Wall clock time and date at job start Wed Apr 1 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34834 * 117.00231 * 2 1 4 4 O 1.21557 * 120.00154 * 359.97438 * 3 2 1 5 5 C 1.47089 * 120.00219 * 180.02562 * 3 2 1 6 6 C 1.39553 * 120.44558 * 354.33641 * 5 3 2 7 7 C 1.37780 * 120.18861 * 180.02562 * 6 5 3 8 8 C 1.39740 * 121.15729 * 359.97438 * 7 6 5 9 9 C 1.48303 * 119.54157 * 180.02562 * 8 7 6 10 10 C 1.40931 * 126.24446 * 179.97438 * 9 8 7 11 11 N 1.30644 * 108.07739 * 180.02562 * 10 9 8 12 12 N 1.40001 * 108.55642 * 359.97438 * 11 10 9 13 13 C 1.46501 * 125.87503 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46949 * 305.02763 * 13 12 11 15 15 C 1.53000 * 109.46787 * 184.99778 * 14 13 12 16 16 C 1.52994 * 109.47136 * 304.99899 * 14 13 12 17 17 O 1.42903 * 109.47083 * 64.99761 * 14 13 12 18 18 C 1.34731 * 108.25154 * 0.27002 * 12 11 10 19 19 C 1.38754 * 120.91004 * 0.29823 * 8 7 6 20 20 C 1.40510 * 119.73479 * 359.45264 * 19 8 7 21 21 C 1.40928 * 120.54816 * 180.26867 * 20 19 8 22 22 H 1.08000 * 120.00133 * 147.75046 * 21 20 19 23 23 C 1.40265 * 119.99712 * 327.74789 * 21 20 19 24 24 N 1.30632 * 120.00732 * 350.25396 * 23 21 20 25 25 Si 1.86804 * 119.99882 * 170.26014 * 23 21 20 26 26 H 1.48495 * 109.47347 * 89.99933 * 25 23 21 27 27 H 1.48502 * 109.46913 * 209.99899 * 25 23 21 28 28 H 1.48502 * 109.46834 * 329.99496 * 25 23 21 29 29 H 1.09001 * 109.46762 * 300.00542 * 1 2 3 30 30 H 1.09004 * 109.47001 * 59.99074 * 1 2 3 31 31 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.90906 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.42156 * 179.97438 * 7 6 5 34 34 H 1.07995 * 125.96147 * 0.02562 * 10 9 8 35 35 H 1.09000 * 109.47000 * 65.02674 * 13 12 11 36 36 H 1.08991 * 109.47122 * 185.03112 * 13 12 11 37 37 H 1.08996 * 109.47137 * 60.00165 * 15 14 13 38 38 H 1.09005 * 109.46526 * 180.02562 * 15 14 13 39 39 H 1.08997 * 109.47365 * 299.99698 * 15 14 13 40 40 H 1.09006 * 109.47257 * 60.00333 * 16 14 13 41 41 H 1.09005 * 109.47161 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.47490 * 299.99636 * 16 14 13 43 43 H 0.96694 * 114.00371 * 179.97438 * 17 14 13 44 44 H 1.08001 * 126.19463 * 179.74323 * 18 12 11 45 45 H 1.07999 * 120.12804 * 179.72597 * 19 8 7 46 46 H 0.96989 * 120.00397 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4022 2.2209 -0.0005 5 6 3.5331 1.2783 -0.0006 6 6 4.3019 0.1197 0.1176 7 6 5.6775 0.1980 0.1170 8 6 6.3317 1.4272 -0.0013 9 6 7.8141 1.4698 0.0016 10 6 8.6146 2.6244 -0.1092 11 7 9.8670 2.2548 -0.0670 12 7 9.9163 0.8626 0.0716 13 6 11.1329 0.0508 0.1571 14 6 12.0222 0.3358 -1.0550 15 6 13.2320 -0.6006 -1.0311 16 6 11.2235 0.1045 -2.3392 17 8 12.4689 1.6924 -1.0096 18 6 8.6525 0.3970 0.1064 19 6 5.6133 2.6088 -0.1158 20 6 4.2087 2.5724 -0.1248 21 6 3.4622 3.7615 -0.2460 22 1 2.5097 3.7516 -0.7549 23 6 3.9562 4.9579 0.2944 24 7 5.0069 4.9394 1.0705 25 14 3.1116 6.5778 -0.0954 26 1 2.0599 6.8443 0.9185 27 1 4.1114 7.6756 -0.0717 28 1 2.4922 6.5014 -1.4429 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.8174 -0.8411 0.2098 33 1 6.2604 -0.7064 0.2096 34 1 8.2555 3.6377 -0.2111 35 1 11.6727 0.3004 1.0705 36 1 10.8647 -1.0055 0.1705 37 1 12.8913 -1.6354 -1.0657 38 1 13.8658 -0.3973 -1.8944 39 1 13.8011 -0.4358 -0.1162 40 1 10.3616 0.7716 -2.3562 41 1 11.8569 0.3079 -3.2027 42 1 10.8828 -0.9303 -2.3739 43 1 13.0391 1.9437 -1.7490 44 1 8.3562 -0.6371 0.2025 45 1 6.1319 3.5522 -0.2022 46 1 5.3487 5.7667 1.4438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240197716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:41 Heat of formation + Delta-G solvation = -61.606813 kcal Electronic energy + Delta-G solvation = -29538.725391 eV Core-core repulsion = 25394.111434 eV Total energy + Delta-G solvation = -4144.613957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.10493 -40.92283 -39.22016 -38.67703 -36.95941 -35.67118 -34.58719 -32.92845 -32.21027 -31.49925 -29.89373 -28.59670 -28.27868 -27.19752 -27.02170 -24.24633 -23.21316 -22.12916 -21.90178 -20.92652 -20.50075 -19.11681 -18.25326 -18.13766 -17.48392 -17.36110 -16.98521 -16.79807 -16.73023 -15.68812 -15.63865 -15.16134 -15.09625 -14.92750 -14.53741 -14.30777 -14.18591 -14.16727 -13.92244 -13.70702 -13.35915 -13.33852 -13.08638 -12.91540 -12.83392 -12.78846 -12.71886 -12.58875 -12.56009 -12.31247 -12.05259 -11.85330 -11.53770 -11.52652 -11.25956 -11.17196 -10.90740 -10.68561 -10.26453 -10.14279 -9.27219 -8.76003 -8.38740 -6.41256 0.16556 1.08289 1.08572 1.34687 1.47590 1.50489 1.68640 1.76944 2.18890 2.19966 2.41924 2.83282 3.26524 3.48209 3.75269 3.88973 3.91676 4.00930 4.10560 4.33338 4.37477 4.41168 4.45017 4.46251 4.54445 4.62144 4.68279 4.72638 4.74886 4.85013 4.89623 4.90943 4.93639 5.05933 5.13333 5.18694 5.27117 5.33530 5.35181 5.58416 5.62212 5.79238 5.90737 6.05695 6.19328 6.22843 6.35616 6.66909 6.80729 6.86594 6.92525 6.93710 7.33093 8.22874 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.002947 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.148999 B = 9498.661367 C =11419.830351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.502 3.498 4 O -0.554 6.554 5 C -0.297 4.297 6 C -0.025 4.025 7 C -0.239 4.239 8 C 0.038 3.962 9 C -0.210 4.210 10 C 0.039 3.961 11 N -0.291 5.291 12 N -0.359 5.359 13 C 0.133 3.867 14 C 0.116 3.884 15 C -0.168 4.168 16 C -0.174 4.174 17 O -0.566 6.566 18 C 0.073 3.927 19 C -0.178 4.178 20 C 0.128 3.872 21 C -0.448 4.448 22 H 0.083 0.917 23 C 0.035 3.965 24 N -0.803 5.803 25 Si 0.980 3.020 26 H -0.268 1.268 27 H -0.255 1.255 28 H -0.262 1.262 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.168 0.832 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.384 0.616 44 H 0.211 0.789 45 H 0.109 0.891 46 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.359 -13.196 -3.499 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.354 3.646 4 O -0.448 6.448 5 C -0.300 4.300 6 C -0.044 4.044 7 C -0.258 4.258 8 C 0.036 3.964 9 C -0.222 4.222 10 C -0.147 4.147 11 N -0.112 5.112 12 N -0.140 5.140 13 C 0.013 3.987 14 C 0.075 3.925 15 C -0.226 4.226 16 C -0.232 4.232 17 O -0.373 6.373 18 C -0.074 4.074 19 C -0.197 4.197 20 C 0.124 3.876 21 C -0.476 4.476 22 H 0.101 0.899 23 C -0.182 4.182 24 N -0.428 5.428 25 Si 0.800 3.200 26 H -0.193 1.193 27 H -0.179 1.179 28 H -0.186 1.186 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.185 0.815 35 H 0.107 0.893 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.232 0.768 44 H 0.228 0.772 45 H 0.127 0.873 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.329 -12.476 -2.820 19.207 hybrid contribution -1.522 1.105 -0.468 1.938 sum 12.807 -11.371 -3.288 17.439 Atomic orbital electron populations 1.23370 0.76047 1.05043 1.01603 1.86542 1.24002 1.32934 1.85537 1.21365 0.89708 0.80694 0.72836 1.90699 1.67620 1.36606 1.49869 1.20069 0.87639 0.95713 1.26574 1.20995 0.93897 0.96082 0.93391 1.20558 0.93468 0.96390 1.15381 1.18213 0.89890 0.93421 0.94832 1.19173 0.93030 0.93018 1.16944 1.24038 0.90492 0.99947 1.00266 1.77373 1.19145 0.91046 1.23599 1.48554 1.05749 1.04651 1.55010 1.22258 0.81778 0.95290 0.99403 1.21514 0.93850 0.83420 0.93752 1.22382 0.96554 1.00028 1.03599 1.22432 1.00332 1.02679 0.97709 1.86738 1.70803 1.28030 1.51743 1.22948 0.83569 1.00506 1.00341 1.21167 0.92740 0.96869 1.08946 1.18705 0.92255 0.90840 0.85762 1.20184 1.05056 0.92728 1.29594 0.89933 1.26828 0.94806 1.04040 0.92558 1.69745 1.20021 1.31470 1.21524 0.85240 0.78849 0.76104 0.79770 1.19343 1.17884 1.18593 0.93093 0.92953 0.84703 0.85189 0.84667 0.81532 0.89322 0.83544 0.89426 0.90754 0.91425 0.95137 0.91115 0.89994 0.76790 0.77199 0.87318 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 10.57 113.37 1.20 2.19 16 2 O -0.37 -15.05 9.84 -57.47 -0.57 -15.62 16 3 C 0.50 25.04 7.86 70.14 0.55 25.59 16 4 O -0.55 -30.58 13.54 19.65 0.27 -30.31 16 5 C -0.30 -15.23 6.07 -18.48 -0.11 -15.34 16 6 C -0.03 -1.09 9.60 22.48 0.22 -0.87 16 7 C -0.24 -9.47 9.50 22.52 0.21 -9.25 16 8 C 0.04 1.70 5.86 -20.11 -0.12 1.58 16 9 C -0.21 -8.01 6.03 -20.33 -0.12 -8.14 16 10 C 0.04 1.53 11.39 85.53 0.97 2.51 16 11 N -0.29 -10.46 11.50 -56.42 -0.65 -11.10 16 12 N -0.36 -9.87 2.69 -347.19 -0.93 -10.80 16 13 C 0.13 2.33 5.70 86.38 0.49 2.82 16 14 C 0.12 1.84 1.15 -10.79 -0.01 1.82 16 15 C -0.17 -1.45 8.82 71.98 0.63 -0.81 16 16 C -0.17 -2.96 8.60 71.98 0.62 -2.34 16 17 O -0.57 -12.23 12.00 -148.98 -1.79 -14.02 16 18 C 0.07 2.09 10.80 83.86 0.91 2.99 16 19 C -0.18 -9.21 8.16 22.95 0.19 -9.02 16 20 C 0.13 7.14 5.67 -19.91 -0.11 7.02 16 21 C -0.45 -25.70 7.85 23.42 0.18 -25.51 16 22 H 0.08 4.95 5.96 -2.91 -0.02 4.93 16 23 C 0.04 1.84 5.26 85.36 0.45 2.29 16 24 N -0.80 -42.27 11.05 21.88 0.24 -42.03 16 25 Si 0.98 40.99 29.57 68.60 2.03 43.02 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 28 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.13 4.76 7.63 -2.91 -0.02 4.73 16 33 H 0.14 4.10 6.90 -2.91 -0.02 4.08 16 34 H 0.17 6.83 7.30 -2.91 -0.02 6.81 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.15 1.31 8.06 -2.39 -0.02 1.29 16 37 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.03 0.77 7.47 -2.38 -0.02 0.75 16 41 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.38 5.46 9.05 -74.06 -0.67 4.79 16 44 H 0.21 4.08 7.22 -2.91 -0.02 4.06 16 45 H 0.11 5.84 5.40 -2.91 -0.02 5.83 16 46 H 0.29 13.91 8.29 -92.72 -0.77 13.14 16 Total: -1.00 -76.73 386.94 5.10 -71.63 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.35 Total: 31.70 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 6.15 Total: -22.47 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.34 Total: -63.94 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -2.09 Total: -59.95 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -76.73 5.10 -71.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240197716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.027 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds