 1 2 3 31 31 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47200 * 300.00254 * 1 2 3 33 33 H 1.08997 * 109.46618 * 59.99306 * 5 3 2 34 34 H 1.08992 * 109.46774 * 299.99773 * 5 3 2 35 35 H 1.08995 * 109.47681 * 59.99685 * 6 5 3 36 36 H 1.09004 * 109.47095 * 299.99363 * 6 5 3 37 37 H 0.97006 * 119.99845 * 180.02562 * 11 10 8 38 38 H 1.08000 * 119.75613 * 359.95700 * 19 18 16 39 39 H 1.08004 * 119.69701 * 179.74298 * 20 19 18 40 40 H 1.07998 * 119.99705 * 180.23855 * 21 20 19 41 41 H 1.08998 * 109.47014 * 269.94967 * 24 23 22 42 42 H 1.08999 * 109.47162 * 29.95087 * 24 23 22 43 43 H 1.09002 * 109.46824 * 149.95347 * 24 23 22 44 44 H 1.09001 * 109.46828 * 270.00203 * 26 25 23 45 45 H 1.09002 * 109.46610 * 29.99984 * 26 25 23 46 46 H 1.08993 * 109.47097 * 149.99731 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1392 2.9760 1.1808 9 1 7.0258 2.3913 1.3772 10 6 5.6848 3.8885 2.1261 11 7 4.7731 4.7756 1.7976 12 14 6.3705 3.8533 3.8633 13 1 7.8374 4.0809 3.8213 14 1 5.7275 4.9206 4.6711 15 1 6.0923 2.5307 4.4786 16 6 6.1432 2.7344 -1.1595 17 8 5.5414 2.6981 -2.2159 18 6 7.6163 2.6864 -1.1486 19 6 8.3420 3.5888 -0.3721 20 6 9.7244 3.5519 -0.3612 21 6 10.4076 2.6155 -1.1090 22 6 9.7040 1.7017 -1.8948 23 6 10.1019 0.6103 -2.7885 24 6 11.5102 0.1744 -3.1011 25 6 8.9722 0.0735 -3.2754 26 6 8.9088 -1.0827 -4.2401 27 7 7.8862 0.7331 -2.7661 28 1 6.9616 0.5247 -2.9721 29 6 8.2984 1.7311 -1.9210 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.9564 0.7805 -0.8891 34 1 3.9557 0.7810 0.8908 35 1 3.6100 3.2368 0.8892 36 1 3.6108 3.2356 -0.8907 37 1 4.4563 5.4125 2.4572 38 1 7.8208 4.3250 0.2219 39 1 10.2739 4.2597 0.2417 40 1 11.4872 2.5930 -1.0903 41 1 11.8774 0.7256 -3.9667 42 1 12.1517 0.3758 -2.2432 43 1 11.5199 -0.8934 -3.3194 44 1 8.9215 -0.7041 -5.2622 45 1 9.7685 -1.7342 -4.0832 46 1 7.9908 -1.6458 -4.0725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:30 Heat of formation + Delta-G solvation = -69.512205 kcal Electronic energy + Delta-G solvation = -30387.838877 eV Core-core repulsion = 26242.882116 eV Total energy + Delta-G solvation = -4144.956760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99288 -40.10747 -38.64114 -36.39543 -36.14900 -34.99344 -32.85353 -32.08560 -31.17191 -30.50316 -29.42759 -27.52211 -27.47777 -25.56317 -25.05153 -24.03571 -21.88792 -21.13714 -20.31231 -19.41355 -18.72371 -17.68960 -17.15828 -16.70337 -16.28427 -16.20625 -15.86241 -15.30448 -14.73259 -14.70712 -14.44138 -14.31158 -13.81676 -13.67566 -13.53520 -13.05651 -12.84294 -12.80703 -12.63807 -12.59900 -12.40679 -12.27300 -12.08498 -11.98205 -11.74146 -11.62053 -11.27505 -11.14012 -11.08240 -10.92628 -10.74212 -10.60451 -10.59604 -10.42911 -10.16295 -10.06800 -9.19751 -8.96213 -8.59343 -7.69373 -7.55108 -7.08726 -6.43136 -4.22347 1.46349 2.21348 2.60555 2.89825 2.98726 3.11513 3.18762 3.19963 3.53285 3.81575 4.05975 4.47182 4.68335 4.87088 4.92627 5.17938 5.19790 5.23858 5.26311 5.34442 5.39080 5.47066 5.49297 5.58614 5.71761 5.73934 5.76953 5.82290 5.86445 5.87608 6.03659 6.09550 6.15782 6.18624 6.35919 6.49000 6.65703 6.67635 6.81125 7.03531 7.17123 7.19452 7.24790 7.32334 7.40339 7.67720 7.82216 7.97424 8.12149 8.28481 8.96463 9.33432 9.77486 10.59260 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008942 B = 0.004257 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.576777 B = 6576.500774 C = 8988.993395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.125 4.125 6 C 0.132 3.868 7 N -0.427 5.427 8 C -0.346 4.346 9 H 0.093 0.907 10 C 0.047 3.953 11 N -0.857 5.857 12 Si 0.914 3.086 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.516 3.484 17 O -0.603 6.603 18 C -0.105 4.105 19 C -0.039 4.039 20 C -0.159 4.159 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.180 4.180 24 C -0.070 4.070 25 C 0.067 3.933 26 C -0.089 4.089 27 N -0.582 5.582 28 H 0.416 0.584 29 C 0.139 3.861 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.273 0.727 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -10.217 -4.314 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.164 4.164 6 C 0.008 3.992 7 N -0.144 5.144 8 C -0.474 4.474 9 H 0.110 0.890 10 C -0.160 4.160 11 N -0.492 5.492 12 Si 0.739 3.261 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.305 3.695 17 O -0.489 6.489 18 C -0.110 4.110 19 C -0.058 4.058 20 C -0.178 4.178 21 C -0.089 4.089 22 C -0.122 4.122 23 C -0.187 4.187 24 C -0.127 4.127 25 C -0.041 4.041 26 C -0.147 4.147 27 N -0.185 5.185 28 H 0.254 0.746 29 C 0.029 3.971 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.556 -9.804 -4.755 11.811 hybrid contribution -0.531 0.062 1.003 1.137 sum 4.025 -9.742 -3.752 11.189 Atomic orbital electron populations 1.23172 0.77290 1.03052 1.02381 1.86535 1.22810 1.34396 1.84667 1.24026 0.92322 0.80925 0.71828 1.90659 1.67226 1.36195 1.44915 1.21920 0.86035 1.03434 1.05042 1.21122 0.82283 0.90509 1.05246 1.43209 1.04229 1.61695 1.05229 1.19392 1.12341 1.22024 0.93676 0.88983 1.25491 0.96527 0.93765 1.00220 1.69863 1.28614 1.15650 1.35077 0.86203 0.79576 0.78187 0.82091 1.19265 1.20841 1.19732 1.18398 0.86687 0.80262 0.84103 1.90633 1.70391 1.56693 1.31229 1.18910 0.93639 0.98005 1.00475 1.21375 0.93063 0.97161 0.94241 1.20830 0.94312 1.00523 1.02171 1.20452 0.98640 0.94166 0.95681 1.18898 0.91601 0.99425 1.02264 1.19905 0.94235 1.00258 1.04312 1.20026 0.91728 0.99959 1.00988 1.20008 0.86285 0.97645 1.00186 1.20409 1.03160 0.94155 0.96939 1.41575 1.08390 1.28733 1.39767 0.74622 1.17995 0.92960 0.91646 0.94457 0.92158 0.88603 0.92115 0.88741 0.87741 0.86943 0.91587 0.91660 0.83572 0.86220 0.86766 0.92378 0.92161 0.92396 0.90822 0.90076 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.89 10.57 -39.24 -0.41 -6.31 16 3 C 0.47 8.84 7.96 36.01 0.29 9.13 16 4 O -0.50 -10.86 15.73 -18.75 -0.29 -11.16 16 5 C -0.13 -2.45 6.09 -27.89 -0.17 -2.62 16 6 C 0.13 3.12 4.18 -4.04 -0.02 3.11 16 7 N -0.43 -10.35 2.49 -116.05 -0.29 -10.64 16 8 C -0.35 -8.32 6.52 -15.00 -0.10 -8.42 16 9 H 0.09 2.18 6.90 -52.49 -0.36 1.82 16 10 C 0.05 1.14 5.05 -17.45 -0.09 1.05 16 11 N -0.86 -22.11 11.50 55.50 0.64 -21.47 16 12 Si 0.91 18.81 29.57 -169.99 -5.03 13.78 16 13 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 16 C 0.52 12.50 7.17 -12.54 -0.09 12.41 16 17 O -0.60 -15.62 16.59 5.25 0.09 -15.53 16 18 C -0.10 -2.29 5.16 -104.87 -0.54 -2.83 16 19 C -0.04 -0.78 7.96 -39.12 -0.31 -1.10 16 20 C -0.16 -2.73 10.00 -39.67 -0.40 -3.13 16 21 C -0.07 -1.15 10.09 -39.20 -0.40 -1.55 16 22 C -0.12 -2.09 6.35 -105.15 -0.67 -2.76 16 23 C -0.18 -2.71 6.32 -102.68 -0.65 -3.36 16 24 C -0.07 -0.77 10.17 36.01 0.37 -0.41 16 25 C 0.07 0.97 7.08 -81.75 -0.58 0.39 16 26 C -0.09 -0.89 10.18 36.01 0.37 -0.52 16 27 N -0.58 -10.11 6.04 -6.75 -0.04 -10.15 16 28 H 0.42 7.00 8.90 -40.82 -0.36 6.64 16 29 C 0.14 2.75 6.93 -83.74 -0.58 2.17 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 35 H 0.11 2.88 5.74 -51.93 -0.30 2.58 16 36 H 0.07 1.69 7.49 -51.93 -0.39 1.30 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.15 3.18 6.71 -52.49 -0.35 2.83 16 39 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.53 7.06 -51.93 -0.37 0.16 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.66 7.05 -51.93 -0.37 0.30 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -30.85 389.10 -8.26 -39.10 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.28 Total: 13.45 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.50 Total: 3.06 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.31 Total: -42.26 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.62 Total: -33.00 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.85 -8.26 -39.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.408 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds