Wall clock time and date at job start Wed Apr 1 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.51275 * 2 1 4 4 N 1.46495 * 109.47244 * 60.00027 * 3 2 1 5 5 C 1.34774 * 120.00102 * 180.02562 * 4 3 2 6 6 O 1.21662 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.46978 * 120.00377 * 179.97438 * 5 4 3 8 8 C 1.35809 * 125.13383 * 179.71893 * 7 5 4 9 9 C 1.46244 * 106.08034 * 179.86447 * 8 7 5 10 10 C 1.39701 * 134.19639 * 180.12509 * 9 8 7 11 11 C 1.36610 * 119.71748 * 180.29286 * 10 9 8 12 12 C 1.38845 * 120.44305 * 359.97438 * 11 10 9 13 13 C 1.37793 * 120.74397 * 0.04515 * 12 11 10 14 14 C 1.39030 * 119.85333 * 359.95643 * 13 12 11 15 15 O 1.34714 * 133.24475 * 180.02562 * 14 13 12 16 16 C 1.53294 * 109.51411 * 239.89734 * 2 1 3 17 17 N 1.47151 * 108.38209 * 292.37993 * 16 2 1 18 18 C 1.36934 * 120.98407 * 129.44538 * 17 16 2 19 19 H 1.08005 * 119.99855 * 333.75735 * 18 17 16 20 20 C 1.38814 * 120.00512 * 153.75825 * 18 17 16 21 21 N 1.31613 * 120.00430 * 160.00326 * 20 18 17 22 22 Si 1.86801 * 119.99572 * 340.00024 * 20 18 17 23 23 H 1.48500 * 109.46914 * 91.87154 * 22 20 18 24 24 H 1.48493 * 109.47166 * 211.87097 * 22 20 18 25 25 H 1.48495 * 109.47294 * 331.87627 * 22 20 18 26 26 C 1.47152 * 118.03490 * 309.45998 * 17 16 2 27 27 C 1.53299 * 108.38371 * 50.53957 * 26 17 16 28 28 O 1.42962 * 109.21991 * 307.69357 * 27 26 17 29 29 H 1.08999 * 109.46929 * 180.10507 * 1 2 3 30 30 H 1.09002 * 109.47101 * 300.10633 * 1 2 3 31 31 H 1.09001 * 109.47032 * 60.10416 * 1 2 3 32 32 H 1.08995 * 109.47249 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46884 * 299.99725 * 3 2 1 34 34 H 0.97000 * 120.00184 * 0.02562 * 4 3 2 35 35 H 1.08000 * 126.95986 * 359.96092 * 8 7 5 36 36 H 1.08006 * 120.13954 * 0.27152 * 10 9 8 37 37 H 1.07998 * 119.78559 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.62863 * 180.02562 * 12 11 10 39 39 H 1.07989 * 120.07573 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.68086 * 52.09948 * 16 2 1 41 41 H 1.09003 * 109.68285 * 172.61610 * 16 2 1 42 42 H 0.96997 * 120.00298 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.67917 * 170.26136 * 26 17 16 44 44 H 1.08999 * 109.68349 * 290.81718 * 26 17 16 45 45 H 1.08998 * 109.51188 * 67.62009 * 27 26 17 46 46 H 1.08996 * 109.51044 * 187.72379 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1331 1.1961 5 6 1.8793 3.4234 1.4091 6 8 2.5792 4.0141 0.6083 7 6 1.3895 4.1168 2.6089 8 6 1.6575 5.4092 2.9288 9 6 0.9670 5.6654 4.1922 10 6 0.8474 6.7780 5.0286 11 6 0.1117 6.6866 6.1760 12 6 -0.5176 5.4964 6.5154 13 6 -0.4117 4.3875 5.7044 14 6 0.3316 4.4563 4.5315 15 8 0.6105 3.5636 3.5619 16 6 2.0420 -0.7247 -1.2500 17 7 1.6959 -2.1502 -1.1344 18 6 1.0608 -2.8064 -2.1548 19 1 0.4405 -2.2564 -2.8471 20 6 1.2142 -4.1784 -2.2995 21 7 0.3359 -4.8691 -2.9951 22 14 2.6672 -5.0444 -1.5070 23 1 2.2819 -5.5206 -0.1542 24 1 3.0693 -6.2034 -2.3438 25 1 3.8056 -4.0977 -1.3928 26 6 2.0521 -2.8497 0.1102 27 6 1.5396 -2.0215 1.2940 28 8 2.0076 -0.6768 1.1652 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 3.1310 1.4414 -0.0005 33 1 1.6781 1.9562 -0.8901 34 1 0.9955 1.6621 1.8348 35 1 2.2577 6.1070 2.3637 36 1 1.3348 7.7062 4.7692 37 1 0.0188 7.5459 6.8236 38 1 -1.0963 5.4390 7.4255 39 1 -0.9060 3.4673 5.9786 40 1 1.5704 -0.3032 -2.1378 41 1 3.1240 -0.6136 -1.3214 42 1 0.4433 -5.8278 -3.0965 43 1 1.5872 -3.8355 0.1232 44 1 3.1352 -2.9532 0.1762 45 1 0.4496 -2.0288 1.2987 46 1 1.9106 -2.4492 2.2253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108379856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:06 Heat of formation + Delta-G solvation = -12.751988 kcal Electronic energy + Delta-G solvation = -29774.781873 eV Core-core repulsion = 25632.286420 eV Total energy + Delta-G solvation = -4142.495453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.81659 -40.01164 -39.04698 -38.17883 -35.39010 -34.53411 -33.14145 -32.31979 -31.47835 -30.80683 -29.96947 -28.45369 -26.92061 -26.14096 -24.13959 -23.20107 -23.03346 -22.02343 -21.46957 -20.71508 -19.25043 -18.47542 -17.79424 -17.04763 -16.72779 -16.61877 -16.17099 -15.81176 -15.60661 -15.21881 -14.87115 -14.61950 -14.41697 -14.27684 -14.01802 -13.90413 -13.68466 -13.46956 -13.29284 -12.88988 -12.65587 -12.46170 -12.37369 -12.34832 -11.91519 -11.63758 -11.49653 -11.39026 -11.07518 -10.86424 -10.58868 -10.57867 -10.35957 -10.32565 -9.73177 -9.57504 -9.45170 -9.24923 -9.04596 -8.62534 -8.61264 -7.07439 -6.03135 -3.40653 0.22730 0.94431 1.52409 2.14642 2.93772 2.97024 3.24439 3.29559 3.43396 3.46052 3.95065 4.12317 4.24062 4.44539 4.51014 4.67016 4.67900 4.78896 4.84263 4.98765 5.07594 5.16051 5.20470 5.25219 5.33858 5.42710 5.63311 5.70363 5.74513 5.77574 5.79443 5.83222 5.93217 5.95638 6.00770 6.02354 6.12281 6.16624 6.19023 6.27465 6.42743 6.44567 6.53539 6.65915 6.69744 7.31252 7.56549 7.79653 7.88791 8.22062 8.79859 9.60882 9.96519 11.12306 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.002216 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.963873 B =12632.498574 C =13130.412582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.086 3.914 3 C 0.136 3.864 4 N -0.701 5.701 5 C 0.595 3.405 6 O -0.519 6.519 7 C -0.018 4.018 8 C -0.117 4.117 9 C -0.144 4.144 10 C -0.061 4.061 11 C -0.140 4.140 12 C -0.085 4.085 13 C -0.110 4.110 14 C 0.070 3.930 15 O -0.183 6.183 16 C 0.131 3.869 17 N -0.603 5.603 18 C -0.261 4.261 19 H 0.089 0.911 20 C 0.024 3.976 21 N -0.906 5.906 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.302 1.302 25 H -0.271 1.271 26 C 0.089 3.911 27 C 0.046 3.954 28 O -0.380 6.380 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.411 0.589 35 H 0.171 0.829 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.057 0.943 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 21.090 18.550 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 C 0.012 3.988 4 N -0.351 5.351 5 C 0.380 3.620 6 O -0.397 6.397 7 C -0.068 4.068 8 C -0.138 4.138 9 C -0.145 4.145 10 C -0.079 4.079 11 C -0.158 4.158 12 C -0.103 4.103 13 C -0.128 4.128 14 C 0.021 3.979 15 O -0.084 6.084 16 C 0.005 3.995 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.106 0.894 20 C -0.175 4.175 21 N -0.549 5.549 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.230 1.230 25 H -0.196 1.196 26 C -0.037 4.037 27 C -0.032 4.032 28 O -0.299 6.299 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.247 0.753 35 H 0.188 0.812 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.783 21.095 17.958 27.714 hybrid contribution 0.413 -1.017 0.543 1.225 sum -0.370 20.077 18.500 27.304 Atomic orbital electron populations 1.22276 0.94952 1.04083 1.01295 1.22241 0.94110 0.90289 0.88898 1.21497 1.00262 0.89880 0.87121 1.45866 1.52401 1.10863 1.26005 1.16652 0.80560 0.81932 0.82868 1.90894 1.37934 1.66465 1.44405 1.22066 0.98958 0.93925 0.91876 1.22733 1.00843 0.95116 0.95088 1.19951 1.02344 0.95334 0.96884 1.20379 0.97509 0.96876 0.93102 1.20814 0.99095 0.98422 0.97462 1.21024 0.98536 0.91815 0.98939 1.20037 1.00687 1.00615 0.91473 1.19778 0.99336 0.87591 0.91168 1.84043 1.57520 1.38582 1.28280 1.21457 0.97788 0.85530 0.94766 1.44296 1.69231 1.05685 1.13561 1.18886 1.21806 0.91128 1.07029 0.89367 1.25245 0.97964 0.96497 0.97828 1.69813 1.34278 1.07142 1.43634 0.86971 0.85162 0.78898 0.77517 1.21636 1.23045 1.19562 1.22034 0.98228 0.96792 0.86618 1.23098 0.99024 0.82354 0.98739 1.87844 1.72816 1.26183 1.43082 0.90073 0.93331 0.91627 0.90170 0.89399 0.75284 0.81174 0.85141 0.85094 0.84524 0.84621 0.90697 0.94740 0.92645 0.90063 0.94776 0.92515 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 7.92 37.16 0.29 -2.25 16 2 C 0.09 1.36 0.76 -90.47 -0.07 1.29 16 3 C 0.14 1.89 4.82 -4.04 -0.02 1.87 16 4 N -0.70 -9.18 5.15 -61.53 -0.32 -9.50 16 5 C 0.60 8.21 7.79 -12.72 -0.10 8.11 16 6 O -0.52 -8.38 16.83 5.22 0.09 -8.29 16 7 C -0.02 -0.23 7.07 -36.91 -0.26 -0.49 16 8 C -0.12 -1.29 10.80 -37.24 -0.40 -1.69 16 9 C -0.14 -1.48 6.38 -105.19 -0.67 -2.15 16 10 C -0.06 -0.47 10.06 -39.62 -0.40 -0.86 16 11 C -0.14 -0.88 9.98 -39.94 -0.40 -1.28 16 12 C -0.09 -0.54 10.01 -39.52 -0.40 -0.93 16 13 C -0.11 -0.90 10.07 -39.45 -0.40 -1.30 16 14 C 0.07 0.75 7.41 -38.34 -0.28 0.47 16 15 O -0.18 -2.21 10.28 2.78 0.03 -2.18 16 16 C 0.13 2.48 5.40 -3.53 -0.02 2.46 16 17 N -0.60 -13.71 2.35 -171.82 -0.40 -14.12 16 18 C -0.26 -6.98 10.10 -15.06 -0.15 -7.13 16 19 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 20 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 21 N -0.91 -27.06 13.97 55.49 0.78 -26.28 16 22 Si 0.88 21.93 24.29 -169.99 -4.13 17.80 16 23 H -0.29 -6.84 6.58 56.52 0.37 -6.47 16 24 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.27 -6.68 6.55 56.52 0.37 -6.31 16 26 C 0.09 1.87 4.38 -3.53 -0.02 1.86 16 27 C 0.05 0.79 6.60 37.31 0.25 1.03 16 28 O -0.38 -6.41 9.98 -35.23 -0.35 -6.77 16 29 H 0.08 1.44 6.11 -51.93 -0.32 1.12 16 30 H 0.05 0.64 6.86 -51.93 -0.36 0.28 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.41 5.07 6.92 -40.82 -0.28 4.79 16 35 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.07 1.37 7.95 -51.93 -0.41 0.95 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.08 1.84 4.61 -51.93 -0.24 1.61 16 44 H 0.03 0.74 6.87 -51.93 -0.36 0.38 16 45 H 0.06 0.96 6.25 -51.93 -0.32 0.64 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -32.10 370.81 -7.99 -40.09 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.14 Total: 4.07 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.13 Total: -0.41 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.05 Total: -49.90 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.24 Total: -17.24 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.13 Total: 17.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.10 -7.99 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108379856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds