Wall clock time and date at job start Wed Apr 1 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.47436 * 119.99979 * 180.02562 * 5 4 3 8 8 C 1.41291 * 126.41186 * 0.02562 * 7 5 4 9 9 N 1.30454 * 108.01829 * 179.97438 * 8 7 5 10 10 N 1.39938 * 108.89869 * 0.02562 * 9 8 7 11 11 C 1.46493 * 125.75113 * 179.97438 * 10 9 8 12 12 F 1.39896 * 109.47441 * 29.97786 * 11 10 9 13 13 F 1.39901 * 109.46815 * 149.97647 * 11 10 9 14 14 C 1.34262 * 108.48777 * 359.74849 * 10 9 8 15 15 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 16 16 N 1.47166 * 108.41716 * 67.64184 * 15 2 1 17 17 C 1.36933 * 120.99120 * 230.54983 * 16 15 2 18 18 H 1.08000 * 120.00180 * 153.70650 * 17 16 15 19 19 C 1.38813 * 120.00094 * 333.70170 * 17 16 15 20 20 N 1.31620 * 119.99900 * 160.02568 * 19 17 16 21 21 Si 1.86798 * 119.99867 * 340.02586 * 19 17 16 22 22 H 1.48500 * 109.46937 * 91.85831 * 21 19 17 23 23 H 1.48502 * 109.47208 * 211.85857 * 21 19 17 24 24 H 1.48499 * 109.47296 * 331.85455 * 21 19 17 25 25 C 1.47155 * 118.02599 * 50.46688 * 16 15 2 26 26 C 1.53300 * 108.41547 * 309.53664 * 25 16 15 27 27 O 1.42958 * 109.22465 * 52.28134 * 26 25 16 28 28 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 29 29 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 30 30 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 31 31 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 32 32 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 33 33 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 34 34 H 1.07995 * 125.99228 * 0.02562 * 8 7 5 35 35 H 1.08998 * 109.47269 * 269.97421 * 11 10 9 36 36 H 1.07998 * 126.28657 * 180.23979 * 14 10 9 37 37 H 1.09003 * 109.68354 * 187.34399 * 15 2 1 38 38 H 1.09005 * 109.68141 * 307.89260 * 15 2 1 39 39 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.68037 * 189.78791 * 25 16 15 41 41 H 1.09003 * 109.67969 * 69.27666 * 25 16 15 42 42 H 1.09000 * 109.50966 * 172.20794 * 26 25 16 43 43 H 1.09003 * 109.50501 * 292.30491 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5343 4.0299 -0.5767 7 6 1.1868 4.1915 -2.4749 8 6 0.2908 3.6687 -3.4342 9 7 0.0032 4.6206 -4.2786 10 7 0.6916 5.7805 -3.9058 11 6 0.6358 7.0694 -4.5999 12 9 -0.6151 7.2176 -5.2085 13 9 0.8317 8.1039 -3.6787 14 6 1.4079 5.5142 -2.8019 15 6 2.0420 -0.7252 1.2496 16 7 1.6967 -2.1511 1.1339 17 6 1.0620 -2.8079 2.1542 18 1 0.4485 -3.6710 1.9417 19 6 1.2071 -2.3645 3.4615 20 7 0.3278 -2.7139 4.3764 21 14 2.6505 -1.2719 3.9223 22 1 2.2554 0.1532 3.7873 23 1 3.0489 -1.5442 5.3267 24 1 3.7946 -1.5561 3.0193 25 6 2.0520 -2.8498 -0.1115 26 6 1.5395 -2.0209 -1.2949 27 8 2.0074 -0.6763 -1.1656 28 1 -0.3634 -1.0277 0.0023 29 1 -0.3634 0.5158 0.8889 30 1 -0.3634 0.5119 -0.8910 31 1 1.7525 1.9302 0.9304 32 1 3.1285 1.4414 -0.0873 33 1 0.8533 1.7132 -1.7382 34 1 -0.0899 2.6585 -3.4629 35 1 1.4163 7.1069 -5.3598 36 1 2.0424 6.2069 -2.2691 37 1 3.1241 -0.6148 1.3207 38 1 1.5704 -0.3041 2.1376 39 1 0.4294 -2.4043 5.2901 40 1 1.5871 -3.8355 -0.1249 41 1 3.1350 -2.9538 -0.1778 42 1 1.9112 -2.4478 -2.2264 43 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108304288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:38 Heat of formation + Delta-G solvation = -81.156591 kcal Electronic energy + Delta-G solvation = -30438.404256 eV Core-core repulsion = 25771.005779 eV Total energy + Delta-G solvation = -4667.398478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.38912 -48.51718 -42.50651 -41.08682 -39.93829 -36.66119 -35.98027 -34.13436 -33.62079 -33.12617 -31.53422 -29.93880 -28.30824 -27.81972 -26.65547 -25.28453 -23.96424 -22.75279 -22.31809 -21.31452 -20.62247 -19.89562 -19.13439 -19.02194 -18.54307 -17.82115 -17.65239 -17.01257 -16.87810 -16.30009 -16.19188 -16.03788 -15.74313 -15.59576 -15.49730 -15.33508 -15.26250 -14.87520 -14.79878 -14.56524 -14.23562 -14.02217 -13.93940 -13.85082 -13.49530 -13.27298 -13.05551 -13.00669 -12.67141 -12.41462 -12.33738 -12.19456 -11.97835 -11.60745 -11.25363 -11.06065 -11.02047 -10.99394 -10.46835 -10.28228 -9.90304 -8.92883 -8.18769 -5.50647 0.20803 0.66624 1.00010 1.26450 1.39451 1.45954 2.12933 2.36000 2.37768 2.52967 2.70152 2.84749 3.01757 3.24814 3.49314 3.54928 3.70556 3.82272 3.87927 3.92703 3.96543 4.20069 4.33461 4.44578 4.47381 4.51694 4.56787 4.65210 4.69172 4.75524 4.86069 4.92958 5.09143 5.15889 5.17621 5.30675 5.36715 5.40154 5.80168 6.09978 6.21397 6.27554 6.56825 6.83503 7.22739 7.56006 7.97176 9.00532 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.002390 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.986624 B =11714.883320 C =12314.658511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 C 0.144 3.856 4 N -0.701 5.701 5 C 0.593 3.407 6 O -0.589 6.589 7 C -0.294 4.294 8 C 0.106 3.894 9 N -0.297 5.297 10 N -0.432 5.432 11 C 0.506 3.494 12 F -0.184 7.184 13 F -0.183 7.183 14 C 0.151 3.849 15 C 0.101 3.899 16 N -0.616 5.616 17 C -0.240 4.240 18 H 0.062 0.938 19 C -0.029 4.029 20 N -0.952 5.952 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.311 1.311 24 H -0.266 1.266 25 C 0.104 3.896 26 C 0.050 3.950 27 O -0.375 6.375 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.414 0.586 34 H 0.225 0.775 35 H 0.211 0.789 36 H 0.212 0.788 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.125 0.875 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 18.038 -22.908 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.061 3.939 3 C 0.019 3.981 4 N -0.352 5.352 5 C 0.382 3.618 6 O -0.471 6.471 7 C -0.308 4.308 8 C -0.084 4.084 9 N -0.115 5.115 10 N -0.221 5.221 11 C 0.374 3.626 12 F -0.165 7.165 13 F -0.164 7.164 14 C 0.003 3.997 15 C -0.025 4.025 16 N -0.341 5.341 17 C -0.370 4.370 18 H 0.080 0.920 19 C -0.224 4.224 20 N -0.598 5.598 21 Si 0.761 3.239 22 H -0.199 1.199 23 H -0.240 1.240 24 H -0.191 1.191 25 C -0.021 4.021 26 C -0.027 4.027 27 O -0.294 6.294 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.241 0.759 35 H 0.227 0.773 36 H 0.228 0.772 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.143 0.857 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.307 19.011 -23.507 30.260 hybrid contribution 0.475 -0.391 1.975 2.069 sum 1.781 18.620 -21.532 28.522 Atomic orbital electron populations 1.22179 0.93836 1.03097 1.02632 1.21951 0.94737 0.90597 0.86630 1.21123 0.98591 0.88529 0.89844 1.45519 1.49045 1.10466 1.30213 1.17435 0.79763 0.81274 0.83332 1.90773 1.38551 1.68884 1.48856 1.20247 1.11794 0.95555 1.03205 1.24722 0.93571 1.00146 0.89975 1.77307 1.18074 0.91615 1.24518 1.50078 1.37256 1.11102 1.23617 1.22221 0.85639 0.70968 0.83724 1.93115 1.46270 1.94668 1.82490 1.93149 1.95120 1.58195 1.69967 1.23241 0.93359 0.96720 0.86412 1.21936 0.97647 0.85402 0.97487 1.44408 1.69198 1.04807 1.15728 1.18832 1.20707 1.11758 0.85666 0.92009 1.25765 0.99916 1.00870 0.95837 1.69927 1.36124 1.50434 1.03344 0.86175 0.82502 0.79297 0.75924 1.19931 1.24034 1.19094 1.21887 0.98140 0.96357 0.85713 1.23147 0.99315 0.81606 0.98618 1.87876 1.72918 1.26410 1.42195 0.92112 0.92583 0.89605 0.90671 0.91304 0.74764 0.75869 0.77284 0.77183 0.95181 0.92036 0.92946 0.90833 0.94871 0.85741 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 7.86 71.98 0.57 -4.12 16 2 C 0.10 3.24 0.78 -10.70 -0.01 3.23 16 3 C 0.14 4.21 4.85 86.38 0.42 4.63 16 4 N -0.70 -16.34 5.19 -466.38 -2.42 -18.75 16 5 C 0.59 15.03 7.81 86.67 0.68 15.71 16 6 O -0.59 -19.43 16.90 -4.04 -0.07 -19.50 16 7 C -0.29 -5.65 6.13 -20.15 -0.12 -5.77 16 8 C 0.11 1.65 11.50 85.65 0.99 2.63 16 9 N -0.30 -5.27 12.32 -56.27 -0.69 -5.97 16 10 N -0.43 -6.28 3.94 -363.05 -1.43 -7.72 16 11 C 0.51 4.22 6.62 127.77 0.85 5.07 16 12 F -0.18 -2.49 17.35 44.97 0.78 -1.71 16 13 F -0.18 -1.87 16.99 44.97 0.76 -1.11 16 14 C 0.15 2.42 10.84 84.27 0.91 3.33 16 15 C 0.10 4.17 3.05 86.35 0.26 4.44 16 16 N -0.62 -27.52 2.35 -697.49 -1.64 -29.16 16 17 C -0.24 -13.02 10.10 84.03 0.85 -12.17 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 19 C -0.03 -1.64 5.26 84.86 0.45 -1.19 16 20 N -0.95 -58.56 13.97 21.65 0.30 -58.26 16 21 Si 0.93 46.19 24.29 68.60 1.67 47.86 16 22 H -0.27 -12.78 6.58 99.48 0.65 -12.12 16 23 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 24 H -0.27 -12.86 6.55 99.48 0.65 -12.21 16 25 C 0.10 3.67 6.73 86.35 0.58 4.25 16 26 C 0.05 1.37 6.60 72.08 0.48 1.84 16 27 O -0.37 -10.99 10.17 -148.98 -1.52 -12.50 16 28 H 0.06 2.03 6.12 -2.38 -0.01 2.02 16 29 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.09 1.83 6.59 -2.39 -0.02 1.81 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.41 7.43 5.96 -92.71 -0.55 6.88 16 34 H 0.23 1.97 7.50 -2.91 -0.02 1.95 16 35 H 0.21 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 38 H 0.06 2.80 4.60 -2.38 -0.01 2.79 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.06 1.60 6.26 -2.39 -0.01 1.59 16 Total: -1.00 -76.38 356.97 3.05 -73.33 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.41 Total: 11.61 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 6.89 Total: 21.88 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -5.88 Total: -119.85 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.58 Total: -32.00 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 1.54 Total: -2.82 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -76.38 3.05 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108304288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.826 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds