Wall clock time and date at job start Wed Apr 1 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 116.99933 * 2 1 4 4 O 1.20829 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47454 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47528 * 184.98692 * 6 5 3 8 8 C 1.37094 * 120.00195 * 273.30274 * 7 6 5 9 9 H 1.08002 * 119.99897 * 18.15451 * 8 7 6 10 10 C 1.38950 * 120.00265 * 198.15328 * 8 7 6 11 11 N 1.31415 * 120.00012 * 13.65542 * 10 8 7 12 12 Si 1.86800 * 119.99972 * 193.65747 * 10 8 7 13 13 H 1.48498 * 109.47044 * 60.00161 * 12 10 8 14 14 H 1.48503 * 109.46854 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47298 * 299.99561 * 12 10 8 16 16 C 1.34773 * 119.99991 * 93.29604 * 7 6 5 17 17 O 1.21296 * 120.00395 * 242.37933 * 16 7 6 18 18 C 1.50705 * 120.00026 * 62.66137 * 16 7 6 19 19 C 1.53001 * 109.47026 * 24.28066 * 18 16 7 20 20 C 1.52997 * 109.47384 * 144.28370 * 18 16 7 21 21 C 1.50698 * 109.46678 * 264.28398 * 18 16 7 22 22 C 1.38361 * 119.85340 * 353.85599 * 21 18 16 23 23 C 1.37943 * 120.15555 * 179.76647 * 22 21 18 24 24 C 1.39634 * 119.84452 * 0.52914 * 23 22 21 25 25 C 1.43197 * 120.14979 * 179.70598 * 24 23 22 26 26 N 7.20270 * 83.93167 * 293.31651 * 2 1 3 27 27 C 1.39631 * 119.70024 * 359.72045 * 24 23 22 28 28 C 1.37943 * 119.84376 * 0.02562 * 27 24 23 29 29 H 1.09002 * 109.47105 * 60.00237 * 1 2 3 30 30 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47174 * 300.00478 * 1 2 3 32 32 H 1.09000 * 109.47268 * 59.99571 * 5 3 2 33 33 H 1.09000 * 109.46746 * 299.99834 * 5 3 2 34 34 H 1.08999 * 109.47017 * 64.98555 * 6 5 3 35 35 H 1.09005 * 109.47497 * 304.98834 * 6 5 3 36 36 H 0.97000 * 120.00261 * 184.98082 * 11 10 8 37 37 H 1.09000 * 109.46754 * 54.15829 * 19 18 16 38 38 H 1.08999 * 109.47037 * 174.16321 * 19 18 16 39 39 H 1.09001 * 109.46908 * 294.16500 * 19 18 16 40 40 H 1.09001 * 109.47111 * 64.78113 * 20 18 16 41 41 H 1.09005 * 109.46769 * 184.77624 * 20 18 16 42 42 H 1.08996 * 109.46805 * 304.77906 * 20 18 16 43 43 H 1.08003 * 119.92120 * 359.97438 * 22 21 18 44 44 H 1.08004 * 120.07594 * 180.25105 * 23 22 21 45 45 H 1.07996 * 120.07728 * 179.97438 * 27 24 23 46 46 H 1.08004 * 119.92167 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4581 2.8202 -0.1197 8 6 6.2422 2.7600 1.0033 9 1 5.8366 2.3690 1.9248 10 6 7.5586 3.2020 0.9561 11 7 7.9754 3.9171 -0.0647 12 14 8.7360 2.7799 2.3435 13 1 8.8569 1.3043 2.4583 14 1 10.0704 3.3645 2.0555 15 1 8.2169 3.3348 3.6193 16 6 6.0287 2.9511 -1.3336 17 8 6.7692 2.0864 -1.7522 18 6 5.7517 4.1748 -2.1684 19 6 5.3397 5.3319 -1.2562 20 6 7.0136 4.5603 -2.9429 21 6 4.6374 3.8790 -3.1389 22 6 4.1349 2.5938 -3.2398 23 6 3.1117 2.3171 -4.1226 24 6 2.5905 3.3353 -4.9234 25 6 1.5326 3.0540 -5.8466 26 7 0.6906 2.8349 -6.5774 27 6 3.1058 4.6290 -4.8203 28 6 4.1254 4.8927 -3.9295 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9556 0.7810 0.8909 34 1 3.6860 3.2142 0.9306 35 1 3.5384 3.2571 -0.8427 36 1 8.9108 4.1644 -0.1339 37 1 6.0999 5.4779 -0.4888 38 1 5.2400 6.2426 -1.8469 39 1 4.3857 5.0995 -0.7829 40 1 7.2586 3.7714 -3.6541 41 1 6.8395 5.4926 -3.4802 42 1 7.8415 4.6915 -2.2462 43 1 4.5425 1.8061 -2.6234 44 1 2.7177 1.3143 -4.1973 45 1 2.7075 5.4210 -5.4370 46 1 4.5252 5.8928 -3.8489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871346415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:02 Heat of formation + Delta-G solvation = -61.455936 kcal Electronic energy + Delta-G solvation = -31530.070852 eV Core-core repulsion = 27385.463438 eV Total energy + Delta-G solvation = -4144.607414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74537 -41.28237 -39.79698 -37.68629 -37.57209 -36.48037 -35.70453 -34.13119 -32.08031 -31.77693 -31.11941 -28.58904 -27.85051 -26.87636 -25.57317 -24.95024 -23.82349 -22.51327 -21.62500 -20.48807 -19.86473 -18.88628 -18.41715 -17.57887 -17.56416 -17.00781 -16.90775 -16.39149 -16.17815 -15.79628 -15.55380 -15.24940 -15.08452 -15.02347 -14.57424 -14.45256 -14.25404 -14.04304 -13.86645 -13.79432 -13.60591 -13.43613 -13.24452 -12.95306 -12.91341 -12.82372 -12.75084 -12.66843 -12.56907 -12.41225 -12.18788 -12.03085 -11.96116 -11.76675 -11.69895 -11.55092 -11.48781 -10.89671 -10.15690 -9.95345 -9.67900 -9.17466 -8.09967 -5.54339 -0.21386 0.40933 1.18811 1.47614 1.54257 1.57698 1.58600 1.71812 1.91721 2.02829 2.50361 2.84296 2.89860 3.21083 3.33114 3.81571 3.82116 3.91182 3.95828 4.08753 4.23347 4.25797 4.33902 4.36145 4.38257 4.43787 4.54584 4.60397 4.61313 4.72930 4.81782 4.89190 5.00755 5.03748 5.10098 5.12169 5.22419 5.24572 5.30922 5.34811 5.39493 5.57596 5.65236 5.74860 5.80591 5.86943 6.22483 6.41634 6.74545 7.12574 7.45947 7.73057 8.14068 9.01460 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.005012 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.735515 B = 5585.417075 C = 7918.110729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.475 3.525 4 O -0.528 6.528 5 C -0.129 4.129 6 C 0.150 3.850 7 N -0.563 5.563 8 C -0.299 4.299 9 H 0.087 0.913 10 C -0.018 4.018 11 N -0.898 5.898 12 Si 0.970 3.030 13 H -0.287 1.287 14 H -0.293 1.293 15 H -0.269 1.269 16 C 0.607 3.393 17 O -0.567 6.567 18 C -0.039 4.039 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.036 4.036 22 C -0.138 4.138 23 C -0.061 4.061 24 C -0.048 4.048 25 C 0.285 3.715 26 N -0.463 5.463 27 C -0.050 4.050 28 C -0.109 4.109 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.141 0.859 45 H 0.164 0.836 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 0.823 -3.859 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.319 3.681 4 O -0.417 6.417 5 C -0.168 4.168 6 C 0.025 3.975 7 N -0.292 5.292 8 C -0.427 4.427 9 H 0.104 0.896 10 C -0.217 4.217 11 N -0.541 5.541 12 Si 0.798 3.202 13 H -0.214 1.214 14 H -0.220 1.220 15 H -0.194 1.194 16 C 0.400 3.600 17 O -0.443 6.443 18 C -0.043 4.043 19 C -0.174 4.174 20 C -0.171 4.171 21 C -0.037 4.037 22 C -0.156 4.156 23 C -0.081 4.081 24 C -0.051 4.051 25 C -0.029 4.029 26 N -0.139 5.139 27 C -0.070 4.070 28 C -0.127 4.127 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.159 0.841 45 H 0.182 0.818 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.195 0.451 -5.240 12.369 hybrid contribution 1.220 -0.453 1.280 1.826 sum -9.975 -0.002 -3.960 10.732 Atomic orbital electron populations 1.23546 0.74866 1.05584 1.02589 1.86525 1.25025 1.32939 1.83815 1.23755 0.91875 0.81267 0.71250 1.90637 1.67666 1.36945 1.46499 1.21978 0.86659 1.02000 1.06207 1.20828 0.81639 0.92574 1.02483 1.42737 1.03135 1.78959 1.04408 1.19455 0.94863 1.38350 0.89999 0.89553 1.25596 0.99813 0.96147 1.00151 1.69362 1.15669 1.36244 1.32784 0.85314 0.77985 0.77596 0.79312 1.21367 1.21951 1.19424 1.19733 0.75745 0.84492 0.80004 1.90407 1.38482 1.43915 1.71543 1.19856 0.94556 0.95925 0.93997 1.21710 1.01134 0.95594 0.98920 1.21607 0.96310 1.00198 0.98946 1.20190 0.94494 0.93978 0.95088 1.21101 0.97719 0.96725 1.00085 1.21151 0.94528 0.99134 0.93301 1.15973 0.95641 0.95920 0.97596 1.25754 0.92370 0.92456 0.92352 1.81255 1.11947 1.08915 1.11758 1.21406 0.94222 0.94671 0.96740 1.21133 0.96534 0.99971 0.95057 0.92014 0.85192 0.91778 0.88317 0.87055 0.91599 0.91042 0.92786 0.92280 0.90802 0.93289 0.94602 0.90391 0.91789 0.87255 0.84078 0.81820 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.46 10.57 -51.35 -0.54 -10.00 16 3 C 0.47 14.15 7.96 71.24 0.57 14.72 16 4 O -0.53 -17.66 15.67 21.95 0.34 -17.32 16 5 C -0.13 -4.11 6.11 29.85 0.18 -3.93 16 6 C 0.15 5.46 3.43 86.38 0.30 5.76 16 7 N -0.56 -24.86 1.86 -635.55 -1.18 -26.04 16 8 C -0.30 -14.61 9.65 84.04 0.81 -13.80 16 9 H 0.09 4.02 7.87 -2.91 -0.02 4.00 16 10 C -0.02 -0.90 5.15 84.93 0.44 -0.46 16 11 N -0.90 -46.06 8.06 21.66 0.17 -45.89 16 12 Si 0.97 41.83 29.58 68.60 2.03 43.86 16 13 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 16 C 0.61 27.27 1.00 87.66 0.09 27.36 16 17 O -0.57 -29.96 16.20 -3.08 -0.05 -30.01 16 18 C -0.04 -1.43 0.43 -53.67 -0.02 -1.45 16 19 C -0.12 -4.02 7.40 71.98 0.53 -3.49 16 20 C -0.11 -4.10 7.84 71.98 0.56 -3.54 16 21 C -0.04 -1.09 4.06 -19.80 -0.08 -1.17 16 22 C -0.14 -4.22 7.81 22.23 0.17 -4.04 16 23 C -0.06 -1.52 9.76 22.54 0.22 -1.30 16 24 C -0.05 -1.07 5.73 -21.36 -0.12 -1.20 16 25 C 0.28 6.91 15.33 88.33 1.35 8.26 16 26 N -0.46 -13.00 18.54 19.01 0.35 -12.65 16 27 C -0.05 -0.96 9.76 22.54 0.22 -0.74 16 28 C -0.11 -2.43 8.84 22.23 0.20 -2.23 16 29 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.10 3.19 7.01 -2.39 -0.02 3.17 16 33 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.07 2.52 4.83 -2.38 -0.01 2.51 16 36 H 0.26 13.39 8.32 -92.71 -0.77 12.62 16 37 H 0.06 2.48 6.97 -2.39 -0.02 2.46 16 38 H 0.07 1.99 7.30 -2.39 -0.02 1.97 16 39 H 0.05 1.67 6.15 -2.39 -0.01 1.66 16 40 H 0.03 1.35 8.01 -2.39 -0.02 1.33 16 41 H 0.08 2.18 7.92 -2.38 -0.02 2.16 16 42 H 0.06 2.72 6.35 -2.39 -0.02 2.71 16 43 H 0.11 3.89 4.83 -2.91 -0.01 3.87 16 44 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 45 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.16 2.75 7.23 -2.91 -0.02 2.73 16 Total: -1.00 -64.79 382.11 8.76 -56.03 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.02 Total: 21.56 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.61 Total: 20.45 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.65 Total: -84.58 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -0.25 Total: -57.32 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -64.79 8.76 -56.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.426 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds