Wall clock time and date at job start Wed Apr 1 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 116.99933 * 2 1 4 4 O 1.20829 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47454 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47528 * 184.98692 * 6 5 3 8 8 C 1.37094 * 120.00195 * 273.30274 * 7 6 5 9 9 H 1.08002 * 119.99897 * 18.15451 * 8 7 6 10 10 C 1.38950 * 120.00265 * 198.15328 * 8 7 6 11 11 N 1.31415 * 120.00012 * 13.65542 * 10 8 7 12 12 Si 1.86800 * 119.99972 * 193.65747 * 10 8 7 13 13 H 1.48498 * 109.47044 * 60.00161 * 12 10 8 14 14 H 1.48503 * 109.46854 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47298 * 299.99561 * 12 10 8 16 16 C 1.34773 * 119.99991 * 93.29604 * 7 6 5 17 17 O 1.21296 * 120.00395 * 242.37933 * 16 7 6 18 18 C 1.50705 * 120.00026 * 62.66137 * 16 7 6 19 19 C 1.53001 * 109.47026 * 24.28066 * 18 16 7 20 20 C 1.52997 * 109.47384 * 144.28370 * 18 16 7 21 21 C 1.50698 * 109.46678 * 264.28398 * 18 16 7 22 22 C 1.38361 * 119.85340 * 353.85599 * 21 18 16 23 23 C 1.37943 * 120.15555 * 179.76647 * 22 21 18 24 24 C 1.39634 * 119.84452 * 0.52914 * 23 22 21 25 25 C 1.43197 * 120.14979 * 179.70598 * 24 23 22 26 26 N 7.20270 * 83.93167 * 293.31651 * 2 1 3 27 27 C 1.39631 * 119.70024 * 359.72045 * 24 23 22 28 28 C 1.37943 * 119.84376 * 0.02562 * 27 24 23 29 29 H 1.09002 * 109.47105 * 60.00237 * 1 2 3 30 30 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47174 * 300.00478 * 1 2 3 32 32 H 1.09000 * 109.47268 * 59.99571 * 5 3 2 33 33 H 1.09000 * 109.46746 * 299.99834 * 5 3 2 34 34 H 1.08999 * 109.47017 * 64.98555 * 6 5 3 35 35 H 1.09005 * 109.47497 * 304.98834 * 6 5 3 36 36 H 0.97000 * 120.00261 * 184.98082 * 11 10 8 37 37 H 1.09000 * 109.46754 * 54.15829 * 19 18 16 38 38 H 1.08999 * 109.47037 * 174.16321 * 19 18 16 39 39 H 1.09001 * 109.46908 * 294.16500 * 19 18 16 40 40 H 1.09001 * 109.47111 * 64.78113 * 20 18 16 41 41 H 1.09005 * 109.46769 * 184.77624 * 20 18 16 42 42 H 1.08996 * 109.46805 * 304.77906 * 20 18 16 43 43 H 1.08003 * 119.92120 * 359.97438 * 22 21 18 44 44 H 1.08004 * 120.07594 * 180.25105 * 23 22 21 45 45 H 1.07996 * 120.07728 * 179.97438 * 27 24 23 46 46 H 1.08004 * 119.92167 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4581 2.8202 -0.1197 8 6 6.2422 2.7600 1.0033 9 1 5.8366 2.3690 1.9248 10 6 7.5586 3.2020 0.9561 11 7 7.9754 3.9171 -0.0647 12 14 8.7360 2.7799 2.3435 13 1 8.8569 1.3043 2.4583 14 1 10.0704 3.3645 2.0555 15 1 8.2169 3.3348 3.6193 16 6 6.0287 2.9511 -1.3336 17 8 6.7692 2.0864 -1.7522 18 6 5.7517 4.1748 -2.1684 19 6 5.3397 5.3319 -1.2562 20 6 7.0136 4.5603 -2.9429 21 6 4.6374 3.8790 -3.1389 22 6 4.1349 2.5938 -3.2398 23 6 3.1117 2.3171 -4.1226 24 6 2.5905 3.3353 -4.9234 25 6 1.5326 3.0540 -5.8466 26 7 0.6906 2.8349 -6.5774 27 6 3.1058 4.6290 -4.8203 28 6 4.1254 4.8927 -3.9295 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9556 0.7810 0.8909 34 1 3.6860 3.2142 0.9306 35 1 3.5384 3.2571 -0.8427 36 1 8.9108 4.1644 -0.1339 37 1 6.0999 5.4779 -0.4888 38 1 5.2400 6.2426 -1.8469 39 1 4.3857 5.0995 -0.7829 40 1 7.2586 3.7714 -3.6541 41 1 6.8395 5.4926 -3.4802 42 1 7.8415 4.6915 -2.2462 43 1 4.5425 1.8061 -2.6234 44 1 2.7177 1.3143 -4.1973 45 1 2.7075 5.4210 -5.4370 46 1 4.5252 5.8928 -3.8489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871346415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:02 Heat of formation + Delta-G solvation = -47.913536 kcal Electronic energy + Delta-G solvation = -31529.483609 eV Core-core repulsion = 27385.463438 eV Total energy + Delta-G solvation = -4144.020172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.42934 -40.04864 -38.44386 -36.51002 -36.37888 -34.85855 -34.29602 -32.44219 -31.00561 -30.30404 -29.92078 -27.58815 -26.37671 -25.19338 -24.24588 -23.65265 -22.67121 -21.14027 -20.35719 -19.02896 -18.67213 -17.53228 -17.00850 -16.40043 -16.35373 -15.54411 -15.41969 -15.04194 -14.63252 -14.52047 -14.17044 -13.98546 -13.92487 -13.67481 -13.41501 -13.38042 -13.01670 -12.76194 -12.64771 -12.55074 -12.32482 -12.12167 -11.86976 -11.70933 -11.52199 -11.36298 -11.22926 -11.08580 -10.95193 -10.85896 -10.75406 -10.67645 -10.66788 -10.30351 -10.28324 -10.24651 -10.04911 -9.11638 -8.92902 -8.54488 -8.42020 -7.44247 -6.25072 -3.69141 0.86577 1.43883 2.41761 2.65490 2.85419 3.00437 3.22932 3.32114 3.33754 3.67393 3.91980 3.95662 4.23805 4.71424 4.91918 4.95128 5.04342 5.09489 5.14472 5.15967 5.17935 5.41530 5.46751 5.48718 5.52699 5.63783 5.71856 5.80099 5.85811 5.94888 6.07371 6.16169 6.26618 6.32071 6.36231 6.37754 6.46748 6.48431 6.60927 6.71360 6.75348 6.86307 6.91114 7.21661 7.28585 7.47530 7.50718 7.92812 8.04078 8.93926 9.18291 9.44229 9.90545 10.88911 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.005012 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.735515 B = 5585.417075 C = 7918.110729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.135 4.135 6 C 0.145 3.855 7 N -0.552 5.552 8 C -0.290 4.290 9 H 0.083 0.917 10 C 0.028 3.972 11 N -0.886 5.886 12 Si 0.919 3.081 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.280 1.280 16 C 0.606 3.394 17 O -0.519 6.519 18 C -0.043 4.043 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.020 4.020 22 C -0.123 4.123 23 C -0.064 4.064 24 C -0.051 4.051 25 C 0.265 3.735 26 N -0.435 5.435 27 C -0.068 4.068 28 C -0.116 4.116 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.269 0.731 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -0.024 -2.982 8.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.396 6.396 5 C -0.175 4.175 6 C 0.019 3.981 7 N -0.281 5.281 8 C -0.416 4.416 9 H 0.101 0.899 10 C -0.174 4.174 11 N -0.529 5.529 12 Si 0.748 3.252 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.206 1.206 16 C 0.396 3.604 17 O -0.392 6.392 18 C -0.048 4.048 19 C -0.183 4.183 20 C -0.176 4.176 21 C -0.022 4.022 22 C -0.141 4.141 23 C -0.085 4.085 24 C -0.054 4.054 25 C -0.050 4.050 26 N -0.111 5.111 27 C -0.088 4.088 28 C -0.134 4.134 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.246 -0.392 -4.379 10.238 hybrid contribution 0.716 -0.117 1.022 1.253 sum -8.530 -0.508 -3.358 9.181 Atomic orbital electron populations 1.23199 0.77105 1.03247 1.02378 1.86552 1.22907 1.34224 1.84375 1.24124 0.92409 0.81015 0.71739 1.90647 1.67355 1.36214 1.45358 1.22194 0.85569 1.03575 1.06127 1.20820 0.83587 0.91163 1.02565 1.42615 1.01884 1.78736 1.04881 1.19192 0.94339 1.38940 0.89163 0.89886 1.24938 0.98515 0.95618 0.98300 1.69230 1.16222 1.35607 1.31793 0.86111 0.79784 0.78591 0.80748 1.20554 1.21303 1.20564 1.19081 0.77158 0.84247 0.79943 1.90442 1.36340 1.42113 1.70325 1.20002 0.93324 0.97731 0.93735 1.21829 1.02628 0.94352 0.99470 1.21684 0.97246 0.98928 0.99751 1.20359 0.94516 0.92946 0.94331 1.21284 0.96478 0.97176 0.99114 1.21090 0.95327 0.98105 0.93973 1.15931 0.95962 0.95462 0.98062 1.25817 0.92880 0.93303 0.92954 1.81220 1.11036 1.08044 1.10799 1.21076 0.95619 0.94467 0.97646 1.20941 0.96705 0.99797 0.95930 0.92095 0.88514 0.92076 0.88190 0.87252 0.91193 0.91581 0.91958 0.88801 0.94222 0.93108 0.93283 0.94027 0.88767 0.84804 0.85420 0.85280 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.95 10.57 -39.24 -0.41 -5.36 16 3 C 0.46 7.08 7.96 36.01 0.29 7.37 16 4 O -0.51 -8.73 15.67 -18.75 -0.29 -9.03 16 5 C -0.13 -2.14 6.11 -27.89 -0.17 -2.31 16 6 C 0.14 2.61 3.43 -4.05 -0.01 2.59 16 7 N -0.55 -11.88 1.86 -114.81 -0.21 -12.10 16 8 C -0.29 -6.90 9.65 -14.93 -0.14 -7.04 16 9 H 0.08 1.90 7.87 -52.49 -0.41 1.49 16 10 C 0.03 0.68 5.15 -17.47 -0.09 0.59 16 11 N -0.89 -21.98 8.06 55.50 0.45 -21.53 16 12 Si 0.92 19.94 29.58 -169.99 -5.03 14.91 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.61 13.22 1.00 -10.98 -0.01 13.21 16 17 O -0.52 -13.13 16.20 5.54 0.09 -13.04 16 18 C -0.04 -0.80 0.43 -156.81 -0.07 -0.86 16 19 C -0.13 -2.22 7.40 37.16 0.28 -1.95 16 20 C -0.12 -2.16 7.84 37.16 0.29 -1.87 16 21 C -0.02 -0.32 4.06 -104.53 -0.42 -0.74 16 22 C -0.12 -1.90 7.81 -39.64 -0.31 -2.21 16 23 C -0.06 -0.86 9.76 -39.17 -0.38 -1.24 16 24 C -0.05 -0.65 5.73 -106.93 -0.61 -1.26 16 25 C 0.27 3.58 15.33 -22.47 -0.34 3.24 16 26 N -0.44 -6.61 18.54 41.85 0.78 -5.83 16 27 C -0.07 -0.79 9.76 -39.17 -0.38 -1.17 16 28 C -0.12 -1.49 8.84 -39.64 -0.35 -1.84 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.10 1.57 7.01 -51.93 -0.36 1.21 16 33 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.07 1.17 4.83 -51.93 -0.25 0.91 16 36 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 37 H 0.09 1.95 6.97 -51.93 -0.36 1.59 16 38 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 39 H 0.05 0.89 6.15 -51.93 -0.32 0.57 16 40 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 41 H 0.04 0.62 7.92 -51.93 -0.41 0.21 16 42 H 0.09 1.96 6.35 -51.93 -0.33 1.63 16 43 H 0.13 2.30 4.83 -52.48 -0.25 2.05 16 44 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.49 7.23 -52.48 -0.38 1.12 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -28.97 382.11 -6.23 -35.19 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.97 Total: 5.09 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.38 Total: 5.93 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 1.01 Total: -39.46 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.62 Total: -27.43 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.97 -6.23 -35.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.719 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds