Wall clock time and date at job start Wed Apr 1 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.47436 * 119.99979 * 180.02562 * 5 4 3 8 8 C 1.41291 * 126.41186 * 0.02562 * 7 5 4 9 9 N 1.30454 * 108.01829 * 179.97438 * 8 7 5 10 10 N 1.39938 * 108.89869 * 0.02562 * 9 8 7 11 11 C 1.46493 * 125.75113 * 179.97438 * 10 9 8 12 12 F 1.39896 * 109.47441 * 29.97786 * 11 10 9 13 13 F 1.39901 * 109.46815 * 149.97647 * 11 10 9 14 14 C 1.34262 * 108.48777 * 359.74849 * 10 9 8 15 15 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 16 16 N 1.47166 * 108.41716 * 67.64184 * 15 2 1 17 17 C 1.36933 * 120.99120 * 230.54983 * 16 15 2 18 18 H 1.08000 * 120.00180 * 153.70650 * 17 16 15 19 19 C 1.38813 * 120.00094 * 333.70170 * 17 16 15 20 20 N 1.31620 * 119.99900 * 160.02568 * 19 17 16 21 21 Si 1.86798 * 119.99867 * 340.02586 * 19 17 16 22 22 H 1.48500 * 109.46937 * 91.85831 * 21 19 17 23 23 H 1.48502 * 109.47208 * 211.85857 * 21 19 17 24 24 H 1.48499 * 109.47296 * 331.85455 * 21 19 17 25 25 C 1.47155 * 118.02599 * 50.46688 * 16 15 2 26 26 C 1.53300 * 108.41547 * 309.53664 * 25 16 15 27 27 O 1.42958 * 109.22465 * 52.28134 * 26 25 16 28 28 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 29 29 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 30 30 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 31 31 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 32 32 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 33 33 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 34 34 H 1.07995 * 125.99228 * 0.02562 * 8 7 5 35 35 H 1.08998 * 109.47269 * 269.97421 * 11 10 9 36 36 H 1.07998 * 126.28657 * 180.23979 * 14 10 9 37 37 H 1.09003 * 109.68354 * 187.34399 * 15 2 1 38 38 H 1.09005 * 109.68141 * 307.89260 * 15 2 1 39 39 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.68037 * 189.78791 * 25 16 15 41 41 H 1.09003 * 109.67969 * 69.27666 * 25 16 15 42 42 H 1.09000 * 109.50966 * 172.20794 * 26 25 16 43 43 H 1.09003 * 109.50501 * 292.30491 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5343 4.0299 -0.5767 7 6 1.1868 4.1915 -2.4749 8 6 0.2908 3.6687 -3.4342 9 7 0.0032 4.6206 -4.2786 10 7 0.6916 5.7805 -3.9058 11 6 0.6358 7.0694 -4.5999 12 9 -0.6151 7.2176 -5.2085 13 9 0.8317 8.1039 -3.6787 14 6 1.4079 5.5142 -2.8019 15 6 2.0420 -0.7252 1.2496 16 7 1.6967 -2.1511 1.1339 17 6 1.0620 -2.8079 2.1542 18 1 0.4485 -3.6710 1.9417 19 6 1.2071 -2.3645 3.4615 20 7 0.3278 -2.7139 4.3764 21 14 2.6505 -1.2719 3.9223 22 1 2.2554 0.1532 3.7873 23 1 3.0489 -1.5442 5.3267 24 1 3.7946 -1.5561 3.0193 25 6 2.0520 -2.8498 -0.1115 26 6 1.5395 -2.0209 -1.2949 27 8 2.0074 -0.6763 -1.1656 28 1 -0.3634 -1.0277 0.0023 29 1 -0.3634 0.5158 0.8889 30 1 -0.3634 0.5119 -0.8910 31 1 1.7525 1.9302 0.9304 32 1 3.1285 1.4414 -0.0873 33 1 0.8533 1.7132 -1.7382 34 1 -0.0899 2.6585 -3.4629 35 1 1.4163 7.1069 -5.3598 36 1 2.0424 6.2069 -2.2691 37 1 3.1241 -0.6148 1.3207 38 1 1.5704 -0.3041 2.1376 39 1 0.4294 -2.4043 5.2901 40 1 1.5871 -3.8355 -0.1249 41 1 3.1350 -2.9538 -0.1778 42 1 1.9112 -2.4478 -2.2264 43 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108304288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:39 Heat of formation + Delta-G solvation = -54.898240 kcal Electronic energy + Delta-G solvation = -30437.265609 eV Core-core repulsion = 25771.005779 eV Total energy + Delta-G solvation = -4666.259830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.92440 -48.03623 -41.79543 -39.79015 -38.75140 -35.14440 -34.55787 -33.41898 -31.94068 -31.60388 -30.75193 -28.46097 -27.32408 -26.42543 -25.54477 -23.64125 -23.00995 -21.87728 -21.06973 -20.38859 -19.31502 -19.01175 -18.70945 -17.98546 -17.27323 -16.85268 -16.20271 -15.78329 -15.53654 -15.38389 -15.23663 -14.80569 -14.69700 -14.54014 -14.37303 -14.29841 -14.03736 -13.97967 -13.85671 -13.36477 -13.26390 -12.86874 -12.70550 -12.37384 -12.31932 -11.88813 -11.66101 -11.55143 -11.41648 -11.09217 -10.87591 -10.40470 -10.37330 -10.22181 -10.02431 -9.74746 -9.53939 -9.42415 -9.36535 -8.93156 -8.60374 -7.05563 -6.02514 -3.39838 0.91278 1.21837 1.74774 2.86840 3.11332 3.26990 3.30596 3.44848 3.45772 3.47406 3.81906 4.01767 4.13542 4.34626 4.45530 4.72131 4.72967 4.86104 5.12349 5.20677 5.27340 5.31446 5.38519 5.71983 5.73818 5.79632 5.82084 5.90646 5.96615 5.97647 6.04704 6.21042 6.24797 6.43267 6.43787 6.50330 6.59208 6.73515 6.88930 7.54286 7.60369 7.80923 8.22985 8.23649 8.80825 9.61817 9.97888 11.12966 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.002390 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.986624 B =11714.883320 C =12314.658511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 C 0.137 3.863 4 N -0.711 5.711 5 C 0.591 3.409 6 O -0.549 6.549 7 C -0.271 4.271 8 C 0.098 3.902 9 N -0.275 5.275 10 N -0.433 5.433 11 C 0.512 3.488 12 F -0.170 7.170 13 F -0.178 7.178 14 C 0.141 3.859 15 C 0.108 3.892 16 N -0.603 5.603 17 C -0.261 4.261 18 H 0.088 0.912 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.112 3.888 26 C 0.044 3.956 27 O -0.379 6.379 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.402 0.598 34 H 0.200 0.800 35 H 0.161 0.839 36 H 0.197 0.803 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.264 0.736 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.086 0.914 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 16.582 -19.907 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C 0.013 3.987 4 N -0.362 5.362 5 C 0.377 3.623 6 O -0.428 6.428 7 C -0.286 4.286 8 C -0.092 4.092 9 N -0.092 5.092 10 N -0.222 5.222 11 C 0.379 3.621 12 F -0.151 7.151 13 F -0.159 7.159 14 C -0.006 4.006 15 C -0.019 4.019 16 N -0.328 5.328 17 C -0.389 4.389 18 H 0.106 0.894 19 C -0.174 4.174 20 N -0.548 5.548 21 Si 0.708 3.292 22 H -0.213 1.213 23 H -0.229 1.229 24 H -0.194 1.194 25 C -0.014 4.014 26 C -0.034 4.034 27 O -0.299 6.299 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.238 0.762 34 H 0.216 0.784 35 H 0.177 0.823 36 H 0.213 0.787 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.104 0.896 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.841 17.538 -20.417 26.928 hybrid contribution 0.637 0.085 1.144 1.312 sum 1.478 17.623 -19.273 26.157 Atomic orbital electron populations 1.22230 0.94840 1.03948 1.01218 1.22247 0.94187 0.90410 0.88430 1.21385 0.98972 0.89240 0.89089 1.45715 1.49084 1.10582 1.30818 1.17123 0.80523 0.81447 0.83209 1.90794 1.36641 1.68110 1.47236 1.20441 1.10144 0.94834 1.03161 1.24342 0.94581 0.99215 0.91099 1.77335 1.17201 0.90939 1.23753 1.49796 1.38050 1.10483 1.23882 1.21349 0.85146 0.72310 0.83345 1.93144 1.44896 1.94700 1.82358 1.93157 1.95171 1.58094 1.69524 1.22971 0.93973 0.96915 0.86707 1.21922 0.98147 0.85902 0.95897 1.44301 1.69262 1.03814 1.15418 1.18877 1.22272 1.13084 0.84665 0.89413 1.25246 0.97904 0.98646 0.95586 1.69816 1.34237 1.47701 1.03056 0.87055 0.85188 0.79913 0.77036 1.21317 1.22933 1.19437 1.21631 0.97825 0.95665 0.86232 1.23085 0.98832 0.82708 0.98795 1.87852 1.72829 1.26042 1.43155 0.90212 0.91521 0.93415 0.89854 0.90540 0.76228 0.78367 0.82289 0.78660 0.94579 0.89903 0.92624 0.91039 0.95131 0.89634 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 7.86 37.15 0.29 -2.28 16 2 C 0.09 1.48 0.78 -90.47 -0.07 1.41 16 3 C 0.14 2.11 4.85 -4.04 -0.02 2.09 16 4 N -0.71 -9.10 5.19 -61.38 -0.32 -9.42 16 5 C 0.59 7.98 7.81 -12.51 -0.10 7.88 16 6 O -0.55 -9.30 16.90 5.28 0.09 -9.21 16 7 C -0.27 -2.91 6.13 -105.07 -0.64 -3.55 16 8 C 0.10 0.90 11.50 -16.98 -0.20 0.70 16 9 N -0.27 -2.79 12.32 30.86 0.38 -2.41 16 10 N -0.43 -3.70 3.94 -66.10 -0.26 -3.96 16 11 C 0.51 2.83 6.62 59.84 0.40 3.23 16 12 F -0.17 -1.32 17.35 2.25 0.04 -1.28 16 13 F -0.18 -1.11 16.99 2.25 0.04 -1.07 16 14 C 0.14 1.29 10.84 -16.56 -0.18 1.11 16 15 C 0.11 2.26 3.05 -3.53 -0.01 2.25 16 16 N -0.60 -13.62 2.35 -171.81 -0.40 -14.02 16 17 C -0.26 -6.96 10.10 -15.06 -0.15 -7.11 16 18 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.03 0.72 5.26 -17.43 -0.09 0.62 16 20 N -0.91 -26.99 13.97 55.49 0.78 -26.22 16 21 Si 0.88 21.90 24.29 -169.99 -4.13 17.77 16 22 H -0.29 -6.82 6.58 56.52 0.37 -6.45 16 23 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 24 H -0.27 -6.66 6.55 56.52 0.37 -6.29 16 25 C 0.11 2.08 6.73 -3.53 -0.02 2.06 16 26 C 0.04 0.66 6.60 37.31 0.25 0.91 16 27 O -0.38 -6.16 10.17 -35.23 -0.36 -6.52 16 28 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.59 6.59 -51.93 -0.34 0.25 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.40 4.29 5.96 -40.82 -0.24 4.04 16 34 H 0.20 1.24 7.50 -52.49 -0.39 0.84 16 35 H 0.16 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.04 0.78 6.86 -51.93 -0.36 0.43 16 38 H 0.08 1.89 4.60 -51.93 -0.24 1.65 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.81 6.26 -51.93 -0.32 0.48 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -34.37 356.97 -4.53 -38.90 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.21 Total: 2.74 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.55 Total: 9.32 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.17 Total: -56.03 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.27 Total: -15.73 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.37 -4.53 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108304288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.003 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds