Wall clock time and date at job start Wed Apr 1 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.51601 * 2 1 4 4 N 1.46499 * 109.46880 * 305.10131 * 3 2 1 5 5 C 1.34780 * 119.99796 * 180.02562 * 4 3 2 6 6 O 1.21657 * 120.00130 * 359.97438 * 5 4 3 7 7 C 1.46982 * 119.99944 * 180.02562 * 5 4 3 8 8 C 1.35808 * 125.12959 * 179.97438 * 7 5 4 9 9 C 1.46246 * 106.07628 * 180.02562 * 8 7 5 10 10 C 1.39703 * 134.18495 * 179.97438 * 9 8 7 11 11 C 1.36622 * 119.70675 * 179.76834 * 10 9 8 12 12 C 1.38834 * 120.44290 * 0.51327 * 11 10 9 13 13 C 1.37796 * 120.74546 * 359.48148 * 12 11 10 14 14 C 1.39023 * 119.85173 * 0.25531 * 13 12 11 15 15 O 1.34719 * 133.24096 * 179.97438 * 14 13 12 16 16 C 1.53292 * 109.51302 * 120.10504 * 2 1 3 17 17 N 1.47151 * 108.38639 * 67.66650 * 16 2 1 18 18 C 1.36944 * 120.98156 * 230.55772 * 17 16 2 19 19 H 1.08000 * 119.99776 * 153.28440 * 18 17 16 20 20 C 1.38811 * 119.99970 * 333.28671 * 18 17 16 21 21 N 1.31614 * 120.00031 * 343.57098 * 20 18 17 22 22 Si 1.86800 * 119.99666 * 163.57853 * 20 18 17 23 23 H 1.48500 * 109.47470 * 59.99939 * 22 20 18 24 24 H 1.48503 * 109.46786 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47010 * 299.99432 * 22 20 18 26 26 C 1.47147 * 118.03740 * 50.53583 * 17 16 2 27 27 C 1.53294 * 108.38441 * 309.46765 * 26 17 16 28 28 O 1.42961 * 109.55130 * 239.87129 * 2 1 3 29 29 H 1.09006 * 109.46824 * 59.99522 * 1 2 3 30 30 H 1.08995 * 109.47726 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46640 * 300.00405 * 1 2 3 32 32 H 1.09005 * 109.46984 * 185.10364 * 3 2 1 33 33 H 1.08995 * 109.47176 * 65.10219 * 3 2 1 34 34 H 0.96996 * 120.00059 * 359.97438 * 4 3 2 35 35 H 1.07997 * 126.96365 * 0.02562 * 8 7 5 36 36 H 1.08000 * 120.14852 * 0.04576 * 10 9 8 37 37 H 1.08007 * 119.77800 * 180.24995 * 11 10 9 38 38 H 1.08003 * 119.62742 * 179.75328 * 12 11 10 39 39 H 1.08002 * 120.06986 * 180.23431 * 13 12 11 40 40 H 1.08996 * 109.68634 * 187.39660 * 16 2 1 41 41 H 1.09008 * 109.67890 * 307.94345 * 16 2 1 42 42 H 0.97000 * 119.99775 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.67844 * 69.18878 * 26 17 16 44 44 H 1.08996 * 109.68146 * 189.70030 * 26 17 16 45 45 H 1.09006 * 109.51018 * 172.22613 * 27 26 17 46 46 H 1.09001 * 109.50837 * 292.32197 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4556 2.1676 -1.1300 5 6 1.7652 3.4638 -1.3318 6 8 2.5305 4.0313 -0.5753 7 6 1.1774 4.1919 -2.4653 8 6 1.4155 5.4949 -2.7651 9 6 0.6255 5.7862 -3.9609 10 6 0.4379 6.9230 -4.7509 11 6 -0.3884 6.8637 -5.8373 12 6 -1.0501 5.6851 -6.1543 13 6 -0.8786 4.5529 -5.3879 14 6 -0.0386 4.5874 -4.2806 15 8 0.3193 3.6667 -3.3646 16 6 2.0420 -0.7247 1.2500 17 7 1.6969 -2.1505 1.1339 18 6 1.0618 -2.8073 2.1540 19 1 0.4429 -3.6663 1.9404 20 6 1.2134 -2.3691 3.4623 21 7 2.1955 -1.5495 3.7722 22 14 0.0235 -2.9428 4.7832 23 1 0.0802 -4.4227 4.8917 24 1 0.4000 -2.3366 6.0855 25 1 -1.3553 -2.5253 4.4225 26 6 2.0540 -2.8495 -0.1107 27 6 1.5414 -2.0212 -1.2945 28 8 2.0084 -0.6762 -1.1652 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.1273 1.4425 -0.0914 33 1 1.7547 1.9290 0.9321 34 1 0.8458 1.7150 -1.7334 35 1 2.0581 6.1776 -2.2292 36 1 0.9473 7.8434 -4.5065 37 1 -0.5311 7.7408 -6.4512 38 1 -1.7033 5.6541 -7.0138 39 1 -1.3958 3.6408 -5.6466 40 1 3.1240 -0.6135 1.3216 41 1 1.5698 -0.3038 2.1377 42 1 2.3011 -1.2430 4.6864 43 1 3.1372 -2.9522 -0.1762 44 1 1.5903 -3.8358 -0.1238 45 1 1.9138 -2.4481 -2.2258 46 1 0.4515 -2.0301 -1.3001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108379857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:10 Heat of formation + Delta-G solvation = -18.326792 kcal Electronic energy + Delta-G solvation = -29881.878604 eV Core-core repulsion = 25739.141409 eV Total energy + Delta-G solvation = -4142.737194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.74158 -39.80676 -38.80278 -38.10784 -35.12514 -34.38591 -33.06598 -31.91600 -31.28232 -30.74052 -29.86100 -27.97975 -26.72911 -25.86883 -23.95455 -23.25365 -22.95228 -21.89108 -21.20875 -20.59034 -18.93932 -18.28405 -17.72784 -17.10280 -16.62493 -16.42770 -15.94025 -15.63733 -15.23251 -15.04540 -14.65722 -14.46747 -14.32741 -14.09996 -13.95060 -13.53753 -13.49228 -13.28091 -13.06884 -12.82465 -12.64438 -12.50280 -12.30574 -11.98498 -11.61812 -11.33367 -11.22184 -11.04247 -10.83966 -10.70716 -10.50611 -10.41614 -10.33039 -10.29427 -9.98153 -9.57821 -9.12292 -9.05066 -8.96690 -8.56295 -8.53357 -6.76260 -5.86999 -3.30935 0.30408 1.00202 1.60930 2.23168 3.07401 3.11208 3.33171 3.35391 3.39685 3.39980 4.16238 4.23628 4.31929 4.41506 4.56396 4.73627 4.86438 4.91155 5.05301 5.10074 5.27382 5.31412 5.42900 5.47848 5.48903 5.63967 5.78218 5.88407 5.89877 5.90126 5.95145 6.01872 6.02916 6.06033 6.10512 6.20382 6.24970 6.37837 6.48018 6.60990 6.72187 6.73824 6.80079 7.03963 7.42573 7.47043 7.68297 7.84710 8.04102 8.30800 9.08324 9.71195 10.28544 11.21074 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.002308 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.469051 B =12130.015399 C =12495.544460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C 0.137 3.863 4 N -0.701 5.701 5 C 0.592 3.408 6 O -0.518 6.518 7 C -0.015 4.015 8 C -0.120 4.120 9 C -0.143 4.143 10 C -0.061 4.061 11 C -0.140 4.140 12 C -0.086 4.086 13 C -0.110 4.110 14 C 0.069 3.931 15 O -0.183 6.183 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.384 6.384 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.408 0.592 35 H 0.171 0.829 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.031 0.969 41 H 0.097 0.903 42 H 0.257 0.743 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 14.101 -18.922 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 C 0.014 3.986 4 N -0.351 5.351 5 C 0.377 3.623 6 O -0.396 6.396 7 C -0.065 4.065 8 C -0.140 4.140 9 C -0.144 4.144 10 C -0.079 4.079 11 C -0.158 4.158 12 C -0.104 4.104 13 C -0.128 4.128 14 C 0.020 3.980 15 O -0.084 6.084 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.304 6.304 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.245 0.755 35 H 0.188 0.812 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.049 0.951 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.345 14.302 -18.278 23.816 hybrid contribution -0.947 -0.607 0.624 1.286 sum -6.292 13.695 -17.654 23.213 Atomic orbital electron populations 1.22220 0.95694 1.03404 1.00758 1.22559 0.93641 0.90421 0.89743 1.21501 0.99047 0.89638 0.88461 1.45992 1.47887 1.10164 1.31093 1.16679 0.81305 0.82014 0.82319 1.90898 1.35567 1.68075 1.45046 1.22149 0.96769 0.94079 0.93532 1.22731 1.00690 0.94779 0.95841 1.19955 1.01253 0.95233 0.97964 1.20380 0.97337 0.96625 0.93550 1.20805 0.98467 0.98560 0.98006 1.21006 0.98832 0.91728 0.98870 1.20026 0.99486 1.00354 0.92940 1.19778 0.98717 0.87193 0.92294 1.84046 1.52856 1.38064 1.33481 1.21292 0.97909 0.83994 0.93460 1.43978 1.68612 1.04877 1.13907 1.19112 1.21471 1.12576 0.85308 0.91468 1.25052 0.97231 1.00055 0.97134 1.69994 1.29136 1.36770 1.18653 0.86353 0.80894 0.78382 0.81038 1.20839 1.21525 1.20972 1.21602 0.97586 0.95224 0.87319 1.23044 0.98340 0.83029 0.98769 1.87827 1.72868 1.25887 1.43780 0.93951 0.90637 0.91747 0.90203 0.89383 0.75513 0.81171 0.85160 0.85139 0.84580 0.84674 0.95120 0.88493 0.93337 0.95607 0.92011 0.90145 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 7.86 37.16 0.29 -2.49 16 2 C 0.08 1.43 0.78 -90.47 -0.07 1.36 16 3 C 0.14 2.31 4.85 -4.04 -0.02 2.29 16 4 N -0.70 -10.54 5.19 -61.53 -0.32 -10.86 16 5 C 0.59 9.18 7.80 -12.72 -0.10 9.08 16 6 O -0.52 -9.35 16.83 5.23 0.09 -9.26 16 7 C -0.02 -0.21 7.07 -36.91 -0.26 -0.47 16 8 C -0.12 -1.44 10.81 -37.24 -0.40 -1.85 16 9 C -0.14 -1.58 6.38 -105.20 -0.67 -2.25 16 10 C -0.06 -0.51 10.06 -39.62 -0.40 -0.91 16 11 C -0.14 -0.96 9.98 -39.94 -0.40 -1.36 16 12 C -0.09 -0.59 10.01 -39.52 -0.40 -0.98 16 13 C -0.11 -0.96 10.07 -39.45 -0.40 -1.36 16 14 C 0.07 0.79 7.41 -38.35 -0.28 0.51 16 15 O -0.18 -2.38 10.28 2.77 0.03 -2.35 16 16 C 0.16 3.67 4.11 -3.54 -0.01 3.66 16 17 N -0.59 -14.21 2.57 -171.83 -0.44 -14.65 16 18 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 21 N -0.90 -25.41 11.14 55.49 0.62 -24.79 16 22 Si 0.90 21.12 29.58 -169.99 -5.03 16.09 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 C 0.11 2.22 6.73 -3.54 -0.02 2.19 16 27 C 0.05 0.79 6.60 37.31 0.25 1.04 16 28 O -0.38 -7.09 10.18 -35.23 -0.36 -7.44 16 29 H 0.04 0.62 6.57 -51.93 -0.34 0.27 16 30 H 0.07 1.40 6.12 -51.93 -0.32 1.09 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.41 5.69 6.70 -40.82 -0.27 5.42 16 35 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.10 2.45 6.16 -51.92 -0.32 2.13 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.81 6.26 -51.93 -0.33 0.48 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -30.99 377.29 -9.05 -40.04 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.19 Total: 5.91 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.13 Total: 1.62 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.14 Total: -50.30 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.24 Total: -19.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.99 -9.05 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108379857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.710 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds