Wall clock time and date at job start Wed Apr 1 2020 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33228 * 126.02119 * 2 1 4 4 C 1.31531 * 109.76381 * 180.02562 * 3 2 1 5 5 O 1.35210 * 125.49257 * 179.97438 * 4 3 2 6 6 N 1.34949 * 109.01562 * 359.76783 * 4 3 2 7 7 H 0.96993 * 126.54364 * 180.26732 * 6 4 3 8 8 C 1.36726 * 126.01868 * 180.02562 * 2 1 3 9 9 C 1.46377 * 126.82374 * 359.95057 * 8 2 1 10 10 O 1.21738 * 120.00025 * 359.97438 * 9 8 2 11 11 N 1.34778 * 119.99584 * 179.97438 * 9 8 2 12 12 C 1.46498 * 119.99598 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47090 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.49185 * 54.93825 * 13 12 11 15 15 C 1.52757 * 109.56603 * 294.97017 * 13 12 11 16 16 N 1.46926 * 109.00733 * 185.55036 * 15 13 12 17 17 C 1.36936 * 120.62895 * 233.58294 * 16 15 13 18 18 H 1.08005 * 119.99839 * 27.20489 * 17 16 15 19 19 C 1.38807 * 120.00116 * 207.19766 * 17 16 15 20 20 N 1.31623 * 120.00040 * 17.81465 * 19 17 16 21 21 Si 1.86802 * 120.00415 * 197.81166 * 19 17 16 22 22 H 1.48497 * 109.47053 * 265.36017 * 21 19 17 23 23 H 1.48505 * 109.46961 * 25.35893 * 21 19 17 24 24 H 1.48502 * 109.47482 * 145.35682 * 21 19 17 25 25 C 1.46919 * 118.73874 * 53.30994 * 16 15 13 26 26 C 1.53196 * 108.77664 * 306.64383 * 25 16 15 27 27 C 1.53033 * 109.31225 * 54.63354 * 26 25 16 28 28 F 1.39901 * 109.46238 * 58.65895 * 27 26 25 29 29 F 1.39901 * 109.46185 * 178.63027 * 27 26 25 30 30 H 1.09002 * 109.47696 * 269.97617 * 1 2 3 31 31 H 1.09004 * 109.47435 * 29.97949 * 1 2 3 32 32 H 1.09003 * 109.47165 * 149.97410 * 1 2 3 33 33 H 0.96699 * 113.99566 * 90.02639 * 5 4 3 34 34 H 0.96998 * 120.00181 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.47058 * 60.00871 * 12 11 9 36 36 H 1.08993 * 109.47669 * 300.00136 * 12 11 9 37 37 H 1.09000 * 109.50937 * 65.66761 * 15 13 12 38 38 H 1.09002 * 109.43525 * 305.38459 * 15 13 12 39 39 H 0.97000 * 119.99840 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58841 * 66.43041 * 25 16 15 41 41 H 1.09002 * 109.58864 * 186.85624 * 25 16 15 42 42 H 1.09000 * 109.49474 * 174.58993 * 26 25 16 43 43 H 1.09000 * 109.49469 * 294.67986 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5531 0.7093 -0.0006 5 8 4.6150 1.5464 -0.0012 6 7 3.6181 -0.6386 0.0042 7 1 4.4242 -1.1779 0.0086 8 6 2.3109 -1.1059 -0.0005 9 6 1.8791 -2.5045 -0.0001 10 8 0.6922 -2.7751 0.0012 11 7 2.7957 -3.4927 -0.0012 12 6 2.3635 -4.8925 -0.0003 13 6 3.5914 -5.8053 -0.0025 14 1 4.2371 -5.5485 0.8374 15 6 4.3620 -5.6230 -1.3088 16 7 5.4603 -6.5978 -1.3564 17 6 6.7478 -6.1878 -1.5788 18 1 7.0543 -5.1921 -1.2939 19 6 7.6590 -7.0519 -2.1702 20 7 7.2321 -8.1085 -2.8289 21 14 9.4912 -6.7154 -2.0315 22 1 9.9493 -5.9674 -3.2297 23 1 9.7554 -5.9082 -0.8132 24 1 10.2256 -8.0029 -1.9410 25 6 5.1518 -8.0200 -1.1549 26 6 4.3731 -8.1749 0.1552 27 6 3.1442 -7.2634 0.1242 28 9 2.3407 -7.6012 -0.9702 29 9 2.4137 -7.4256 1.3063 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 4.9245 1.7897 0.8820 34 1 3.7414 -3.2770 -0.0019 35 1 1.7642 -5.0883 -0.8894 36 1 1.7667 -5.0879 0.8905 37 1 4.7681 -4.6125 -1.3539 38 1 3.6908 -5.7873 -2.1518 39 1 7.8689 -8.7125 -3.2419 40 1 4.5464 -8.3838 -1.9851 41 1 6.0789 -8.5906 -1.0986 42 1 4.0548 -9.2111 0.2689 43 1 5.0119 -7.8960 0.9932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046952201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:37 Heat of formation + Delta-G solvation = -97.927918 kcal Electronic energy + Delta-G solvation = -30952.343860 eV Core-core repulsion = 26284.218123 eV Total energy + Delta-G solvation = -4668.125737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.61391 -46.56307 -42.54558 -39.57919 -37.80811 -37.41852 -35.25210 -33.65162 -32.72102 -31.27966 -30.71604 -30.28470 -27.52156 -25.70419 -25.21974 -23.23388 -22.52595 -21.85272 -21.15850 -20.30521 -19.80237 -19.51138 -18.18605 -17.23217 -16.89028 -16.62827 -16.43847 -16.06062 -15.56154 -15.49999 -15.22830 -14.97402 -14.46367 -14.20153 -13.94481 -13.66375 -13.39647 -13.36195 -13.20977 -12.91848 -12.87626 -12.83558 -12.62400 -12.31165 -12.25466 -11.79573 -11.72317 -11.65456 -11.33355 -10.90296 -10.73477 -10.65309 -10.62617 -10.37585 -10.16800 -10.13360 -10.01802 -9.75809 -9.28352 -8.70571 -8.63900 -7.00499 -6.03101 -3.47404 0.88746 2.06343 2.38891 2.89191 3.10035 3.22497 3.30479 3.31678 3.51388 4.10453 4.27532 4.44586 4.49687 4.56462 4.68125 4.79087 4.88452 5.09827 5.18007 5.25517 5.31225 5.43611 5.52581 5.63156 5.73171 5.79485 5.80216 5.88781 6.05307 6.14079 6.17355 6.20005 6.26172 6.32274 6.33454 6.57235 7.01299 7.13271 7.27213 7.36159 7.51345 7.54698 7.96034 8.16618 8.92871 9.55759 10.10596 11.06079 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003461 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.233543 B = 8089.245461 C =10382.842124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.114 3.886 3 N -0.489 5.489 4 C 0.413 3.587 5 O -0.440 6.440 6 N -0.554 5.554 7 H 0.424 0.576 8 C -0.082 4.082 9 C 0.597 3.403 10 O -0.520 6.520 11 N -0.721 5.721 12 C 0.126 3.874 13 C -0.156 4.156 14 H 0.101 0.899 15 C 0.153 3.847 16 N -0.590 5.590 17 C -0.265 4.265 18 H 0.068 0.932 19 C 0.009 3.991 20 N -0.897 5.897 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.278 1.278 24 H -0.287 1.287 25 C 0.170 3.830 26 C -0.179 4.179 27 C 0.301 3.699 28 F -0.198 7.198 29 F -0.213 7.213 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.397 0.603 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.258 0.742 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 11.050 8.918 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.020 4.020 3 N -0.221 5.221 4 C 0.112 3.888 5 O -0.241 6.241 6 N -0.173 5.173 7 H 0.264 0.736 8 C -0.197 4.197 9 C 0.383 3.617 10 O -0.396 6.396 11 N -0.372 5.372 12 C 0.002 3.998 13 C -0.178 4.178 14 H 0.119 0.881 15 C 0.025 3.975 16 N -0.312 5.312 17 C -0.394 4.394 18 H 0.086 0.914 19 C -0.191 4.191 20 N -0.540 5.540 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.213 1.213 25 C 0.044 3.956 26 C -0.219 4.219 27 C 0.264 3.736 28 F -0.179 7.179 29 F -0.194 7.194 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.265 0.735 34 H 0.231 0.769 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.603 11.527 8.203 16.061 hybrid contribution 2.434 -0.820 0.554 2.627 sum -5.169 10.707 8.757 14.766 Atomic orbital electron populations 1.20357 0.85862 1.04081 1.03351 1.20955 0.96913 0.85813 0.98361 1.70300 0.98576 1.30338 1.22843 1.20184 0.87417 0.78682 1.02514 1.84860 1.43267 1.61518 1.34481 1.43746 1.08884 1.08015 1.56640 0.73597 1.20803 0.83005 0.95210 1.20682 1.16620 0.85915 0.82306 0.76859 1.90852 1.15728 1.82790 1.50271 1.45834 1.09410 1.06488 1.75471 1.21389 0.96233 0.78628 1.03515 1.22908 0.97755 0.92024 1.05077 0.88065 1.20814 0.90509 0.94651 0.91482 1.44073 1.02840 1.01481 1.82765 1.19107 0.85193 1.00339 1.34782 0.91433 1.25066 0.98874 0.98451 0.96729 1.70024 1.33447 1.15873 1.34608 0.86272 0.85010 0.77419 0.77976 1.21271 1.20349 1.21343 1.20853 0.99013 0.86211 0.89562 1.23272 0.94959 0.98468 1.05181 1.20994 0.85240 0.96350 0.70968 1.92974 1.76094 1.93819 1.55015 1.92962 1.80498 1.96812 1.49089 0.90404 0.90798 0.88822 0.73465 0.76868 0.90186 0.90537 0.91972 0.94841 0.93236 0.94877 0.88083 0.90424 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.87 36.00 0.36 -0.48 16 2 C 0.11 1.42 7.14 -82.54 -0.59 0.83 16 3 N -0.49 -6.17 11.22 -10.83 -0.12 -6.29 16 4 C 0.41 4.29 9.43 -89.59 -0.84 3.45 16 5 O -0.44 -3.43 13.62 -17.32 -0.24 -3.66 16 6 N -0.55 -5.17 6.12 -10.90 -0.07 -5.23 16 7 H 0.42 2.82 8.32 -40.82 -0.34 2.48 16 8 C -0.08 -0.97 7.08 -81.97 -0.58 -1.55 16 9 C 0.60 7.88 7.78 -12.99 -0.10 7.77 16 10 O -0.52 -8.22 14.80 5.15 0.08 -8.15 16 11 N -0.72 -8.62 5.33 -61.71 -0.33 -8.95 16 12 C 0.13 1.75 4.83 -4.04 -0.02 1.73 16 13 C -0.16 -2.37 2.02 -90.72 -0.18 -2.55 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 15 C 0.15 2.76 5.38 -3.93 -0.02 2.74 16 16 N -0.59 -13.09 3.00 -172.59 -0.52 -13.61 16 17 C -0.27 -6.49 9.58 -15.06 -0.14 -6.64 16 18 H 0.07 1.58 7.89 -52.48 -0.41 1.17 16 19 C 0.01 0.22 4.90 -17.43 -0.09 0.13 16 20 N -0.90 -24.15 11.20 55.49 0.62 -23.53 16 21 Si 0.90 19.91 29.59 -169.99 -5.03 14.88 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.17 3.67 5.11 -3.71 -0.02 3.65 16 26 C -0.18 -3.11 5.62 -26.61 -0.15 -3.26 16 27 C 0.30 5.04 1.63 -26.69 -0.04 5.00 16 28 F -0.20 -3.63 15.73 2.25 0.04 -3.59 16 29 F -0.21 -3.47 16.40 2.25 0.04 -3.43 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.08 6.47 -51.93 -0.34 0.75 16 33 H 0.41 0.93 9.06 45.56 0.41 1.34 16 34 H 0.40 3.94 6.94 -40.82 -0.28 3.66 16 35 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 36 H 0.08 1.08 7.63 -51.93 -0.40 0.69 16 37 H 0.06 1.03 7.13 -51.93 -0.37 0.66 16 38 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.03 0.78 7.92 -51.93 -0.41 0.36 16 41 H 0.10 2.43 6.03 -51.93 -0.31 2.12 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -31.73 360.99 -7.04 -38.77 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.52 Total: 6.53 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -2.42 Total: 10.81 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.41 Total: -57.60 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.16 Total: -11.81 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.02 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.73 -7.04 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046952201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.160 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds