Wall clock time and date at job start Wed Apr 1 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47376 * 2 1 4 4 C 1.52995 * 109.47135 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47202 * 180.02562 * 4 3 2 6 6 C 1.36372 * 119.99540 * 263.25202 * 5 4 3 7 7 H 1.08003 * 120.00083 * 135.50304 * 6 5 4 8 8 C 1.39397 * 120.00119 * 315.49699 * 6 5 4 9 9 N 1.31134 * 119.99862 * 348.93342 * 8 6 5 10 10 Si 1.86806 * 120.00036 * 168.92522 * 8 6 5 11 11 H 1.48504 * 109.46871 * 90.00364 * 10 8 6 12 12 H 1.48502 * 109.47077 * 210.00514 * 10 8 6 13 13 H 1.48502 * 109.47002 * 330.00480 * 10 8 6 14 14 C 1.34777 * 120.00237 * 83.24910 * 5 4 3 15 15 O 1.21591 * 120.00344 * 4.26764 * 14 5 4 16 16 C 1.47861 * 120.00050 * 184.26941 * 14 5 4 17 17 C 1.35932 * 118.91805 * 152.31553 * 16 14 5 18 18 C 1.41830 * 119.97725 * 179.97438 * 17 16 14 19 19 O 1.21998 * 121.01331 * 180.02562 * 18 17 16 20 20 C 1.47090 * 117.96725 * 359.97438 * 18 17 16 21 21 C 1.39714 * 121.24983 * 179.97438 * 20 18 17 22 22 C 1.36464 * 119.78295 * 180.02562 * 21 20 18 23 23 C 1.39481 * 120.48161 * 359.72262 * 22 21 20 24 24 O 1.35738 * 119.71658 * 180.30077 * 23 22 21 25 25 C 1.42901 * 116.99704 * 0.25903 * 24 23 22 26 26 C 1.38351 * 120.57180 * 0.56341 * 23 22 21 27 27 C 1.39013 * 119.69724 * 359.44131 * 26 23 22 28 28 N 1.36721 * 118.91010 * 332.29502 * 16 14 5 29 29 H 0.96995 * 119.22526 * 0.04222 * 28 16 14 30 30 H 1.09003 * 109.46816 * 300.00068 * 1 2 3 31 31 H 1.08996 * 109.47432 * 59.99308 * 1 2 3 32 32 H 1.08997 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46816 * 239.99932 * 2 1 3 34 34 H 1.08996 * 109.47020 * 120.00036 * 2 1 3 35 35 H 1.08997 * 109.46523 * 60.00199 * 3 2 1 36 36 H 1.09000 * 109.46959 * 300.00495 * 3 2 1 37 37 H 1.08995 * 109.47447 * 59.99965 * 4 3 2 38 38 H 1.09008 * 109.47114 * 300.00113 * 4 3 2 39 39 H 0.97005 * 119.99855 * 180.02562 * 9 8 6 40 40 H 1.07999 * 120.00774 * 359.95441 * 17 16 14 41 41 H 1.08001 * 120.10959 * 0.04773 * 21 20 18 42 42 H 1.08001 * 119.75988 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47501 * 299.99517 * 25 24 23 44 44 H 1.09002 * 109.47655 * 59.99978 * 25 24 23 45 45 H 1.09004 * 109.47177 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.15501 * 179.71896 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4160 3.4208 -1.1727 7 1 4.0997 4.4320 -1.3822 8 6 5.1900 2.7262 -2.1010 9 7 5.7551 1.5915 -1.7653 10 14 5.4220 3.4117 -3.8231 11 1 6.6213 4.2871 -3.8500 12 1 5.6050 2.2919 -4.7812 13 1 4.2243 4.2011 -4.2072 14 6 4.1542 3.5040 1.1594 15 8 3.9097 2.9480 2.2127 16 6 4.5567 4.9268 1.1506 17 6 4.1262 5.7379 2.1529 18 6 4.4992 7.1062 2.1669 19 8 4.1240 7.8509 3.0574 20 6 5.3531 7.5996 1.0756 21 6 5.7610 8.9348 1.0215 22 6 6.5529 9.3605 -0.0051 23 6 6.9632 8.4711 -0.9980 24 8 7.7558 8.9099 -2.0088 25 6 8.1325 10.2882 -1.9861 26 6 6.5648 7.1466 -0.9647 27 6 5.7580 6.6960 0.0739 28 7 5.3499 5.3830 0.1348 29 1 5.6322 4.7667 -0.5590 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9284 0.8892 39 1 6.2940 1.1083 -2.4111 40 1 3.5001 5.3405 2.9381 41 1 5.4508 9.6276 1.7897 42 1 6.8683 10.3927 -0.0463 43 1 7.2381 10.9100 -2.0244 44 1 8.6830 10.4995 -1.0694 45 1 8.7642 10.5064 -2.8473 46 1 6.8827 6.4647 -1.7395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154114244.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:15 Heat of formation + Delta-G solvation = -80.289199 kcal Electronic energy + Delta-G solvation = -30429.079926 eV Core-core repulsion = 26283.655840 eV Total energy + Delta-G solvation = -4145.424086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.37517 -40.99301 -40.12761 -38.76531 -37.49863 -37.12929 -35.66733 -33.73836 -33.12717 -31.33398 -31.14877 -29.91322 -28.08299 -27.32863 -26.16771 -24.43940 -23.85446 -23.25363 -22.07485 -21.54657 -20.15793 -19.82559 -19.34500 -18.11675 -17.73539 -17.27351 -16.87724 -16.74184 -16.64726 -16.41796 -16.21808 -16.12336 -15.63827 -15.51819 -15.08262 -14.81503 -14.64030 -14.50939 -14.20786 -14.19940 -13.84623 -13.73948 -13.43370 -13.28201 -13.19417 -13.05480 -13.03938 -12.85844 -12.21321 -12.13229 -12.01403 -11.93812 -11.90161 -11.84625 -11.48748 -11.27739 -10.92558 -10.58345 -10.48466 -9.68763 -9.40263 -8.81348 -8.53740 -6.47081 -0.51560 -0.10933 0.57187 1.37298 1.44963 1.54934 1.62650 1.83623 2.12086 2.15208 2.39139 2.53441 2.85153 2.98005 3.37945 3.59843 3.79716 3.88806 3.97792 4.07172 4.14358 4.18683 4.27261 4.31328 4.44983 4.47320 4.50906 4.67457 4.76696 4.81275 4.82297 4.83081 4.89521 4.90310 4.97527 5.01494 5.12260 5.15090 5.17808 5.33815 5.38076 5.41133 5.42103 5.49523 5.74596 5.89672 6.08736 6.27507 6.33412 6.76768 6.82067 7.17659 7.64358 8.45367 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.004009 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.297544 B = 6982.083239 C = 9009.208225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.120 3.880 5 N -0.420 5.420 6 C -0.395 4.395 7 H 0.103 0.897 8 C 0.030 3.970 9 N -0.860 5.860 10 Si 0.967 3.033 11 H -0.254 1.254 12 H -0.273 1.273 13 H -0.260 1.260 14 C 0.486 3.514 15 O -0.601 6.601 16 C 0.212 3.788 17 C -0.301 4.301 18 C 0.420 3.580 19 O -0.547 6.547 20 C -0.260 4.260 21 C 0.008 3.992 22 C -0.230 4.230 23 C 0.196 3.804 24 O -0.323 6.323 25 C 0.012 3.988 26 C -0.225 4.225 27 C 0.226 3.774 28 N -0.579 5.579 29 H 0.437 0.563 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.039 0.961 39 H 0.286 0.714 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.173 0.827 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 9.707 -7.536 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.159 4.159 4 C -0.003 4.003 5 N -0.136 5.136 6 C -0.522 4.522 7 H 0.120 0.880 8 C -0.180 4.180 9 N -0.492 5.492 10 Si 0.788 3.212 11 H -0.179 1.179 12 H -0.198 1.198 13 H -0.183 1.183 14 C 0.273 3.727 15 O -0.486 6.486 16 C 0.098 3.902 17 C -0.329 4.329 18 C 0.313 3.687 19 O -0.435 6.435 20 C -0.264 4.264 21 C -0.010 4.010 22 C -0.249 4.249 23 C 0.148 3.852 24 O -0.236 6.236 25 C -0.082 4.082 26 C -0.247 4.247 27 C 0.120 3.880 28 N -0.202 5.202 29 H 0.292 0.708 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.190 0.810 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.140 0.860 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.000 9.437 -6.890 12.064 hybrid contribution 0.116 -0.409 -0.587 0.725 sum 3.116 9.028 -7.477 12.130 Atomic orbital electron populations 1.21722 0.94379 1.02356 1.01731 1.21399 0.96953 0.94902 1.02024 1.21839 0.95153 0.98217 1.00728 1.21499 0.93201 0.83301 1.02271 1.43440 1.52963 1.12432 1.04802 1.19813 1.34401 1.02159 0.95806 0.88012 1.26355 0.92907 0.95695 1.03033 1.69804 1.26900 1.15273 1.37227 0.85307 0.80124 0.78929 0.76821 1.17863 1.19801 1.18350 1.18635 0.83178 0.86142 0.84761 1.90669 1.56753 1.69337 1.31883 1.20188 0.89226 0.93065 0.87749 1.22115 1.12395 0.95620 1.02801 1.18450 0.78622 0.87526 0.84138 1.90613 1.54627 1.60228 1.38005 1.20284 1.09967 0.96473 0.99722 1.20747 0.91226 0.92595 0.96474 1.21207 1.05551 1.01773 0.96408 1.18840 0.87804 0.91780 0.86764 1.86059 1.62728 1.30842 1.43954 1.23522 1.01688 0.77712 1.05245 1.19783 1.07183 0.96022 1.01673 1.17882 0.92647 0.83698 0.93736 1.43378 1.42817 1.09204 1.24819 0.70805 0.93211 0.92524 0.91077 0.91505 0.92335 0.94186 0.92257 0.88471 0.94196 0.90343 0.84423 0.83380 0.81004 0.90852 0.90917 0.85978 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.48 5.93 30.59 0.18 -3.30 16 3 C -0.12 -4.58 5.48 30.59 0.17 -4.41 16 4 C 0.12 5.30 4.84 86.38 0.42 5.71 16 5 N -0.42 -19.59 2.48 -638.91 -1.58 -21.17 16 6 C -0.39 -17.29 6.08 84.27 0.51 -16.78 16 7 H 0.10 4.33 6.48 -2.91 -0.02 4.31 16 8 C 0.03 1.28 5.06 85.08 0.43 1.71 16 9 N -0.86 -38.79 11.44 21.73 0.25 -38.54 16 10 Si 0.97 32.70 29.57 68.60 2.03 34.73 16 11 H -0.25 -8.13 7.11 99.48 0.71 -7.43 16 12 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 13 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 14 C 0.49 23.66 7.42 86.79 0.64 24.30 16 15 O -0.60 -32.13 16.17 -4.00 -0.06 -32.20 16 16 C 0.21 9.38 6.35 40.39 0.26 9.63 16 17 C -0.30 -13.37 9.45 22.62 0.21 -13.16 16 18 C 0.42 17.82 6.96 25.48 0.18 18.00 16 19 O -0.55 -25.04 17.32 -5.31 -0.09 -25.13 16 20 C -0.26 -9.38 5.89 -19.96 -0.12 -9.49 16 21 C 0.01 0.23 9.60 22.21 0.21 0.44 16 22 C -0.23 -5.09 8.96 22.16 0.20 -4.89 16 23 C 0.20 4.90 6.68 22.60 0.15 5.06 16 24 O -0.32 -6.83 10.48 -90.62 -0.95 -7.78 16 25 C 0.01 0.13 9.80 113.37 1.11 1.24 16 26 C -0.22 -6.75 9.84 22.48 0.22 -6.53 16 27 C 0.23 7.97 6.66 39.06 0.26 8.23 16 28 N -0.58 -22.75 4.24 -177.48 -0.75 -23.50 16 29 H 0.44 17.29 5.09 -92.71 -0.47 16.82 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.10 4.40 5.79 -2.39 -0.01 4.39 16 38 H 0.04 1.88 7.57 -2.38 -0.02 1.86 16 39 H 0.29 12.01 8.30 -92.70 -0.77 11.24 16 40 H 0.14 6.34 7.74 -2.91 -0.02 6.31 16 41 H 0.15 3.86 7.77 -2.91 -0.02 3.84 16 42 H 0.17 2.36 6.24 -2.91 -0.02 2.34 16 43 H 0.07 0.62 7.63 -2.39 -0.02 0.60 16 44 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 45 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -61.07 381.40 5.14 -55.93 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: 0.55 Total: 44.76 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 5.75 Total: 12.90 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.09 Total: -83.22 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -1.11 Total: -65.11 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Total: -61.07 5.14 -55.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154114244.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.357 kcal (2) G-P(sol) polarization free energy of solvation -61.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds