Wall clock time and date at job start Wed Apr 1 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.51477 * 2 1 4 4 N 1.46499 * 109.47091 * 304.99736 * 3 2 1 5 5 C 1.34772 * 119.99963 * 180.02562 * 4 3 2 6 6 O 1.21629 * 120.00310 * 0.02562 * 5 4 3 7 7 C 1.47166 * 119.99648 * 179.97438 * 5 4 3 8 8 C 1.38409 * 126.88393 * 180.02562 * 7 5 4 9 9 C 1.39668 * 105.36329 * 179.73788 * 8 7 5 10 10 N 1.30866 * 107.85682 * 0.25815 * 9 8 7 11 11 N 1.28443 * 110.93369 * 0.02562 * 10 9 8 12 12 C 1.46498 * 125.19331 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.47141 * 119.97672 * 12 11 10 14 14 F 1.39905 * 109.46806 * 239.97319 * 12 11 10 15 15 C 1.53297 * 109.50815 * 120.09669 * 2 1 3 16 16 N 1.47157 * 108.38411 * 67.67502 * 15 2 1 17 17 C 1.36937 * 120.98129 * 230.51096 * 16 15 2 18 18 H 1.08001 * 119.99672 * 153.31832 * 17 16 15 19 19 C 1.38811 * 120.00047 * 333.32352 * 17 16 15 20 20 N 1.31619 * 120.00074 * 343.55304 * 19 17 16 21 21 Si 1.86799 * 120.00003 * 163.55237 * 19 17 16 22 22 H 1.48506 * 109.46703 * 59.99913 * 21 19 17 23 23 H 1.48499 * 109.47328 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47350 * 300.00325 * 21 19 17 25 25 C 1.47147 * 118.03387 * 50.53181 * 16 15 2 26 26 C 1.53297 * 108.38695 * 309.46546 * 25 16 15 27 27 O 1.42955 * 109.51528 * 239.89302 * 2 1 3 28 28 H 1.09002 * 109.46756 * 60.00081 * 1 2 3 29 29 H 1.08999 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47079 * 300.00562 * 1 2 3 31 31 H 1.08994 * 109.47083 * 184.99273 * 3 2 1 32 32 H 1.09007 * 109.47142 * 64.99615 * 3 2 1 33 33 H 0.97003 * 119.99504 * 0.02562 * 4 3 2 34 34 H 1.08005 * 127.31613 * 359.97438 * 8 7 5 35 35 H 1.07997 * 126.07527 * 180.26116 * 9 8 7 36 36 H 1.08998 * 109.47268 * 359.97438 * 12 11 10 37 37 H 1.08997 * 109.68221 * 187.39406 * 15 2 1 38 38 H 1.09001 * 109.68742 * 307.91517 * 15 2 1 39 39 H 0.97003 * 120.00095 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.68413 * 69.19428 * 25 16 15 41 41 H 1.09004 * 109.68369 * 189.74265 * 25 16 15 42 42 H 1.09003 * 109.50940 * 172.22646 * 26 25 16 43 43 H 1.08991 * 109.51095 * 292.32656 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4576 2.1670 -1.1315 5 6 1.7675 3.4630 -1.3335 6 8 2.5320 4.0306 -0.5768 7 6 1.1817 4.1909 -2.4704 8 6 1.3997 5.5148 -2.8104 9 6 0.6333 5.7333 -3.9574 10 7 0.0175 4.6156 -4.2476 11 7 0.3109 3.6966 -3.3996 12 6 -0.2045 2.3255 -3.4284 13 9 0.8626 1.4287 -3.5468 14 9 -0.9034 2.0652 -2.2447 15 6 2.0419 -0.7246 1.2502 16 7 1.6969 -2.1504 1.1341 17 6 1.0625 -2.8075 2.1544 18 1 0.4441 -3.6668 1.9412 19 6 1.2143 -2.3689 3.4627 20 7 2.1962 -1.5490 3.7722 21 14 0.0248 -2.9424 4.7839 22 1 0.0819 -4.4224 4.8927 23 1 0.4006 -2.3350 6.0858 24 1 -1.3541 -2.5255 4.4234 25 6 2.0542 -2.8494 -0.1105 26 6 1.5416 -2.0212 -1.2943 27 8 2.0076 -0.6759 -1.1656 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.1274 1.4426 -0.0894 32 1 1.7531 1.9297 0.9314 33 1 0.8481 1.7142 -1.7352 34 1 2.0315 6.2264 -2.2997 35 1 0.5616 6.6600 -4.5073 36 1 -0.8748 2.2071 -4.2797 37 1 3.1239 -0.6134 1.3217 38 1 1.5701 -0.3033 2.1378 39 1 2.3020 -1.2422 4.6864 40 1 3.1374 -2.9521 -0.1759 41 1 1.5900 -3.8355 -0.1240 42 1 1.9141 -2.4481 -2.2256 43 1 0.4518 -2.0301 -1.3001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107971008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:26 Heat of formation + Delta-G solvation = -63.739026 kcal Electronic energy + Delta-G solvation = -32483.711229 eV Core-core repulsion = 27817.068033 eV Total energy + Delta-G solvation = -4666.643195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.06030 -48.85963 -43.67867 -41.15826 -40.16696 -36.66321 -36.07969 -34.16423 -33.35639 -33.21042 -32.00876 -29.62479 -28.27036 -27.69752 -27.26988 -25.04362 -24.31964 -23.15424 -22.75614 -21.82763 -20.66515 -20.09083 -19.27677 -18.99696 -18.65316 -17.80473 -17.53931 -17.13145 -16.95696 -16.78132 -16.22158 -15.98888 -15.73608 -15.60075 -15.59159 -15.45666 -15.24400 -15.17118 -14.95027 -14.62995 -14.58185 -14.20124 -14.04405 -13.54242 -13.32299 -13.19034 -12.96330 -12.77161 -12.56894 -12.46587 -12.28421 -12.19368 -12.00316 -11.87806 -11.49480 -11.15141 -10.79106 -10.76633 -10.55727 -10.51977 -10.23881 -8.72885 -7.90276 -5.37731 -0.18879 0.52106 1.39892 1.46107 1.48378 1.55159 1.76711 1.92371 2.17098 2.47434 2.72396 2.91096 3.19748 3.20079 3.25760 3.44872 3.78017 3.82464 3.92395 4.00120 4.03848 4.29746 4.36880 4.41747 4.47332 4.53281 4.66753 4.69907 4.75074 4.88189 4.97122 5.01790 5.06930 5.11968 5.16368 5.28360 5.39718 5.49676 5.60522 6.13465 6.27404 6.33215 6.62382 6.79606 7.05810 7.74736 8.29424 9.15497 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.003349 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.681875 B = 8359.608393 C = 8794.531245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 C 0.144 3.856 4 N -0.712 5.712 5 C 0.576 3.424 6 O -0.557 6.557 7 C -0.057 4.057 8 C -0.136 4.136 9 C 0.036 3.964 10 N -0.263 5.263 11 N -0.349 5.349 12 C 0.470 3.530 13 F -0.170 7.170 14 F -0.174 7.174 15 C 0.171 3.829 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.074 0.926 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.103 3.897 26 C 0.050 3.950 27 O -0.386 6.386 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.401 0.599 34 H 0.184 0.816 35 H 0.243 0.757 36 H 0.233 0.767 37 H -0.004 1.004 38 H 0.068 0.932 39 H 0.251 0.749 40 H 0.014 0.986 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 11.366 -19.977 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 C 0.019 3.981 4 N -0.373 5.373 5 C 0.362 3.638 6 O -0.434 6.434 7 C -0.181 4.181 8 C -0.165 4.165 9 C -0.144 4.144 10 N -0.092 5.092 11 N -0.148 5.148 12 C 0.337 3.663 13 F -0.152 7.152 14 F -0.156 7.156 15 C 0.044 3.956 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.092 0.908 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.201 1.201 25 C -0.022 4.022 26 C -0.027 4.027 27 O -0.306 6.306 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.202 0.798 35 H 0.259 0.741 36 H 0.249 0.751 37 H 0.014 0.986 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.899 11.105 -20.124 24.304 hybrid contribution 0.285 -0.589 2.079 2.180 sum -7.614 10.515 -18.045 22.230 Atomic orbital electron populations 1.22195 0.94276 1.03068 1.01915 1.22203 0.94495 0.90306 0.87891 1.21188 0.98286 0.89449 0.89141 1.46584 1.48768 1.10672 1.31255 1.17370 0.81063 0.81758 0.83654 1.90815 1.36924 1.68587 1.47123 1.21890 1.02289 0.97405 0.96467 1.22751 1.02287 0.92980 0.98468 1.24555 0.95666 0.97586 0.96621 1.73121 1.23026 0.98243 1.14771 1.47023 1.35399 1.11251 1.21139 1.22260 0.82544 0.72108 0.89356 1.93119 1.59633 1.67183 1.95234 1.93059 1.77925 1.92814 1.51779 1.21010 0.95584 0.84451 0.94562 1.44225 1.68680 1.05369 1.14764 1.19474 1.21211 1.12467 0.85994 0.90788 1.25811 0.98716 1.00665 0.99225 1.70170 1.30974 1.38401 1.18566 0.85345 0.79041 0.78035 0.78056 1.20056 1.22310 1.20135 1.21808 0.97129 0.96313 0.86972 1.23146 0.99086 0.81694 0.98761 1.87845 1.73256 1.26602 1.42853 0.91279 0.91441 0.92512 0.91692 0.90260 0.75189 0.79839 0.74117 0.75095 0.98579 0.91342 0.94021 0.96809 0.90733 0.86377 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 7.86 71.98 0.57 -4.96 16 2 C 0.09 3.59 0.78 -10.69 -0.01 3.59 16 3 C 0.14 5.40 4.85 86.38 0.42 5.82 16 4 N -0.71 -23.20 4.62 -466.63 -2.16 -25.36 16 5 C 0.58 18.99 7.80 86.59 0.68 19.67 16 6 O -0.56 -21.72 16.92 -4.12 -0.07 -21.79 16 7 C -0.06 -1.46 6.85 40.79 0.28 -1.18 16 8 C -0.14 -2.63 10.85 22.66 0.25 -2.38 16 9 C 0.04 0.49 12.03 85.18 1.02 1.51 16 10 N -0.26 -4.51 11.90 -57.14 -0.68 -5.19 16 11 N -0.35 -7.10 3.61 -351.29 -1.27 -8.37 16 12 C 0.47 7.67 5.64 127.77 0.72 8.39 16 13 F -0.17 -3.60 15.26 44.97 0.69 -2.91 16 14 F -0.17 -3.52 13.54 44.97 0.61 -2.91 16 15 C 0.17 8.35 4.11 86.35 0.35 8.70 16 16 N -0.61 -29.97 2.57 -697.52 -1.79 -31.76 16 17 C -0.26 -13.98 9.65 84.03 0.81 -13.17 16 18 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 19 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 20 N -0.94 -55.11 11.14 21.65 0.24 -54.87 16 21 Si 0.97 44.13 29.58 68.60 2.03 46.16 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 C 0.10 4.17 6.74 86.36 0.58 4.76 16 26 C 0.05 1.65 6.60 72.08 0.48 2.13 16 27 O -0.39 -14.34 10.17 -148.98 -1.52 -15.85 16 28 H 0.07 2.05 4.72 -2.39 -0.01 2.04 16 29 H 0.07 2.49 6.12 -2.39 -0.01 2.48 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 33 H 0.40 11.62 1.31 -92.71 -0.12 11.50 16 34 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.24 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.23 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.07 3.72 6.16 -2.39 -0.01 3.71 16 39 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.07 2.79 7.96 -2.38 -0.02 2.77 16 42 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.06 1.85 6.26 -2.39 -0.01 1.83 16 Total: -1.00 -73.87 351.17 3.60 -70.27 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.95 Total: 21.94 kcal Atomic # 6 Polarization: 24.07 SS G_CDS: 6.57 Total: 30.63 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.66 Total: -125.55 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.59 Total: -37.64 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.30 Total: -5.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.87 3.60 -70.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107971008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.535 kcal (2) G-P(sol) polarization free energy of solvation -73.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds