Wall clock time and date at job start Wed Apr 1 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47327 * 167.34646 * 3 2 1 5 5 N 1.46499 * 109.54376 * 305.35690 * 4 3 2 6 6 C 1.34773 * 119.99961 * 298.50713 * 5 4 3 7 7 O 1.21589 * 119.99689 * 5.09841 * 6 5 4 8 8 N 1.34770 * 120.00310 * 185.09944 * 6 5 4 9 9 C 1.39941 * 120.00311 * 175.30249 * 8 6 5 10 10 C 1.38956 * 120.03975 * 215.72410 * 9 8 6 11 11 C 1.38154 * 120.06960 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.14017 * 359.70507 * 11 10 9 13 13 C 1.38907 * 120.06608 * 0.55381 * 12 11 10 14 14 O 1.35753 * 120.03373 * 179.74480 * 13 12 11 15 15 C 1.34824 * 116.99695 * 354.26382 * 14 13 12 16 16 H 1.07999 * 120.00353 * 5.05164 * 15 14 13 17 17 C 1.38657 * 119.99715 * 185.06078 * 15 14 13 18 18 N 1.31556 * 119.99869 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47361 * 59.99682 * 19 17 15 21 21 H 1.48500 * 109.46804 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46893 * 299.99153 * 19 17 15 23 23 C 1.38707 * 120.03114 * 35.70963 * 9 8 6 24 24 C 1.53184 * 109.54114 * 65.53114 * 4 3 2 25 25 C 1.53275 * 109.06407 * 176.85453 * 24 4 3 26 26 O 1.42902 * 109.46114 * 302.44464 * 25 24 4 27 27 C 1.42904 * 114.09685 * 61.15902 * 26 25 24 28 28 C 1.53091 * 109.41551 * 298.83911 * 27 26 25 29 29 H 4.44648 * 5.63438 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47496 * 47.35094 * 3 2 1 31 31 H 1.09004 * 109.47450 * 287.35136 * 3 2 1 32 32 H 0.96998 * 120.00121 * 118.50420 * 5 4 3 33 33 H 0.97001 * 119.99994 * 355.30654 * 8 6 5 34 34 H 1.08002 * 119.96604 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.93049 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.96694 * 180.29758 * 12 11 10 37 37 H 0.97005 * 119.99891 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.07357 * 359.97438 * 23 9 8 39 39 H 1.09001 * 109.52015 * 296.84704 * 24 4 3 40 40 H 1.09000 * 109.52033 * 57.02995 * 24 4 3 41 41 H 1.09003 * 109.46103 * 182.45024 * 25 24 4 42 42 H 1.08996 * 109.46841 * 62.44605 * 25 24 4 43 43 H 1.08999 * 109.48128 * 178.85812 * 27 26 25 44 44 H 1.08996 * 109.49137 * 58.83345 * 27 26 25 45 45 H 1.08999 * 109.52733 * 297.70766 * 28 27 26 46 46 H 1.08995 * 109.57224 * 177.54432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4083 -0.3160 5 7 2.5654 1.8721 -1.5741 6 6 2.8063 1.2024 -2.7186 7 8 3.4359 0.1625 -2.6934 8 7 2.3495 1.6854 -3.8910 9 6 2.6825 1.0440 -5.0894 10 6 2.9038 1.7910 -6.2400 11 6 3.2321 1.1584 -7.4235 12 6 3.3473 -0.2178 -7.4658 13 6 3.1220 -0.9706 -6.3203 14 8 3.2304 -2.3231 -6.3639 15 6 3.4420 -2.8815 -7.5727 16 1 3.5990 -2.2539 -8.4375 17 6 3.4576 -4.2616 -7.7056 18 7 3.2666 -5.0260 -6.6521 19 14 3.7500 -5.0353 -9.3805 20 1 5.0754 -4.6100 -9.8977 21 1 3.7199 -6.5147 -9.2543 22 1 2.6876 -4.5966 -10.3207 23 6 2.7923 -0.3381 -5.1298 24 6 2.7620 2.3618 0.8166 25 6 3.3446 3.7498 0.5275 26 8 4.7635 3.6512 0.3896 27 6 5.1883 2.8089 -0.6838 28 6 4.6817 1.3843 -0.4439 29 1 -1.0502 -0.0003 0.0003 30 1 3.0097 -0.6954 -0.7559 31 1 3.0095 -0.3057 0.9809 32 1 2.0012 2.6611 -1.5835 33 1 1.7899 2.4776 -3.9041 34 1 2.8183 2.8672 -6.2092 35 1 3.4032 1.7412 -8.3166 36 1 3.6088 -0.7091 -8.3914 37 1 3.2779 -5.9916 -6.7450 38 1 2.6214 -0.9210 -4.2368 39 1 1.6756 2.4259 0.8779 40 1 3.1597 1.9896 1.7607 41 1 3.1054 4.4227 1.3510 42 1 2.9157 4.1386 -0.3960 43 1 6.2771 2.8040 -0.7331 44 1 4.7837 3.1852 -1.6234 45 1 5.1180 0.9924 0.4749 46 1 4.9669 0.7492 -1.2825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887242387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:37 Heat of formation + Delta-G solvation = -10.339252 kcal Electronic energy + Delta-G solvation = -30282.268568 eV Core-core repulsion = 26139.877739 eV Total energy + Delta-G solvation = -4142.390829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10928 -39.51959 -38.49602 -36.84672 -35.89236 -34.10824 -33.20746 -32.22004 -31.68812 -31.41180 -29.33759 -28.49714 -28.12471 -25.26507 -24.01869 -23.74476 -22.64316 -21.54343 -20.78397 -19.67777 -18.51431 -18.24817 -17.93923 -17.10530 -16.54463 -16.26549 -15.83761 -15.52714 -15.13675 -15.01599 -14.83691 -14.75767 -14.23707 -14.11561 -13.93265 -13.49639 -13.31277 -13.22737 -13.05560 -12.81911 -12.61651 -12.47955 -12.34709 -11.71145 -11.61289 -11.47899 -11.22391 -11.03562 -10.96817 -10.80051 -10.71878 -10.47139 -10.34626 -10.19609 -9.90797 -9.71098 -9.61780 -9.14778 -9.07970 -8.78150 -7.63318 -7.14395 -6.38672 -3.97800 2.12277 2.38852 2.62562 2.81629 2.89611 3.16426 3.17038 3.20447 3.34273 3.62408 3.98826 4.12503 4.19895 4.39770 4.52083 4.63668 4.65934 4.79267 4.86797 5.13860 5.16039 5.26714 5.37856 5.38167 5.42225 5.51722 5.56090 5.65315 5.68520 5.76583 5.86433 5.91265 6.01734 6.07516 6.13475 6.28188 6.40130 6.48857 6.56038 6.87717 6.93603 7.06248 7.10270 7.26060 7.38458 7.53205 7.64462 7.85883 8.04578 8.06897 8.69789 9.06184 9.78359 10.79214 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002737 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.011780 B =10227.905633 C =10959.082771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C -0.031 4.031 4 C 0.208 3.792 5 N -0.738 5.738 6 C 0.704 3.296 7 O -0.556 6.556 8 N -0.682 5.682 9 C 0.193 3.807 10 C -0.237 4.237 11 C -0.059 4.059 12 C -0.247 4.247 13 C 0.167 3.833 14 O -0.174 6.174 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.184 4.184 24 C -0.157 4.157 25 C 0.062 3.938 26 O -0.383 6.383 27 C 0.065 3.935 28 C -0.170 4.170 29 H 0.213 0.787 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.393 0.607 33 H 0.400 0.600 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.270 0.730 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 17.851 13.342 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.165 4.165 3 C -0.068 4.068 4 C 0.121 3.879 5 N -0.395 5.395 6 C 0.405 3.595 7 O -0.431 6.431 8 N -0.329 5.329 9 C 0.099 3.901 10 C -0.259 4.259 11 C -0.078 4.078 12 C -0.267 4.267 13 C 0.112 3.888 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.206 4.206 24 C -0.195 4.195 25 C -0.015 4.015 26 O -0.301 6.301 27 C -0.011 4.011 28 C -0.208 4.208 29 H 0.230 0.770 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.227 0.773 33 H 0.234 0.766 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.886 16.553 13.774 21.617 hybrid contribution -0.925 0.231 -1.122 1.472 sum -2.810 16.784 12.653 21.206 Atomic orbital electron populations 1.24778 0.95823 1.01247 1.02247 1.22865 0.94184 0.99947 0.99458 1.19336 0.85387 0.98090 1.04029 1.20034 0.92688 0.92841 0.82326 1.45223 1.55431 1.32586 1.06243 1.15910 0.80020 0.83560 0.80054 1.90945 1.44684 1.22333 1.85141 1.42483 1.54196 1.31995 1.04206 1.16929 0.98978 0.90590 0.83625 1.20236 1.14601 0.97958 0.93069 1.20474 0.97122 0.93910 0.96264 1.21167 1.11966 0.93962 0.99579 1.19153 0.91836 0.85135 0.92669 1.83995 1.77365 1.13863 1.32446 1.21291 1.50597 0.90424 0.84498 0.89087 1.25290 0.96720 0.95168 0.99348 1.70047 1.45374 1.05089 1.29087 0.85793 0.79174 0.78201 0.80308 1.19511 1.20322 1.19531 1.20183 1.10250 0.92274 0.97860 1.22555 1.02236 0.96088 0.98667 1.22569 0.81840 0.95847 1.01249 1.87935 1.21302 1.68031 1.52863 1.22544 1.00038 0.89119 0.89429 1.22661 0.94059 0.98907 1.05179 0.77020 0.86523 0.89071 0.77346 0.76622 0.87576 0.87139 0.85552 0.92017 0.84742 0.89989 0.89127 0.88701 0.93350 0.88678 0.93065 0.89991 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.56 19.25 29.55 0.57 -2.00 16 2 C -0.16 -2.05 11.84 -37.13 -0.44 -2.49 16 3 C -0.03 -0.36 4.49 -29.52 -0.13 -0.50 16 4 C 0.21 2.07 0.34 -131.63 -0.05 2.03 16 5 N -0.74 -7.70 3.62 -52.24 -0.19 -7.89 16 6 C 0.70 10.42 7.80 -86.93 -0.68 9.74 16 7 O -0.56 -10.61 10.12 5.29 0.05 -10.55 16 8 N -0.68 -9.72 5.34 -14.24 -0.08 -9.79 16 9 C 0.19 3.57 6.29 -83.72 -0.53 3.05 16 10 C -0.24 -4.05 9.96 -39.35 -0.39 -4.44 16 11 C -0.06 -1.08 10.03 -39.64 -0.40 -1.47 16 12 C -0.25 -5.47 9.17 -39.36 -0.36 -5.83 16 13 C 0.17 4.22 6.64 -39.13 -0.26 3.96 16 14 O -0.17 -5.17 9.76 0.06 0.00 -5.17 16 15 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 16 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 19 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.18 -4.24 8.64 -39.21 -0.34 -4.58 16 24 C -0.16 -1.17 4.73 -26.49 -0.13 -1.29 16 25 C 0.06 0.45 6.67 37.30 0.25 0.70 16 26 O -0.38 -3.81 10.77 -35.23 -0.38 -4.19 16 27 C 0.07 0.65 6.68 37.20 0.25 0.90 16 28 C -0.17 -1.81 4.74 -26.59 -0.13 -1.94 16 29 H 0.21 1.77 7.80 -54.08 -0.42 1.35 16 30 H 0.12 1.76 6.28 -51.93 -0.33 1.43 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.39 3.04 7.60 -40.82 -0.31 2.73 16 33 H 0.40 4.10 8.84 -40.82 -0.36 3.74 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 3.35 6.26 -52.49 -0.33 3.03 16 39 H 0.08 0.57 7.51 -51.93 -0.39 0.18 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.31 7.13 -51.93 -0.37 -0.06 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.43 6.19 -51.93 -0.32 1.11 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -34.87 377.74 -7.62 -42.49 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.89 Total: 12.83 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.56 Total: -14.09 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.49 Total: -42.87 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.33 Total: -19.91 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.87 -7.62 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887242387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.149 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds