Wall clock time and date at job start Wed Apr 1 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99714 * 2 1 4 4 N 1.46505 * 109.47032 * 124.99591 * 3 2 1 5 5 C 1.34783 * 119.99451 * 84.20671 * 4 3 2 6 6 O 1.21350 * 119.99602 * 175.53444 * 5 4 3 7 7 C 1.49446 * 120.00143 * 355.53690 * 5 4 3 8 8 O 1.21346 * 120.00334 * 354.39910 * 7 5 4 9 9 N 1.34780 * 120.00049 * 174.11682 * 7 5 4 10 10 C 1.46497 * 120.00209 * 180.27723 * 9 7 5 11 11 C 1.50703 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.38319 * 119.96323 * 269.71898 * 11 10 9 13 13 C 1.38283 * 120.13806 * 179.76692 * 12 11 10 14 14 C 1.38124 * 120.06639 * 0.51229 * 13 12 11 15 15 C 1.38858 * 119.93053 * 359.74827 * 14 13 12 16 16 O 1.35747 * 120.07074 * 179.97438 * 15 14 13 17 17 C 1.34836 * 116.99560 * 5.81125 * 16 15 14 18 18 H 1.07993 * 120.00268 * 5.38761 * 17 16 15 19 19 C 1.38653 * 119.99628 * 185.39236 * 17 16 15 20 20 N 1.31556 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47445 * 89.99967 * 21 19 17 23 23 H 1.48506 * 109.47151 * 209.99682 * 21 19 17 24 24 H 1.48494 * 109.47470 * 329.99623 * 21 19 17 25 25 C 1.38072 * 119.96759 * 90.00135 * 11 10 9 26 26 C 1.46497 * 120.00388 * 264.20823 * 4 3 2 27 27 C 1.52995 * 117.49654 * 197.08304 * 26 4 3 28 28 C 1.52999 * 60.00156 * 252.51160 * 27 26 4 29 29 H 1.08007 * 119.99425 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00194 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00194 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46900 * 5.00121 * 3 2 1 33 33 H 1.08994 * 109.47377 * 244.99710 * 3 2 1 34 34 H 0.97004 * 119.99705 * 0.27536 * 9 7 5 35 35 H 1.09000 * 109.47293 * 300.00137 * 10 9 7 36 36 H 1.09003 * 109.47244 * 59.99878 * 10 9 7 37 37 H 1.08001 * 119.93258 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.96546 * 180.25938 * 13 12 11 39 39 H 1.07997 * 120.03384 * 179.76872 * 14 13 12 40 40 H 0.97004 * 120.00023 * 179.97438 * 20 19 17 41 41 H 1.08009 * 120.03343 * 359.94959 * 25 11 10 42 42 H 1.08994 * 115.54663 * 342.79889 * 26 4 3 43 43 H 1.08997 * 117.50287 * 0.02562 * 27 26 4 44 44 H 1.09006 * 117.49497 * 145.02393 * 27 26 4 45 45 H 1.08995 * 117.49852 * 252.51137 * 28 27 26 46 46 H 1.09003 * 117.51388 * 107.48857 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.2094 0.7613 1.0181 6 8 5.0100 0.8535 1.9253 7 6 4.5714 0.0149 -0.2250 8 8 3.7387 -0.1648 -1.0892 9 7 5.8244 -0.4538 -0.3889 10 6 6.1810 -1.1802 -1.6101 11 6 7.6287 -1.5935 -1.5442 12 6 8.6101 -0.7542 -2.0398 13 6 9.9400 -1.1277 -1.9768 14 6 10.2914 -2.3455 -1.4280 15 6 9.3081 -3.1927 -0.9345 16 8 9.6503 -4.3905 -0.3949 17 6 10.9671 -4.6463 -0.2580 18 1 11.6928 -3.8811 -0.4902 19 6 11.3892 -5.8920 0.1807 20 7 10.5051 -6.8241 0.4638 21 14 13.2134 -6.2463 0.3710 22 1 13.6459 -5.8908 1.7466 23 1 13.4650 -7.6900 0.1307 24 1 13.9796 -5.4399 -0.6127 25 6 7.9736 -2.8122 -0.9944 26 6 2.6025 1.9792 2.3863 27 6 3.7149 2.3331 3.3753 28 6 2.7635 1.1734 3.6768 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 6.4902 -0.3101 0.3018 35 1 5.5540 -2.0671 -1.7015 36 1 6.0259 -0.5351 -2.4750 37 1 8.3374 0.1968 -2.4731 38 1 10.7043 -0.4683 -2.3608 39 1 11.3299 -2.6384 -1.3824 40 1 10.8004 -7.6957 0.7704 41 1 7.2065 -3.4688 -0.6110 42 1 1.7527 2.6584 2.3198 43 1 4.7378 2.0848 3.0923 44 1 3.5971 3.2456 3.9597 45 1 2.0200 1.3229 4.4596 46 1 3.1603 0.1616 3.5924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117382550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:52 Heat of formation + Delta-G solvation = -11.459701 kcal Electronic energy + Delta-G solvation = -29008.779717 eV Core-core repulsion = 24866.340302 eV Total energy + Delta-G solvation = -4142.439415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18452 -40.90320 -40.06293 -38.52842 -37.94600 -36.42126 -35.66814 -34.30410 -33.38585 -32.31848 -30.81898 -28.15724 -27.36002 -26.97610 -25.66204 -23.39157 -23.30072 -22.98290 -22.35186 -21.20791 -20.70003 -19.60495 -19.05227 -18.64487 -17.73644 -17.33965 -17.12538 -16.75008 -16.65124 -16.44068 -16.12068 -15.94328 -15.58727 -15.49552 -15.30320 -14.95120 -14.76265 -14.39122 -14.35514 -14.11138 -13.96911 -13.72266 -13.40428 -13.15508 -13.03303 -12.81539 -12.54147 -12.46020 -12.40673 -12.29229 -12.12629 -11.91169 -11.79717 -11.35992 -11.26476 -10.82871 -10.43200 -10.33964 -10.17204 -9.77333 -9.63255 -9.05452 -8.48746 -6.17298 0.26304 0.31132 0.68432 1.10566 1.34532 1.43316 1.51934 1.54975 2.02543 2.16245 2.42433 2.82070 2.94950 3.12325 3.28696 3.34540 3.77537 3.82586 3.94887 4.03178 4.06727 4.11272 4.22086 4.28258 4.38014 4.43657 4.49724 4.58263 4.62200 4.70593 4.76789 4.81136 4.98560 5.00145 5.08398 5.09377 5.13844 5.23133 5.25966 5.58847 5.59351 5.67319 5.69395 5.74857 5.86630 5.88763 5.99623 6.13085 6.17909 6.62298 6.89187 6.96035 7.76183 8.74506 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002135 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.152744 B =13109.750504 C =13484.541496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.548 5.548 5 C 0.503 3.497 6 O -0.532 6.532 7 C 0.502 3.498 8 O -0.523 6.523 9 N -0.688 5.688 10 C 0.174 3.826 11 C -0.064 4.064 12 C -0.166 4.166 13 C -0.071 4.071 14 C -0.233 4.233 15 C 0.110 3.890 16 O -0.232 6.232 17 C -0.412 4.412 18 H 0.103 0.897 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.181 4.181 26 C 0.069 3.931 27 C -0.202 4.202 28 C -0.190 4.190 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.170 0.830 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.809 21.560 -0.787 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C 0.017 3.983 4 N -0.278 5.278 5 C 0.286 3.714 6 O -0.411 6.411 7 C 0.283 3.717 8 O -0.400 6.400 9 N -0.340 5.340 10 C 0.052 3.948 11 C -0.065 4.065 12 C -0.185 4.185 13 C -0.089 4.089 14 C -0.252 4.252 15 C 0.060 3.940 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.174 1.174 25 C -0.201 4.201 26 C -0.034 4.034 27 C -0.239 4.239 28 C -0.229 4.229 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.188 0.812 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.146 21.094 -0.819 27.196 hybrid contribution 1.263 -1.205 0.573 1.837 sum -15.883 19.890 -0.246 25.454 Atomic orbital electron populations 1.24015 0.95013 1.03103 0.98757 1.23097 0.96408 0.98266 1.01353 1.21176 0.92203 0.96545 0.88404 1.47320 1.13366 1.52360 1.14750 1.20336 0.83062 0.80455 0.87568 1.90594 1.50553 1.59179 1.40735 1.20184 0.83087 0.80989 0.87483 1.90744 1.48220 1.57444 1.43578 1.45928 1.11503 1.54555 1.22007 1.20251 0.90630 0.96887 0.87024 1.19441 0.95146 0.93040 0.98830 1.21032 0.91823 1.00899 1.04763 1.21185 0.97271 0.94348 0.96050 1.21396 0.99442 0.97419 1.06981 1.19878 0.94674 0.86680 0.92760 1.83958 1.27673 1.30857 1.71421 1.21811 0.80165 0.99960 1.46880 0.87960 1.26599 1.05727 0.93900 0.95891 1.70188 1.36645 1.05142 1.43971 0.84589 0.73836 0.78255 0.79563 1.18913 1.19694 1.17429 1.20242 0.92963 0.98911 1.07974 1.22220 1.01925 1.00329 0.78916 1.24020 0.98813 0.99768 1.01294 1.23249 1.03800 0.96323 0.99513 0.88298 0.86111 0.89946 0.86684 0.88107 0.74956 0.90723 0.87829 0.83070 0.83249 0.86179 0.91855 0.87459 0.81240 0.86499 0.86804 0.85946 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.17 -3.08 8.70 25.65 0.22 -2.86 16 3 C 0.14 2.11 5.49 85.63 0.47 2.58 16 4 N -0.55 -10.39 2.84 -803.72 -2.28 -12.67 16 5 C 0.50 12.42 7.45 87.27 0.65 13.07 16 6 O -0.53 -15.31 12.39 -3.25 -0.04 -15.35 16 7 C 0.50 12.76 7.70 87.27 0.67 13.43 16 8 O -0.52 -13.79 11.65 -3.23 -0.04 -13.83 16 9 N -0.69 -17.60 5.54 -468.14 -2.59 -20.19 16 10 C 0.17 4.47 5.80 85.63 0.50 4.97 16 11 C -0.06 -2.01 5.25 -19.88 -0.10 -2.11 16 12 C -0.17 -4.69 9.70 22.30 0.22 -4.47 16 13 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 14 C -0.23 -9.72 9.13 22.39 0.20 -9.51 16 15 C 0.11 5.37 6.65 22.58 0.15 5.52 16 16 O -0.23 -13.90 9.76 -22.77 -0.22 -14.12 16 17 C -0.41 -23.82 9.44 67.92 0.64 -23.18 16 18 H 0.10 5.38 5.30 -2.91 -0.02 5.37 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 20 N -0.92 -56.80 13.67 21.61 0.30 -56.50 16 21 Si 1.02 42.73 29.55 68.60 2.03 44.75 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 25 C -0.18 -7.49 9.64 22.39 0.22 -7.27 16 26 C 0.07 1.05 6.62 44.99 0.30 1.35 16 27 C -0.20 -3.62 9.64 30.59 0.29 -3.33 16 28 C -0.19 -3.36 9.90 30.59 0.30 -3.06 16 29 H 0.10 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.12 0.97 7.84 -2.91 -0.02 0.95 16 31 H 0.08 1.97 7.18 -2.91 -0.02 1.95 16 32 H 0.12 0.96 7.60 -2.39 -0.02 0.94 16 33 H 0.10 1.80 5.92 -2.39 -0.01 1.78 16 34 H 0.41 10.97 7.95 -92.71 -0.74 10.24 16 35 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 36 H 0.10 2.23 8.08 -2.39 -0.02 2.21 16 37 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.12 5.12 5.71 -2.91 -0.02 5.10 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 41 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.17 1.30 8.04 -2.39 -0.02 1.28 16 43 H 0.12 2.90 4.94 -27.45 -0.14 2.76 16 44 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.07 1.57 7.85 -2.39 -0.02 1.55 16 Total: -1.00 -73.61 388.98 3.70 -69.92 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.16 Total: 37.04 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 6.39 Total: -19.05 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -4.58 Total: -89.36 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.30 Total: -43.30 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.61 3.70 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117382550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.455 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds