Wall clock time and date at job start Wed Apr 1 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99949 * 2 1 4 4 O 1.20822 * 120.00095 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00252 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47173 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.46983 * 179.97438 * 6 5 3 8 8 C 1.36885 * 119.99750 * 264.15617 * 7 6 5 9 9 H 1.08000 * 119.99951 * 136.22483 * 8 7 6 10 10 C 1.39027 * 120.00158 * 316.22090 * 8 7 6 11 11 N 1.31377 * 119.99784 * 346.96717 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 166.97098 * 10 8 7 13 13 H 1.48498 * 109.47615 * 59.99794 * 12 10 8 14 14 H 1.48500 * 109.47360 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47016 * 299.99798 * 12 10 8 16 16 C 1.34777 * 119.99674 * 84.15547 * 7 6 5 17 17 O 1.21630 * 120.00196 * 5.64370 * 16 7 6 18 18 C 1.47390 * 119.99780 * 185.63928 * 16 7 6 19 19 C 1.39423 * 120.21454 * 312.85545 * 18 16 7 20 20 C 1.38299 * 120.48680 * 180.22914 * 19 18 16 21 21 C 1.37932 * 120.59862 * 359.46059 * 20 19 18 22 22 C 1.39561 * 119.99905 * 0.55955 * 21 20 19 23 23 C 1.46566 * 133.95136 * 179.75634 * 22 21 20 24 24 C 1.50702 * 126.55178 * 359.96885 * 23 22 21 25 25 C 1.34216 * 106.89117 * 179.97438 * 23 22 21 26 26 C 1.50711 * 125.05970 * 179.97438 * 25 23 22 27 27 N 1.36888 * 109.88197 * 0.02562 * 25 23 22 28 28 H 0.96992 * 125.01490 * 180.02562 * 27 25 23 29 29 C 1.37125 * 109.96714 * 359.97438 * 27 25 23 30 30 H 1.08996 * 109.47045 * 60.00413 * 1 2 3 31 31 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47200 * 300.00254 * 1 2 3 33 33 H 1.08997 * 109.46618 * 59.99306 * 5 3 2 34 34 H 1.08992 * 109.46774 * 299.99773 * 5 3 2 35 35 H 1.08995 * 109.47681 * 59.99685 * 6 5 3 36 36 H 1.09004 * 109.47095 * 299.99363 * 6 5 3 37 37 H 0.97006 * 119.99845 * 180.02562 * 11 10 8 38 38 H 1.08000 * 119.75613 * 359.95700 * 19 18 16 39 39 H 1.08004 * 119.69701 * 179.74298 * 20 19 18 40 40 H 1.07998 * 119.99705 * 180.23855 * 21 20 19 41 41 H 1.08998 * 109.47014 * 269.94967 * 24 23 22 42 42 H 1.08999 * 109.47162 * 29.95087 * 24 23 22 43 43 H 1.09002 * 109.46824 * 149.95347 * 24 23 22 44 44 H 1.09001 * 109.46828 * 270.00203 * 26 25 23 45 45 H 1.09002 * 109.46610 * 29.99984 * 26 25 23 46 46 H 1.08993 * 109.47097 * 149.99731 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1392 2.9760 1.1808 9 1 7.0258 2.3913 1.3772 10 6 5.6848 3.8885 2.1261 11 7 4.7731 4.7756 1.7976 12 14 6.3705 3.8533 3.8633 13 1 7.8374 4.0809 3.8213 14 1 5.7275 4.9206 4.6711 15 1 6.0923 2.5307 4.4786 16 6 6.1432 2.7344 -1.1595 17 8 5.5414 2.6981 -2.2159 18 6 7.6163 2.6864 -1.1486 19 6 8.3420 3.5888 -0.3721 20 6 9.7244 3.5519 -0.3612 21 6 10.4076 2.6155 -1.1090 22 6 9.7040 1.7017 -1.8948 23 6 10.1019 0.6103 -2.7885 24 6 11.5102 0.1744 -3.1011 25 6 8.9722 0.0735 -3.2754 26 6 8.9088 -1.0827 -4.2401 27 7 7.8862 0.7331 -2.7661 28 1 6.9616 0.5247 -2.9721 29 6 8.2984 1.7311 -1.9210 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.9564 0.7805 -0.8891 34 1 3.9557 0.7810 0.8908 35 1 3.6100 3.2368 0.8892 36 1 3.6108 3.2356 -0.8907 37 1 4.4563 5.4125 2.4572 38 1 7.8208 4.3250 0.2219 39 1 10.2739 4.2597 0.2417 40 1 11.4872 2.5930 -1.0903 41 1 11.8774 0.7256 -3.9667 42 1 12.1517 0.3758 -2.2432 43 1 11.5199 -0.8934 -3.3194 44 1 8.9215 -0.7041 -5.2622 45 1 9.7685 -1.7342 -4.0832 46 1 7.9908 -1.6458 -4.0725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:30 Heat of formation + Delta-G solvation = -86.498053 kcal Electronic energy + Delta-G solvation = -30388.575438 eV Core-core repulsion = 26242.882116 eV Total energy + Delta-G solvation = -4145.693322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31510 -41.61458 -40.40591 -37.80218 -37.61667 -36.86937 -34.08725 -33.87419 -32.77520 -31.71785 -30.82340 -28.72380 -28.58948 -27.04297 -26.56911 -25.65066 -23.37314 -22.53511 -21.82312 -21.11930 -20.10901 -19.22470 -18.62318 -18.12879 -17.83554 -17.67381 -17.51874 -16.81866 -16.37684 -16.04889 -15.88429 -15.77592 -15.41621 -15.10920 -14.89242 -14.50773 -14.26778 -13.94029 -13.84073 -13.80326 -13.59223 -13.50642 -13.43834 -13.20388 -13.05645 -12.92522 -12.81465 -12.73578 -12.62641 -12.38356 -12.17131 -12.13432 -12.01632 -11.87859 -11.84326 -11.67023 -11.05394 -10.52573 -10.24043 -9.54174 -8.99553 -8.37631 -8.30025 -6.15597 0.06277 0.79682 1.06119 1.44824 1.48191 1.56002 1.58070 1.68517 2.10191 2.29189 2.33115 2.88593 2.98015 3.16452 3.75390 3.79852 3.94933 4.04026 4.13322 4.24699 4.27448 4.27914 4.32606 4.40632 4.48104 4.49975 4.53945 4.62551 4.65420 4.76955 4.85263 4.95456 4.99903 5.06821 5.13758 5.18493 5.19632 5.29895 5.33089 5.36521 5.47566 5.67490 5.74217 5.90540 5.95050 6.04609 6.32239 6.38106 6.63455 6.68907 7.06627 7.44812 7.89089 8.72670 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008942 B = 0.004257 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.576777 B = 6576.500774 C = 8988.993395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.114 4.114 6 C 0.140 3.860 7 N -0.436 5.436 8 C -0.346 4.346 9 H 0.095 0.905 10 C 0.008 3.992 11 N -0.896 5.896 12 Si 0.978 3.022 13 H -0.256 1.256 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.508 3.492 17 O -0.633 6.633 18 C -0.139 4.139 19 C -0.051 4.051 20 C -0.161 4.161 21 C -0.056 4.056 22 C -0.131 4.131 23 C -0.187 4.187 24 C -0.067 4.067 25 C 0.064 3.936 26 C -0.087 4.087 27 N -0.591 5.591 28 H 0.413 0.587 29 C 0.112 3.888 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.272 0.728 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -12.825 -4.259 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.153 4.153 6 C 0.016 3.984 7 N -0.152 5.152 8 C -0.474 4.474 9 H 0.113 0.887 10 C -0.195 4.195 11 N -0.532 5.532 12 Si 0.801 3.199 13 H -0.180 1.180 14 H -0.212 1.212 15 H -0.190 1.190 16 C 0.299 3.701 17 O -0.522 6.522 18 C -0.144 4.144 19 C -0.071 4.071 20 C -0.180 4.180 21 C -0.074 4.074 22 C -0.135 4.135 23 C -0.193 4.193 24 C -0.124 4.124 25 C -0.043 4.043 26 C -0.144 4.144 27 N -0.193 5.193 28 H 0.250 0.750 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.275 -12.455 -4.706 15.173 hybrid contribution -1.392 0.808 0.871 1.830 sum 5.883 -11.647 -3.835 13.601 Atomic orbital electron populations 1.23598 0.74636 1.05951 1.02498 1.86502 1.25258 1.32203 1.83834 1.23726 0.91925 0.81356 0.71134 1.90649 1.67779 1.37480 1.46610 1.21661 0.87166 1.00563 1.05927 1.20859 0.82309 0.92820 1.02434 1.43400 1.04374 1.61773 1.05628 1.19542 1.12366 1.21969 0.93478 0.88740 1.26277 0.96545 0.93004 1.03710 1.70000 1.30296 1.16677 1.36257 0.85214 0.79387 0.78113 0.77223 1.17969 1.21183 1.19028 1.18928 0.88118 0.79475 0.83575 1.90577 1.71419 1.58104 1.32085 1.18829 0.91997 1.00421 1.03168 1.21241 0.94650 0.96777 0.94478 1.21079 0.92841 1.01419 1.02644 1.20887 1.00504 0.92405 0.93619 1.19429 0.90786 1.00479 1.02855 1.20421 0.96391 0.99170 1.03362 1.20130 0.88976 1.01538 1.01744 1.20838 0.85274 0.98146 1.00071 1.20574 1.04739 0.92796 0.96244 1.41782 1.09088 1.28690 1.39743 0.75037 1.18179 0.94193 0.92260 0.95179 0.92140 0.84280 0.92033 0.88180 0.86367 0.89066 0.94860 0.91831 0.86113 0.83319 0.82793 0.91251 0.91400 0.90056 0.89502 0.87509 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.35 10.57 -51.36 -0.54 -11.89 16 3 C 0.47 18.44 7.96 71.24 0.57 19.01 16 4 O -0.54 -24.07 15.73 21.98 0.35 -23.73 16 5 C -0.11 -4.66 6.09 29.85 0.18 -4.48 16 6 C 0.14 7.06 4.18 86.38 0.36 7.42 16 7 N -0.44 -22.39 2.49 -639.30 -1.59 -23.98 16 8 C -0.35 -17.29 6.52 84.09 0.55 -16.74 16 9 H 0.10 4.61 6.90 -2.91 -0.02 4.59 16 10 C 0.01 0.40 5.05 84.95 0.43 0.83 16 11 N -0.90 -48.53 11.50 21.68 0.25 -48.28 16 12 Si 0.98 38.99 29.57 68.60 2.03 41.02 16 13 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 14 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 16 C 0.51 26.17 7.17 86.65 0.62 26.79 16 17 O -0.63 -35.03 16.59 -4.13 -0.07 -35.10 16 18 C -0.14 -6.32 5.16 -20.03 -0.10 -6.42 16 19 C -0.05 -2.16 7.96 22.57 0.18 -1.98 16 20 C -0.16 -5.33 10.00 22.21 0.22 -5.11 16 21 C -0.06 -1.68 10.09 22.52 0.23 -1.45 16 22 C -0.13 -4.46 6.35 -20.21 -0.13 -4.59 16 23 C -0.19 -5.12 6.32 -18.61 -0.12 -5.24 16 24 C -0.07 -1.19 10.17 71.24 0.72 -0.47 16 25 C 0.06 1.73 7.08 40.85 0.29 2.02 16 26 C -0.09 -1.45 10.18 71.24 0.73 -0.73 16 27 N -0.59 -20.61 6.04 -175.26 -1.06 -21.66 16 28 H 0.41 14.38 8.90 -92.71 -0.82 13.55 16 29 C 0.11 4.49 6.93 39.45 0.27 4.76 16 30 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 35 H 0.09 4.99 5.74 -2.39 -0.01 4.98 16 36 H 0.03 1.84 7.49 -2.38 -0.02 1.83 16 37 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 38 H 0.12 5.57 6.71 -2.91 -0.02 5.55 16 39 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.08 7.06 -2.39 -0.02 1.06 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.11 1.26 7.05 -2.39 -0.02 1.25 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.15 389.10 5.76 -66.39 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: 0.20 Total: 41.80 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 6.20 Total: 15.43 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -2.40 Total: -93.92 kcal Atomic # 8 Polarization: -70.46 SS G_CDS: -0.27 Total: -70.72 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -72.15 5.76 -66.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.109 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds