Wall clock time and date at job start Wed Apr 1 2020 02:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47327 * 167.34646 * 3 2 1 5 5 N 1.46499 * 109.54376 * 305.35690 * 4 3 2 6 6 C 1.34773 * 119.99961 * 298.50713 * 5 4 3 7 7 O 1.21589 * 119.99689 * 5.09841 * 6 5 4 8 8 N 1.34770 * 120.00310 * 185.09944 * 6 5 4 9 9 C 1.39941 * 120.00311 * 175.30249 * 8 6 5 10 10 C 1.38956 * 120.03975 * 215.72410 * 9 8 6 11 11 C 1.38154 * 120.06960 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.14017 * 359.70507 * 11 10 9 13 13 C 1.38907 * 120.06608 * 0.55381 * 12 11 10 14 14 O 1.35753 * 120.03373 * 179.74480 * 13 12 11 15 15 C 1.34824 * 116.99695 * 354.26382 * 14 13 12 16 16 H 1.07999 * 120.00353 * 5.05164 * 15 14 13 17 17 C 1.38657 * 119.99715 * 185.06078 * 15 14 13 18 18 N 1.31556 * 119.99869 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47361 * 59.99682 * 19 17 15 21 21 H 1.48500 * 109.46804 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46893 * 299.99153 * 19 17 15 23 23 C 1.38707 * 120.03114 * 35.70963 * 9 8 6 24 24 C 1.53184 * 109.54114 * 65.53114 * 4 3 2 25 25 C 1.53275 * 109.06407 * 176.85453 * 24 4 3 26 26 O 1.42902 * 109.46114 * 302.44464 * 25 24 4 27 27 C 1.42904 * 114.09685 * 61.15902 * 26 25 24 28 28 C 1.53091 * 109.41551 * 298.83911 * 27 26 25 29 29 H 4.44648 * 5.63438 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47496 * 47.35094 * 3 2 1 31 31 H 1.09004 * 109.47450 * 287.35136 * 3 2 1 32 32 H 0.96998 * 120.00121 * 118.50420 * 5 4 3 33 33 H 0.97001 * 119.99994 * 355.30654 * 8 6 5 34 34 H 1.08002 * 119.96604 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.93049 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.96694 * 180.29758 * 12 11 10 37 37 H 0.97005 * 119.99891 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.07357 * 359.97438 * 23 9 8 39 39 H 1.09001 * 109.52015 * 296.84704 * 24 4 3 40 40 H 1.09000 * 109.52033 * 57.02995 * 24 4 3 41 41 H 1.09003 * 109.46103 * 182.45024 * 25 24 4 42 42 H 1.08996 * 109.46841 * 62.44605 * 25 24 4 43 43 H 1.08999 * 109.48128 * 178.85812 * 27 26 25 44 44 H 1.08996 * 109.49137 * 58.83345 * 27 26 25 45 45 H 1.08999 * 109.52733 * 297.70766 * 28 27 26 46 46 H 1.08995 * 109.57224 * 177.54432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4083 -0.3160 5 7 2.5654 1.8721 -1.5741 6 6 2.8063 1.2024 -2.7186 7 8 3.4359 0.1625 -2.6934 8 7 2.3495 1.6854 -3.8910 9 6 2.6825 1.0440 -5.0894 10 6 2.9038 1.7910 -6.2400 11 6 3.2321 1.1584 -7.4235 12 6 3.3473 -0.2178 -7.4658 13 6 3.1220 -0.9706 -6.3203 14 8 3.2304 -2.3231 -6.3639 15 6 3.4420 -2.8815 -7.5727 16 1 3.5990 -2.2539 -8.4375 17 6 3.4576 -4.2616 -7.7056 18 7 3.2666 -5.0260 -6.6521 19 14 3.7500 -5.0353 -9.3805 20 1 5.0754 -4.6100 -9.8977 21 1 3.7199 -6.5147 -9.2543 22 1 2.6876 -4.5966 -10.3207 23 6 2.7923 -0.3381 -5.1298 24 6 2.7620 2.3618 0.8166 25 6 3.3446 3.7498 0.5275 26 8 4.7635 3.6512 0.3896 27 6 5.1883 2.8089 -0.6838 28 6 4.6817 1.3843 -0.4439 29 1 -1.0502 -0.0003 0.0003 30 1 3.0097 -0.6954 -0.7559 31 1 3.0095 -0.3057 0.9809 32 1 2.0012 2.6611 -1.5835 33 1 1.7899 2.4776 -3.9041 34 1 2.8183 2.8672 -6.2092 35 1 3.4032 1.7412 -8.3166 36 1 3.6088 -0.7091 -8.3914 37 1 3.2779 -5.9916 -6.7450 38 1 2.6214 -0.9210 -4.2368 39 1 1.6756 2.4259 0.8779 40 1 3.1597 1.9896 1.7607 41 1 3.1054 4.4227 1.3510 42 1 2.9157 4.1386 -0.3960 43 1 6.2771 2.8040 -0.7331 44 1 4.7837 3.1852 -1.6234 45 1 5.1180 0.9924 0.4749 46 1 4.9669 0.7492 -1.2825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887242387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:36 Heat of formation + Delta-G solvation = -35.186118 kcal Electronic energy + Delta-G solvation = -30283.346008 eV Core-core repulsion = 26139.877739 eV Total energy + Delta-G solvation = -4143.468270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17373 -40.88474 -39.93909 -38.30420 -37.02339 -35.53429 -34.30383 -34.16154 -32.71223 -32.12322 -31.02806 -29.74267 -29.29406 -27.31668 -24.80199 -24.67696 -23.92474 -23.13374 -22.18971 -20.66421 -19.91013 -19.69449 -18.95212 -18.89129 -17.50387 -17.01409 -16.98306 -16.75921 -16.61549 -16.33395 -16.19646 -15.92174 -15.62849 -15.46694 -15.43573 -15.10839 -14.58697 -14.24548 -14.16817 -13.99054 -13.84874 -13.57465 -13.48115 -13.23139 -13.08374 -12.92530 -12.62729 -12.37143 -12.30761 -12.16801 -11.86847 -11.61106 -11.46261 -11.33981 -11.18419 -10.99612 -10.77782 -10.73788 -10.57021 -10.07792 -9.27755 -8.83008 -8.45608 -6.15089 0.50299 0.73787 1.34089 1.45894 1.50819 1.52427 1.86614 1.93808 2.09511 2.18792 2.85723 2.93461 3.05842 3.20714 3.34532 3.57250 3.65598 3.77023 3.89282 4.00225 4.17308 4.23875 4.37921 4.39066 4.44880 4.49710 4.62859 4.69202 4.72300 4.76610 4.77734 4.79208 4.94021 5.00109 5.06278 5.08209 5.12332 5.12760 5.19013 5.43008 5.50734 5.52529 5.66777 5.77176 5.97849 6.04999 6.23417 6.25141 6.71305 6.97981 7.00251 7.53608 7.81975 8.78163 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002737 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.011780 B =10227.905633 C =10959.082771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C -0.031 4.031 4 C 0.209 3.791 5 N -0.715 5.715 6 C 0.699 3.301 7 O -0.601 6.601 8 N -0.669 5.669 9 C 0.205 3.795 10 C -0.205 4.205 11 C -0.049 4.049 12 C -0.258 4.258 13 C 0.126 3.874 14 O -0.236 6.236 15 C -0.414 4.414 16 H 0.106 0.894 17 C -0.027 4.027 18 N -0.925 5.925 19 Si 1.022 2.978 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.209 4.209 24 C -0.146 4.146 25 C 0.057 3.943 26 O -0.393 6.393 27 C 0.072 3.928 28 C -0.167 4.167 29 H 0.241 0.759 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.410 0.590 33 H 0.424 0.576 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.272 0.728 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 22.415 12.829 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.198 4.198 3 C -0.069 4.069 4 C 0.122 3.878 5 N -0.372 5.372 6 C 0.400 3.600 7 O -0.479 6.479 8 N -0.318 5.318 9 C 0.109 3.891 10 C -0.226 4.226 11 C -0.067 4.067 12 C -0.277 4.277 13 C 0.075 3.925 14 O -0.143 6.143 15 C -0.490 4.490 16 H 0.123 0.877 17 C -0.224 4.224 18 N -0.564 5.564 19 Si 0.841 3.159 20 H -0.180 1.180 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.231 4.231 24 C -0.184 4.184 25 C -0.019 4.019 26 O -0.312 6.312 27 C -0.005 4.005 28 C -0.206 4.206 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.248 0.752 33 H 0.263 0.737 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.878 21.251 13.304 25.237 hybrid contribution -0.702 -0.853 -0.769 1.346 sum -3.580 20.398 12.535 24.208 Atomic orbital electron populations 1.25529 0.96626 0.99959 1.00926 1.23155 0.94735 1.01210 1.00703 1.19269 0.85598 0.98415 1.03572 1.20127 0.92091 0.92740 0.82827 1.45016 1.54780 1.32365 1.05040 1.16145 0.79674 0.83173 0.81030 1.90964 1.46588 1.24566 1.85830 1.42289 1.54377 1.32332 1.02811 1.17035 0.97139 0.89011 0.85880 1.20846 1.10064 1.00436 0.91271 1.21006 0.94881 0.92232 0.98575 1.21309 1.12397 0.95869 0.98169 1.19693 0.93716 0.84294 0.94764 1.83961 1.80525 1.16394 1.33409 1.21869 1.50841 0.91330 0.84949 0.87673 1.26702 0.96135 0.95374 1.04186 1.70225 1.48533 1.05389 1.32213 0.84606 0.79908 0.76991 0.74399 1.17970 1.19789 1.17805 1.20173 1.12381 0.94438 0.96144 1.22504 1.03049 0.95425 0.97389 1.22813 0.80430 0.95873 1.02833 1.87932 1.23060 1.67666 1.52535 1.22433 1.00270 0.88349 0.89421 1.22588 0.94829 0.99069 1.04111 0.74296 0.90823 0.87365 0.75224 0.73708 0.82048 0.82362 0.86039 0.91945 0.88225 0.88721 0.88362 0.86378 0.92167 0.88422 0.93502 0.89085 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.62 19.25 74.32 1.43 -3.19 16 2 C -0.20 -4.90 11.84 31.12 0.37 -4.53 16 3 C -0.03 -0.76 4.49 28.79 0.13 -0.63 16 4 C 0.21 4.04 0.34 3.73 0.00 4.04 16 5 N -0.71 -14.05 3.62 -437.46 -1.58 -15.63 16 6 C 0.70 20.75 7.80 179.06 1.40 22.15 16 7 O -0.60 -24.64 10.12 -4.00 -0.04 -24.69 16 8 N -0.67 -17.82 5.34 -317.24 -1.69 -19.51 16 9 C 0.20 7.34 6.29 38.13 0.24 7.58 16 10 C -0.21 -6.09 9.96 22.42 0.22 -5.86 16 11 C -0.05 -1.60 10.03 22.23 0.22 -1.37 16 12 C -0.26 -11.45 9.17 22.41 0.21 -11.25 16 13 C 0.13 6.78 6.64 22.56 0.15 6.93 16 14 O -0.24 -15.31 9.76 -22.72 -0.22 -15.53 16 15 C -0.41 -25.23 9.49 67.92 0.64 -24.59 16 16 H 0.11 5.78 5.20 -2.91 -0.02 5.76 16 17 C -0.03 -1.61 5.49 84.83 0.47 -1.15 16 18 N -0.93 -59.84 13.67 21.61 0.30 -59.55 16 19 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.21 -10.20 8.64 22.51 0.19 -10.01 16 24 C -0.15 -1.79 4.73 30.75 0.15 -1.64 16 25 C 0.06 0.63 6.67 72.07 0.48 1.11 16 26 O -0.39 -6.88 10.77 -148.98 -1.60 -8.48 16 27 C 0.07 1.37 6.68 72.01 0.48 1.85 16 28 C -0.17 -3.64 4.74 30.68 0.15 -3.49 16 29 H 0.24 3.43 7.80 -4.41 -0.03 3.39 16 30 H 0.07 2.49 6.28 -2.38 -0.01 2.47 16 31 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.41 5.13 7.60 -92.71 -0.70 4.43 16 33 H 0.42 7.03 8.84 -92.71 -0.82 6.21 16 34 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 37 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 38 H 0.10 5.50 6.26 -2.91 -0.02 5.48 16 39 H 0.09 0.98 7.51 -2.39 -0.02 0.96 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.54 7.13 -2.39 -0.02 0.52 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 0.92 7.75 -2.39 -0.02 0.90 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 2.02 6.19 -2.39 -0.01 2.01 16 Total: -1.00 -87.24 377.74 3.62 -83.62 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.49 Total: 37.46 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 6.93 Total: -24.04 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -2.98 Total: -94.69 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.87 Total: -48.70 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -87.24 3.62 -83.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887242387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.430 kcal (2) G-P(sol) polarization free energy of solvation -87.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds