Wall clock time and date at job start Wed Apr 1 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99951 * 2 1 4 4 O 1.20819 * 120.00228 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99492 * 180.02562 * 3 2 1 6 6 C 1.53009 * 109.46865 * 155.00274 * 5 3 2 7 7 C 1.53000 * 109.47035 * 274.99752 * 5 3 2 8 8 C 1.50700 * 109.47466 * 300.00243 * 7 5 3 9 9 C 1.34239 * 126.50397 * 265.00379 * 8 7 5 10 10 N 1.36834 * 109.92851 * 180.02562 * 9 8 7 11 11 H 0.96999 * 125.05933 * 180.02562 * 10 9 8 12 12 C 1.37684 * 109.87550 * 359.97438 * 10 9 8 13 13 C 1.39123 * 133.50709 * 179.97438 * 12 10 9 14 14 C 1.37755 * 119.77684 * 180.02562 * 13 12 10 15 15 C 1.38833 * 120.66853 * 359.97438 * 14 13 12 16 16 C 1.36628 * 120.52451 * 359.97438 * 15 14 13 17 17 C 1.39623 * 119.76540 * 359.97438 * 16 15 14 18 18 N 1.46499 * 109.47359 * 35.00368 * 5 3 2 19 19 C 1.34769 * 120.00040 * 59.99655 * 18 5 3 20 20 O 1.21278 * 120.00384 * 0.02562 * 19 18 5 21 21 C 1.50698 * 119.99926 * 179.97438 * 19 18 5 22 22 C 1.50697 * 109.47254 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00078 * 0.02562 * 22 21 19 24 24 C 1.37885 * 119.99958 * 179.97438 * 22 21 19 25 25 N 1.31509 * 119.99676 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99933 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46809 * 90.00033 * 26 24 22 28 28 H 1.48496 * 109.47002 * 209.99581 * 26 24 22 29 29 H 1.48498 * 109.47303 * 329.99785 * 26 24 22 30 30 H 1.08993 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46487 * 299.99867 * 1 2 3 32 32 H 1.09002 * 109.47144 * 59.99256 * 1 2 3 33 33 H 1.08997 * 109.46818 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.46801 * 299.99526 * 6 5 3 35 35 H 1.08996 * 109.46780 * 59.99802 * 6 5 3 36 36 H 1.09004 * 109.47397 * 180.02562 * 7 5 3 37 37 H 1.08998 * 109.47265 * 60.00450 * 7 5 3 38 38 H 1.07992 * 125.03293 * 359.97360 * 9 8 7 39 39 H 1.07996 * 120.11326 * 0.31780 * 13 12 10 40 40 H 1.08001 * 119.66142 * 179.97438 * 14 13 12 41 41 H 1.07992 * 119.73662 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.11150 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99478 * 239.99808 * 18 5 3 44 44 H 1.09001 * 109.47604 * 300.00670 * 21 19 18 45 45 H 1.09008 * 109.47192 * 60.00196 * 21 19 18 46 46 H 0.97000 * 119.99803 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0071 2.6072 -0.6101 7 6 4.0828 1.1756 1.4362 8 6 3.5206 2.3115 2.2516 9 6 4.1157 3.4895 2.4969 10 7 3.3037 4.2693 3.2746 11 1 3.5182 5.1640 3.5816 12 6 2.1365 3.5952 3.5554 13 6 0.9972 3.9161 4.2865 14 6 -0.0310 3.0048 4.3862 15 6 0.0569 1.7671 3.7635 16 6 1.1661 1.4316 3.0397 17 6 2.2197 2.3406 2.9245 18 7 4.1129 0.1706 -0.7933 19 6 3.7924 0.0540 -2.0972 20 8 3.0520 0.8634 -2.6144 21 6 4.3551 -1.0814 -2.9127 22 6 3.8458 -0.9842 -4.3277 23 1 3.1815 -0.1803 -4.6085 24 6 4.2289 -1.9209 -5.2642 25 7 3.7840 -1.8363 -6.4988 26 14 5.3785 -3.3110 -4.7787 27 1 4.5806 -4.4717 -4.3083 28 1 6.1923 -3.7134 -5.9538 29 1 6.2763 -2.8528 -3.6882 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 5.0955 2.6644 -0.6101 34 1 3.6392 2.6778 -1.6337 35 1 3.6004 3.4287 -0.0203 36 1 5.1713 1.2330 1.4359 37 1 3.7689 0.2265 1.8705 38 1 5.0912 3.7785 2.1347 39 1 0.9171 4.8783 4.7703 40 1 -0.9143 3.2557 4.9546 41 1 -0.7579 1.0639 3.8519 42 1 1.2277 0.4668 2.5583 43 1 4.7054 -0.4765 -0.3797 44 1 5.4436 -1.0240 -2.9132 45 1 4.0416 -2.0309 -2.4786 46 1 4.0531 -2.4955 -7.1576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:47 Heat of formation + Delta-G solvation = -57.529044 kcal Electronic energy + Delta-G solvation = -31208.207193 eV Core-core repulsion = 27063.770061 eV Total energy + Delta-G solvation = -4144.437132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59698 -40.40301 -38.68495 -37.14267 -36.34613 -35.50331 -32.84907 -32.81309 -31.06370 -29.74269 -29.40065 -28.58011 -27.70771 -26.78474 -23.86619 -23.01776 -22.98015 -21.87713 -20.75100 -19.39542 -19.19404 -17.99211 -17.43668 -16.89617 -16.58886 -16.46082 -16.19260 -15.70252 -15.51905 -14.91968 -14.53180 -14.28544 -14.23671 -14.10638 -13.92306 -13.68144 -13.29896 -13.08198 -12.90292 -12.62365 -12.36609 -12.22993 -12.08306 -11.93215 -11.81210 -11.72931 -11.59080 -11.43366 -11.31031 -10.94829 -10.79030 -10.56357 -10.41086 -10.16615 -9.96745 -9.66350 -9.24617 -8.76113 -8.68508 -8.55346 -8.32479 -7.78843 -6.01114 -4.00673 1.00388 1.52979 2.45422 2.61804 2.93314 3.00223 3.28061 3.33809 3.36405 3.59207 3.67763 3.83695 4.42321 4.53305 4.60818 4.79428 4.81722 4.87620 4.97999 5.10848 5.14612 5.26490 5.29993 5.35399 5.41776 5.45800 5.57396 5.58879 5.70709 5.74447 5.79222 5.83827 5.97925 6.00392 6.13615 6.34314 6.48656 6.51346 6.55299 6.61826 6.64494 6.78017 6.81961 6.93746 7.03115 7.34770 7.55213 8.07439 8.18646 8.57558 9.07346 9.19986 9.57048 11.11962 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.003044 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.195591 B = 9195.852269 C = 9756.534014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.474 3.526 4 O -0.495 6.495 5 C 0.196 3.804 6 C -0.153 4.153 7 C -0.045 4.045 8 C -0.171 4.171 9 C 0.066 3.934 10 N -0.594 5.594 11 H 0.415 0.585 12 C 0.097 3.903 13 C -0.131 4.131 14 C -0.100 4.100 15 C -0.146 4.146 16 C -0.069 4.069 17 C -0.088 4.088 18 N -0.738 5.738 19 C 0.526 3.474 20 O -0.523 6.523 21 C -0.027 4.027 22 C -0.511 4.511 23 H 0.092 0.908 24 C 0.068 3.932 25 N -0.898 5.898 26 Si 0.875 3.125 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.266 1.266 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.172 0.828 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.401 0.599 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 8.414 26.085 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.315 3.685 4 O -0.380 6.380 5 C 0.108 3.892 6 C -0.211 4.211 7 C -0.083 4.083 8 C -0.178 4.178 9 C -0.061 4.061 10 N -0.197 5.197 11 H 0.252 0.748 12 C -0.009 4.009 13 C -0.152 4.152 14 C -0.119 4.119 15 C -0.165 4.165 16 C -0.087 4.087 17 C -0.092 4.092 18 N -0.395 5.395 19 C 0.316 3.684 20 O -0.396 6.396 21 C -0.066 4.066 22 C -0.549 4.549 23 H 0.110 0.890 24 C -0.133 4.133 25 N -0.536 5.536 26 Si 0.702 3.298 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.190 1.190 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.189 0.811 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.235 0.765 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.923 9.342 25.506 27.179 hybrid contribution 0.711 -0.636 0.372 1.023 sum -0.213 8.706 25.878 27.304 Atomic orbital electron populations 1.23215 0.77206 1.03221 1.02227 1.86514 1.22684 1.33607 1.84028 1.23708 0.91637 0.81462 0.71701 1.90615 1.66446 1.36367 1.44592 1.20056 0.85943 0.90573 0.92672 1.22143 1.01105 0.94005 1.03848 1.20140 1.01032 0.97200 0.89953 1.19863 0.95154 0.96645 1.06188 1.21594 0.96826 0.91003 0.96647 1.41675 1.14869 1.16805 1.46340 0.74821 1.18195 0.88883 0.92892 1.00970 1.19983 0.92400 1.00411 1.02377 1.20763 0.97764 0.93633 0.99789 1.20585 0.98322 0.97336 1.00284 1.20297 0.92387 0.98418 0.97630 1.18964 0.95087 0.94258 1.00902 1.46390 1.52567 1.29503 1.10997 1.21463 0.79697 0.87134 0.80121 1.90589 1.35547 1.43038 1.70471 1.19672 0.97717 0.92372 0.96883 1.20990 1.29819 1.13599 0.90525 0.89020 1.24977 0.95974 0.97500 0.94860 1.69897 1.44895 1.36075 1.02767 0.86886 0.81524 0.83051 0.78387 1.20140 1.21216 1.19044 0.88508 0.92318 0.91993 0.91460 0.89598 0.90878 0.88694 0.89639 0.81115 0.86473 0.85941 0.86219 0.86530 0.76480 0.93515 0.93838 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.46 101.05 1.06 1.57 16 2 O -0.35 -6.08 9.74 -39.26 -0.38 -6.46 16 3 C 0.47 8.44 3.30 36.01 0.12 8.56 16 4 O -0.50 -9.85 14.84 -18.74 -0.28 -10.13 16 5 C 0.20 2.95 0.80 -132.97 -0.11 2.84 16 6 C -0.15 -2.35 7.58 37.16 0.28 -2.07 16 7 C -0.04 -0.49 4.92 -27.88 -0.14 -0.63 16 8 C -0.17 -1.97 4.17 -102.71 -0.43 -2.40 16 9 C 0.07 0.60 10.65 -16.73 -0.18 0.43 16 10 N -0.59 -5.28 6.07 -10.65 -0.06 -5.34 16 11 H 0.42 2.31 8.96 -40.82 -0.37 1.95 16 12 C 0.10 1.12 7.28 -83.99 -0.61 0.51 16 13 C -0.13 -1.34 10.08 -39.43 -0.40 -1.74 16 14 C -0.10 -1.00 10.01 -39.54 -0.40 -1.40 16 15 C -0.15 -1.61 9.97 -39.94 -0.40 -2.01 16 16 C -0.07 -0.87 8.58 -39.65 -0.34 -1.21 16 17 C -0.09 -1.14 5.25 -105.14 -0.55 -1.69 16 18 N -0.74 -11.75 4.88 -48.68 -0.24 -11.98 16 19 C 0.53 11.37 7.15 -10.99 -0.08 11.30 16 20 O -0.52 -13.45 12.67 5.56 0.07 -13.38 16 21 C -0.03 -0.62 4.53 -29.04 -0.13 -0.75 16 22 C -0.51 -14.91 9.48 -34.44 -0.33 -15.24 16 23 H 0.09 3.06 7.00 -52.49 -0.37 2.69 16 24 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 25 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 26 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.76 7.42 -51.92 -0.39 0.37 16 32 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.69 6.17 -51.93 -0.32 1.36 16 35 H 0.07 1.08 6.23 -51.93 -0.32 0.75 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.47 6.95 -52.49 -0.36 1.11 16 43 H 0.40 4.90 8.47 -40.82 -0.35 4.56 16 44 H 0.05 1.01 7.20 -51.93 -0.37 0.64 16 45 H 0.04 0.95 7.57 -51.92 -0.39 0.56 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -38.65 377.27 -8.04 -46.68 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.21 Total: 8.07 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.72 Total: -2.04 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.47 Total: -44.49 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.59 Total: -29.97 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.65 -8.04 -46.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.847 kcal (2) G-P(sol) polarization free energy of solvation -38.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds