Wall clock time and date at job start Wed Apr 1 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40373 * 126.64523 * 2 1 4 4 C 1.35128 * 107.11243 * 179.83855 * 3 2 1 5 5 O 1.33934 * 108.76980 * 0.43361 * 4 3 2 6 6 C 1.34913 * 109.38160 * 359.72362 * 5 4 3 7 7 C 1.46660 * 125.98210 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99377 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00506 * 0.02580 * 7 6 5 10 10 C 1.46494 * 120.00346 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47474 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47524 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00435 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47727 * 179.97438 * 13 12 11 15 15 C 1.38301 * 119.93088 * 269.73221 * 14 13 12 16 16 C 1.38095 * 120.06748 * 179.72100 * 15 14 13 17 17 C 1.38877 * 119.93076 * 0.56791 * 16 15 14 18 18 O 1.35754 * 120.06687 * 179.68490 * 17 16 15 19 19 C 1.34834 * 116.99898 * 174.48469 * 18 17 16 20 20 H 1.08004 * 119.99762 * 5.05526 * 19 18 17 21 21 C 1.38647 * 120.00091 * 185.05435 * 19 18 17 22 22 N 1.31554 * 120.00286 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47286 * 89.99848 * 23 21 19 25 25 H 1.48497 * 109.47266 * 210.00318 * 23 21 19 26 26 H 1.48505 * 109.46781 * 330.00084 * 23 21 19 27 27 C 1.38876 * 119.86381 * 359.70064 * 17 16 15 28 28 C 1.38096 * 119.93190 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46779 * 269.68103 * 1 2 3 30 30 H 1.09000 * 109.46915 * 149.68344 * 1 2 3 31 31 H 1.08998 * 109.47129 * 29.68361 * 1 2 3 32 32 H 1.07994 * 126.43948 * 0.02562 * 3 2 1 33 33 H 1.08001 * 125.61531 * 180.16340 * 4 3 2 34 34 H 0.97001 * 119.99475 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.47318 * 300.00383 * 10 9 7 36 36 H 1.09003 * 109.46814 * 60.00184 * 10 9 7 37 37 H 1.09010 * 109.47098 * 300.00285 * 11 10 9 38 38 H 1.08997 * 109.47234 * 59.99897 * 11 10 9 39 39 H 1.00895 * 110.99865 * 303.95583 * 12 11 10 40 40 H 1.09002 * 109.47196 * 299.99855 * 13 12 11 41 41 H 1.08997 * 109.47298 * 59.99401 * 13 12 11 42 42 H 1.08008 * 119.96304 * 359.96721 * 15 14 13 43 43 H 1.08004 * 120.03551 * 180.26982 * 16 15 14 44 44 H 0.96995 * 120.00365 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.03622 * 179.97438 * 27 17 16 46 46 H 1.07998 * 119.97169 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 0.0036 5 8 3.6005 -0.6647 -0.0037 6 6 2.3220 -1.0955 -0.0061 7 6 1.8843 -2.4952 -0.0143 8 8 0.6968 -2.7614 -0.0162 9 7 2.7972 -3.4868 -0.0198 10 6 2.3600 -4.8849 -0.0275 11 6 3.5844 -5.8022 -0.0320 12 7 3.1460 -7.2042 -0.0403 13 6 4.2978 -8.1160 -0.0442 14 6 3.8099 -9.5418 -0.0520 15 6 3.5908 -10.2028 1.1429 16 6 3.1382 -11.5074 1.1390 17 6 2.9143 -12.1596 -0.0664 18 8 2.4755 -13.4443 -0.0735 19 6 2.1694 -13.9800 -1.2723 20 1 2.3546 -13.4201 -2.1771 21 6 1.6168 -15.2496 -1.3436 22 7 1.3916 -15.9318 -0.2415 23 14 1.1933 -15.9922 -3.0046 24 1 2.3643 -16.7430 -3.5242 25 1 0.0401 -16.9156 -2.8544 26 1 0.8387 -14.9080 -3.9555 27 6 3.1405 -11.4950 -1.2647 28 6 3.5877 -10.1885 -1.2542 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 2.0306 2.1595 0.0004 33 1 4.5046 1.2917 0.0071 34 1 3.7437 -3.2745 -0.0180 35 1 1.7611 -5.0833 0.8614 36 1 1.7611 -5.0734 -0.9185 37 1 4.1837 -5.6040 -0.9208 38 1 4.1830 -5.6136 0.8592 39 1 2.5355 -7.3967 0.7396 40 1 4.9025 -7.9337 -0.9326 41 1 4.9007 -7.9436 0.8473 42 1 3.7701 -9.6967 2.0801 43 1 2.9632 -12.0217 2.0725 44 1 1.0047 -16.8199 -0.2913 45 1 2.9677 -11.9997 -2.2038 46 1 3.7642 -9.6712 -2.1857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123536091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:28 Heat of formation + Delta-G solvation = -48.688296 kcal Electronic energy + Delta-G solvation = -27339.519537 eV Core-core repulsion = 23195.465769 eV Total energy + Delta-G solvation = -4144.053768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.67992 -40.79039 -40.58385 -38.74783 -37.36876 -35.68809 -34.90879 -34.27058 -32.12495 -31.76115 -31.25613 -29.44827 -28.21637 -27.37948 -25.34136 -23.91126 -23.60122 -23.05735 -22.22593 -21.90170 -20.98131 -19.82705 -19.21089 -18.81479 -17.52673 -17.25233 -17.20870 -16.85306 -16.44745 -16.32762 -16.11012 -15.68016 -15.59615 -15.43088 -15.11446 -14.96007 -14.57993 -14.39631 -14.28071 -14.23990 -14.04067 -13.90042 -13.58200 -13.53345 -13.35389 -12.97641 -12.80546 -12.64455 -12.52162 -12.32760 -12.23615 -12.13556 -11.99846 -11.32909 -11.16016 -10.79127 -10.68745 -10.33361 -9.75663 -9.57803 -9.37907 -8.89702 -8.46882 -6.15044 0.00589 0.62489 0.68606 1.35041 1.40190 1.44083 1.52573 1.64341 2.04751 2.14705 2.18129 2.81162 3.13271 3.52932 3.54478 3.72356 3.80117 3.88598 3.96896 4.04853 4.10034 4.17174 4.23375 4.48401 4.52622 4.53925 4.62241 4.62402 4.73088 4.73668 4.76635 4.85087 4.90088 4.94043 5.10071 5.11312 5.16017 5.17170 5.25781 5.32454 5.44974 5.58282 5.73732 5.82838 5.84347 6.03364 6.04703 6.26369 6.39578 6.42368 6.97911 6.98045 7.79035 8.76359 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.001400 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.902759 B =20001.292204 C =20506.677224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.238 4.238 4 C 0.017 3.983 5 O -0.169 6.169 6 C -0.119 4.119 7 C 0.598 3.402 8 O -0.555 6.555 9 N -0.706 5.706 10 C 0.125 3.875 11 C 0.059 3.941 12 N -0.695 5.695 13 C 0.126 3.874 14 C -0.160 4.160 15 C -0.059 4.059 16 C -0.206 4.206 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.022 4.022 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.246 4.246 28 C -0.050 4.050 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.180 0.820 33 H 0.256 0.744 34 H 0.417 0.583 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.345 0.655 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.149 0.851 43 H 0.112 0.888 44 H 0.272 0.728 45 H 0.116 0.884 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 36.505 0.024 37.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.257 4.257 4 C -0.053 4.053 5 O -0.065 6.065 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.436 6.436 9 N -0.358 5.358 10 C 0.001 3.999 11 C -0.071 4.071 12 N -0.328 5.328 13 C -0.002 4.002 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.226 4.226 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.178 1.178 27 C -0.265 4.265 28 C -0.068 4.068 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.198 0.802 33 H 0.272 0.728 34 H 0.254 0.746 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.166 0.834 43 H 0.130 0.870 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.314 35.691 -0.418 36.435 hybrid contribution 0.080 -0.714 0.393 0.819 sum 7.394 34.977 -0.026 35.750 Atomic orbital electron populations 1.20432 0.88273 1.03544 1.03024 1.21030 0.98168 0.92030 0.98687 1.22107 0.92458 1.00706 1.10439 1.25338 1.01330 0.79654 0.98950 1.84043 1.27261 1.24161 1.71026 1.21602 0.82585 0.94253 1.18634 1.16730 0.85444 0.82737 0.76485 1.90855 1.17226 1.83084 1.52406 1.45657 1.10367 1.05780 1.73984 1.21231 0.97436 0.78802 1.02419 1.22005 0.95309 0.87175 1.02582 1.60345 1.18938 1.02218 1.51269 1.20605 0.91182 0.86407 1.02049 1.19643 1.07315 0.96912 0.92244 1.20916 0.95966 0.92058 0.98758 1.20453 1.10116 0.96882 0.95101 1.19979 0.93449 0.84879 0.95459 1.83938 1.74348 1.22380 1.33438 1.21815 1.42791 1.00831 0.83560 0.88204 1.26573 0.95870 0.95784 1.03757 1.70180 1.43000 1.12742 1.29975 0.84597 0.78491 0.78358 0.74828 1.18684 1.19570 1.17804 1.21264 1.10358 0.97670 0.97221 1.20928 0.94999 0.92146 0.98745 0.90590 0.91719 0.89383 0.80244 0.72799 0.74622 0.91846 0.91744 0.89291 0.92806 0.83620 0.89541 0.92837 0.83368 0.87022 0.91865 0.86668 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 9.82 71.24 0.70 -0.84 16 2 C -0.10 -1.59 6.20 -19.74 -0.12 -1.71 16 3 C -0.24 -2.31 10.83 22.07 0.24 -2.07 16 4 C 0.02 0.11 12.08 67.10 0.81 0.92 16 5 O -0.17 -2.19 10.40 -5.06 -0.05 -2.25 16 6 C -0.12 -2.17 7.13 24.07 0.17 -2.00 16 7 C 0.60 12.90 7.79 86.44 0.67 13.57 16 8 O -0.56 -15.79 14.74 -4.35 -0.06 -15.86 16 9 N -0.71 -11.17 5.55 -467.11 -2.59 -13.76 16 10 C 0.12 2.13 5.93 86.38 0.51 2.64 16 11 C 0.06 0.80 5.80 86.30 0.50 1.30 16 12 N -0.70 -13.34 6.49 -517.96 -3.36 -16.70 16 13 C 0.13 2.52 5.81 85.56 0.50 3.02 16 14 C -0.16 -4.72 5.40 -19.83 -0.11 -4.83 16 15 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 16 C -0.21 -8.73 9.99 22.39 0.22 -8.51 16 17 C 0.11 5.68 6.65 22.58 0.15 5.83 16 18 O -0.23 -14.36 9.76 -22.82 -0.22 -14.58 16 19 C -0.41 -24.54 9.49 67.92 0.64 -23.89 16 20 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 22 N -0.92 -57.20 13.67 21.61 0.30 -56.91 16 23 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 27 C -0.25 -10.86 9.17 22.39 0.21 -10.65 16 28 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.35 6.44 -2.39 -0.02 1.33 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.26 -0.89 8.06 -2.91 -0.02 -0.91 16 34 H 0.42 4.37 8.23 -92.71 -0.76 3.60 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.35 6.77 8.72 -89.70 -0.78 5.98 16 40 H 0.09 1.57 8.08 -2.39 -0.02 1.56 16 41 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 42 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 43 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 46 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -80.15 396.28 1.51 -78.65 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -0.51 Total: 27.03 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 5.99 Total: -31.19 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -5.66 Total: -87.37 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.34 Total: -32.68 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -80.15 1.51 -78.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123536091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.957 kcal (2) G-P(sol) polarization free energy of solvation -80.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds