Wall clock time and date at job start Wed Apr 1 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.51601 * 2 1 4 4 N 1.46499 * 109.46880 * 305.10131 * 3 2 1 5 5 C 1.34780 * 119.99796 * 180.02562 * 4 3 2 6 6 O 1.21657 * 120.00130 * 359.97438 * 5 4 3 7 7 C 1.46982 * 119.99944 * 180.02562 * 5 4 3 8 8 C 1.35808 * 125.12959 * 179.97438 * 7 5 4 9 9 C 1.46246 * 106.07628 * 180.02562 * 8 7 5 10 10 C 1.39703 * 134.18495 * 179.97438 * 9 8 7 11 11 C 1.36622 * 119.70675 * 179.76834 * 10 9 8 12 12 C 1.38834 * 120.44290 * 0.51327 * 11 10 9 13 13 C 1.37796 * 120.74546 * 359.48148 * 12 11 10 14 14 C 1.39023 * 119.85173 * 0.25531 * 13 12 11 15 15 O 1.34719 * 133.24096 * 179.97438 * 14 13 12 16 16 C 1.53292 * 109.51302 * 120.10504 * 2 1 3 17 17 N 1.47151 * 108.38639 * 67.66650 * 16 2 1 18 18 C 1.36944 * 120.98156 * 230.55772 * 17 16 2 19 19 H 1.08000 * 119.99776 * 153.28440 * 18 17 16 20 20 C 1.38811 * 119.99970 * 333.28671 * 18 17 16 21 21 N 1.31614 * 120.00031 * 343.57098 * 20 18 17 22 22 Si 1.86800 * 119.99666 * 163.57853 * 20 18 17 23 23 H 1.48500 * 109.47470 * 59.99939 * 22 20 18 24 24 H 1.48503 * 109.46786 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47010 * 299.99432 * 22 20 18 26 26 C 1.47147 * 118.03740 * 50.53583 * 17 16 2 27 27 C 1.53294 * 108.38441 * 309.46765 * 26 17 16 28 28 O 1.42961 * 109.55130 * 239.87129 * 2 1 3 29 29 H 1.09006 * 109.46824 * 59.99522 * 1 2 3 30 30 H 1.08995 * 109.47726 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46640 * 300.00405 * 1 2 3 32 32 H 1.09005 * 109.46984 * 185.10364 * 3 2 1 33 33 H 1.08995 * 109.47176 * 65.10219 * 3 2 1 34 34 H 0.96996 * 120.00059 * 359.97438 * 4 3 2 35 35 H 1.07997 * 126.96365 * 0.02562 * 8 7 5 36 36 H 1.08000 * 120.14852 * 0.04576 * 10 9 8 37 37 H 1.08007 * 119.77800 * 180.24995 * 11 10 9 38 38 H 1.08003 * 119.62742 * 179.75328 * 12 11 10 39 39 H 1.08002 * 120.06986 * 180.23431 * 13 12 11 40 40 H 1.08996 * 109.68634 * 187.39660 * 16 2 1 41 41 H 1.09008 * 109.67890 * 307.94345 * 16 2 1 42 42 H 0.97000 * 119.99775 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.67844 * 69.18878 * 26 17 16 44 44 H 1.08996 * 109.68146 * 189.70030 * 26 17 16 45 45 H 1.09006 * 109.51018 * 172.22613 * 27 26 17 46 46 H 1.09001 * 109.50837 * 292.32197 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4556 2.1676 -1.1300 5 6 1.7652 3.4638 -1.3318 6 8 2.5305 4.0313 -0.5753 7 6 1.1774 4.1919 -2.4653 8 6 1.4155 5.4949 -2.7651 9 6 0.6255 5.7862 -3.9609 10 6 0.4379 6.9230 -4.7509 11 6 -0.3884 6.8637 -5.8373 12 6 -1.0501 5.6851 -6.1543 13 6 -0.8786 4.5529 -5.3879 14 6 -0.0386 4.5874 -4.2806 15 8 0.3193 3.6667 -3.3646 16 6 2.0420 -0.7247 1.2500 17 7 1.6969 -2.1505 1.1339 18 6 1.0618 -2.8073 2.1540 19 1 0.4429 -3.6663 1.9404 20 6 1.2134 -2.3691 3.4623 21 7 2.1955 -1.5495 3.7722 22 14 0.0235 -2.9428 4.7832 23 1 0.0802 -4.4227 4.8917 24 1 0.4000 -2.3366 6.0855 25 1 -1.3553 -2.5253 4.4225 26 6 2.0540 -2.8495 -0.1107 27 6 1.5414 -2.0212 -1.2945 28 8 2.0084 -0.6762 -1.1652 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.1273 1.4425 -0.0914 33 1 1.7547 1.9290 0.9321 34 1 0.8458 1.7150 -1.7334 35 1 2.0581 6.1776 -2.2292 36 1 0.9473 7.8434 -4.5065 37 1 -0.5311 7.7408 -6.4512 38 1 -1.7033 5.6541 -7.0138 39 1 -1.3958 3.6408 -5.6466 40 1 3.1240 -0.6135 1.3216 41 1 1.5698 -0.3038 2.1377 42 1 2.3011 -1.2430 4.6864 43 1 3.1372 -2.9522 -0.1762 44 1 1.5903 -3.8358 -0.1238 45 1 1.9138 -2.4481 -2.2258 46 1 0.4515 -2.0301 -1.3001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108379857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:09 Heat of formation + Delta-G solvation = -37.563302 kcal Electronic energy + Delta-G solvation = -29882.712761 eV Core-core repulsion = 25739.141409 eV Total energy + Delta-G solvation = -4143.571352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.57774 -41.17446 -40.21770 -38.79898 -36.65454 -36.05313 -33.88156 -33.36424 -33.19218 -31.41059 -30.72248 -29.59747 -28.16769 -27.53512 -25.10498 -24.87713 -23.70769 -22.95963 -22.52012 -21.70607 -20.41178 -19.48790 -18.92273 -18.46685 -17.62763 -17.46721 -17.22233 -16.95399 -16.75303 -16.22477 -16.05726 -15.79212 -15.60037 -15.31420 -15.20099 -14.99533 -14.71445 -14.51989 -14.19036 -14.10699 -14.03305 -13.51774 -13.26372 -13.20578 -12.94655 -12.86203 -12.77058 -12.55365 -12.45666 -12.18992 -11.98177 -11.94108 -11.88991 -11.64268 -11.31962 -11.13792 -10.77180 -10.51100 -10.36572 -9.68515 -9.31259 -8.71672 -7.89824 -5.37021 -0.51783 0.34259 0.76365 1.32147 1.46534 1.48391 1.55218 1.94380 1.96894 2.47899 2.71942 2.75450 3.23750 3.31388 3.47427 3.58441 3.85185 3.91039 3.96105 3.99964 4.06702 4.16830 4.31572 4.39642 4.43684 4.47323 4.51535 4.55277 4.59916 4.68895 4.74262 4.80956 4.92601 5.01707 5.07600 5.08478 5.14351 5.19318 5.25435 5.32557 5.36617 5.47958 5.52310 5.54728 5.61306 5.98574 6.28608 6.29452 6.35079 6.83549 7.06916 7.75723 8.30103 9.15859 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.002308 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.469051 B =12130.015399 C =12495.544460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 C 0.146 3.854 4 N -0.693 5.693 5 C 0.596 3.404 6 O -0.552 6.552 7 C -0.044 4.044 8 C -0.108 4.108 9 C -0.167 4.167 10 C -0.067 4.067 11 C -0.135 4.135 12 C -0.072 4.072 13 C -0.125 4.125 14 C 0.046 3.954 15 O -0.194 6.194 16 C 0.168 3.832 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.103 3.897 27 C 0.052 3.948 28 O -0.387 6.387 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.416 0.584 35 H 0.179 0.821 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.150 0.850 40 H -0.003 1.003 41 H 0.069 0.931 42 H 0.251 0.749 43 H 0.013 0.987 44 H 0.072 0.928 45 H 0.117 0.883 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 15.182 -22.166 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 C 0.022 3.978 4 N -0.344 5.344 5 C 0.383 3.617 6 O -0.432 6.432 7 C -0.094 4.094 8 C -0.129 4.129 9 C -0.168 4.168 10 C -0.085 4.085 11 C -0.153 4.153 12 C -0.090 4.090 13 C -0.143 4.143 14 C -0.002 4.002 15 O -0.096 6.096 16 C 0.041 3.959 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.202 1.202 26 C -0.023 4.023 27 C -0.025 4.025 28 O -0.307 6.307 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.253 0.747 35 H 0.196 0.804 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.168 0.832 40 H 0.015 0.985 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.031 0.969 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.600 15.363 -21.574 27.554 hybrid contribution -0.266 -0.884 1.443 1.713 sum -7.866 14.479 -20.130 26.014 Atomic orbital electron populations 1.22119 0.94121 1.02976 1.01959 1.22212 0.94582 0.90415 0.87654 1.21219 0.98341 0.89121 0.89128 1.45797 1.47879 1.10139 1.30556 1.16854 0.80655 0.81757 0.82457 1.90867 1.37127 1.68720 1.46510 1.21673 0.98962 0.94499 0.94246 1.23006 0.99755 0.94259 0.95884 1.20164 1.01918 0.96393 0.98289 1.20749 0.97657 0.96489 0.93556 1.21283 0.96917 0.99753 0.97321 1.21531 0.97874 0.90739 0.98808 1.20421 0.99440 1.01998 0.92454 1.20317 0.99761 0.87204 0.92937 1.83978 1.53063 1.38719 1.33887 1.21053 0.95663 0.84368 0.94793 1.44227 1.68643 1.05490 1.14707 1.19458 1.21097 1.12448 0.86016 0.90932 1.25797 0.98727 1.00714 0.99190 1.70163 1.30946 1.38434 1.18563 0.85356 0.79070 0.78016 0.78098 1.20131 1.22309 1.20152 1.21807 0.97090 0.96300 0.87073 1.23117 0.99077 0.81735 0.98604 1.87839 1.73204 1.26575 1.43047 0.90998 0.91758 0.92294 0.91478 0.89906 0.74662 0.80376 0.83166 0.81756 0.81021 0.83196 0.98529 0.91242 0.94001 0.96856 0.90911 0.86551 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 7.86 71.98 0.57 -4.61 16 2 C 0.09 3.46 0.78 -10.70 -0.01 3.45 16 3 C 0.15 5.13 4.85 86.38 0.42 5.55 16 4 N -0.69 -21.14 5.19 -466.80 -2.42 -23.56 16 5 C 0.60 19.05 7.80 86.53 0.67 19.72 16 6 O -0.55 -20.76 16.83 -4.21 -0.07 -20.83 16 7 C -0.04 -1.22 7.07 24.00 0.17 -1.06 16 8 C -0.11 -2.62 10.81 23.79 0.26 -2.36 16 9 C -0.17 -3.50 6.38 -20.24 -0.13 -3.63 16 10 C -0.07 -0.93 10.06 22.25 0.22 -0.71 16 11 C -0.14 -1.28 9.98 22.03 0.22 -1.06 16 12 C -0.07 -0.69 10.01 22.31 0.22 -0.46 16 13 C -0.12 -1.88 10.07 22.35 0.23 -1.66 16 14 C 0.05 1.01 7.41 23.07 0.17 1.18 16 15 O -0.19 -5.03 10.28 -12.99 -0.13 -5.16 16 16 C 0.17 8.06 4.11 86.35 0.35 8.41 16 17 N -0.61 -29.75 2.57 -697.55 -1.79 -31.54 16 18 C -0.26 -13.86 9.65 84.03 0.81 -13.05 16 19 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 20 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 21 N -0.94 -54.82 11.14 21.65 0.24 -54.58 16 22 Si 0.97 44.08 29.58 68.60 2.03 46.10 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 C 0.10 4.14 6.73 86.35 0.58 4.72 16 27 C 0.05 1.69 6.60 72.08 0.48 2.17 16 28 O -0.39 -13.98 10.18 -148.98 -1.52 -15.49 16 29 H 0.07 1.97 6.57 -2.38 -0.02 1.96 16 30 H 0.06 2.32 6.12 -2.39 -0.01 2.30 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.42 11.36 6.70 -92.71 -0.62 10.74 16 35 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.07 3.70 6.16 -2.38 -0.01 3.69 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 45 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 46 H 0.06 1.85 6.26 -2.39 -0.01 1.83 16 Total: -1.00 -70.04 377.29 2.38 -67.66 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.39 Total: 23.06 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.65 Total: 14.36 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.97 Total: -109.69 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.72 Total: -41.49 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.04 2.38 -67.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108379857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.096 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds