Wall clock time and date at job start Wed Apr 1 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99627 * 2 1 4 4 H 1.09001 * 109.98915 * 358.91294 * 3 2 1 5 5 O 1.43741 * 109.87583 * 237.82825 * 3 2 1 6 6 C 1.44424 * 107.00206 * 214.08974 * 5 3 2 7 7 C 1.54997 * 103.47265 * 40.01031 * 6 5 3 8 8 C 1.54102 * 109.87772 * 119.99952 * 3 2 1 9 9 H 1.08997 * 110.48605 * 2.77193 * 8 3 2 10 10 N 1.46503 * 110.59520 * 240.18304 * 8 3 2 11 11 C 1.34780 * 119.99487 * 158.71588 * 10 8 3 12 12 O 1.21360 * 120.00249 * 359.97438 * 11 10 8 13 13 C 1.49357 * 120.00084 * 179.97438 * 11 10 8 14 14 O 1.21382 * 119.99546 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00280 * 179.97438 * 13 11 10 16 16 C 1.39722 * 119.99979 * 175.37428 * 15 13 11 17 17 C 1.38931 * 120.08030 * 214.82366 * 16 15 13 18 18 C 1.38091 * 119.92380 * 179.77803 * 17 16 15 19 19 C 1.38290 * 120.07721 * 0.50097 * 18 17 16 20 20 C 1.50709 * 119.92518 * 179.72852 * 19 18 17 21 21 C 1.50698 * 109.46897 * 270.02443 * 20 19 18 22 22 H 1.08004 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.37870 * 119.99958 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99948 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00100 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47270 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47305 * 120.00248 * 25 23 21 28 28 H 1.48506 * 109.47096 * 239.99933 * 25 23 21 29 29 C 1.38300 * 120.15429 * 359.75254 * 19 18 17 30 30 C 1.38096 * 120.07298 * 359.97438 * 29 19 18 31 31 H 1.08000 * 120.00113 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00091 * 0.02562 * 1 2 3 33 33 H 1.07999 * 120.00091 * 179.97438 * 2 1 3 34 34 H 1.09004 * 110.60167 * 281.53180 * 6 5 3 35 35 H 1.08995 * 110.65883 * 158.51782 * 6 5 3 36 36 H 1.09000 * 110.91039 * 204.81505 * 7 6 5 37 37 H 1.08997 * 110.90689 * 81.23784 * 7 6 5 38 38 H 0.96998 * 120.00499 * 338.71530 * 10 8 3 39 39 H 0.96999 * 120.00263 * 355.38823 * 15 13 11 40 40 H 1.07999 * 120.03309 * 0.02562 * 17 16 15 41 41 H 1.08003 * 119.96187 * 180.23160 * 18 17 16 42 42 H 1.08998 * 109.46849 * 30.02190 * 20 19 18 43 43 H 1.09002 * 109.46967 * 150.02296 * 20 19 18 44 44 H 0.97003 * 120.00256 * 180.02562 * 24 23 21 45 45 H 1.07998 * 119.95932 * 179.97438 * 29 19 18 46 46 H 1.07991 * 120.03896 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3627 2.1399 -0.0194 5 8 2.9311 1.3686 -1.1442 6 6 4.1119 2.0947 -0.7391 7 6 4.3852 1.5693 0.6933 8 6 2.9529 1.3967 1.2551 9 1 2.8808 0.4807 1.8414 10 7 2.5781 2.5558 2.0689 11 6 2.9043 2.5951 3.3760 12 8 3.5079 1.6702 3.8789 13 6 2.5228 3.7770 4.2057 14 8 1.9194 4.7023 3.7026 15 7 2.8484 3.8161 5.5129 16 6 2.5779 4.9613 6.2663 17 6 3.4465 5.3502 7.2784 18 6 3.1784 6.4852 8.0180 19 6 2.0414 7.2286 7.7591 20 6 1.7490 8.4632 8.5724 21 6 0.9250 8.0876 9.7769 22 1 0.6410 7.0580 9.9373 23 6 0.5336 9.0584 10.6743 24 7 0.8789 10.3123 10.4787 25 14 -0.4884 8.5930 12.1670 26 1 -0.7420 7.1299 12.1567 27 1 0.2472 8.9587 13.4042 28 1 -1.7825 9.3205 12.1273 29 6 1.1718 6.8414 6.7558 30 6 1.4367 5.7107 6.0086 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.9164 3.1670 -0.7238 35 1 4.9493 1.8656 -1.3981 36 1 4.9458 2.3006 1.2756 37 1 4.9091 0.6140 0.6639 38 1 2.0953 3.2949 1.6671 39 1 3.2708 3.0493 5.9307 40 1 4.3325 4.7678 7.4838 41 1 3.8552 6.7902 8.8024 42 1 2.6863 8.9133 8.8993 43 1 1.1962 9.1776 7.9623 44 1 0.6038 10.9953 11.1102 45 1 0.2846 7.4241 6.5565 46 1 0.7570 5.4086 5.2256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262716246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:28 Heat of formation + Delta-G solvation = -63.790183 kcal Electronic energy + Delta-G solvation = -28472.900010 eV Core-core repulsion = 24328.191375 eV Total energy + Delta-G solvation = -4144.708635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34019 -40.33087 -39.08497 -38.03315 -35.63040 -34.79845 -34.31708 -33.05676 -31.40057 -30.62591 -30.40070 -28.70651 -27.11145 -25.13272 -23.51994 -23.16270 -22.49291 -21.77347 -21.03761 -20.44284 -20.04891 -18.95265 -17.64211 -17.05212 -16.82610 -16.62500 -16.32806 -16.13772 -15.70616 -15.24245 -15.03481 -14.77418 -14.43757 -14.32257 -14.22600 -13.81720 -13.64401 -13.18145 -13.02658 -12.94908 -12.68551 -12.59499 -12.12508 -11.95683 -11.90305 -11.72489 -11.60641 -11.42339 -11.32567 -10.88782 -10.61527 -10.44704 -10.38721 -10.17747 -10.11356 -9.85846 -9.65886 -9.47710 -9.33601 -8.45720 -8.38525 -7.53548 -6.06669 -4.10866 0.98449 1.61039 1.85975 1.96162 2.08548 2.94760 3.24285 3.27731 3.35581 3.40426 3.53268 3.91481 3.98672 4.14286 4.30546 4.33442 4.43306 4.50046 4.63152 4.67174 4.86322 5.13702 5.21033 5.27315 5.28852 5.34603 5.37803 5.42438 5.46617 5.72102 5.76091 5.91852 5.98361 6.03479 6.10577 6.11628 6.28738 6.47466 6.55622 6.70429 6.74497 7.07612 7.11148 7.19230 7.41814 7.46706 7.59664 7.80080 7.80966 7.89083 8.28479 8.94687 9.53213 11.02985 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.001767 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.727721 B =15842.560727 C =16158.073794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.159 4.159 3 C 0.102 3.898 4 H 0.081 0.919 5 O -0.363 6.363 6 C 0.043 3.957 7 C -0.165 4.165 8 C 0.117 3.883 9 H 0.112 0.888 10 N -0.695 5.695 11 C 0.515 3.485 12 O -0.514 6.514 13 C 0.501 3.499 14 O -0.502 6.502 15 N -0.632 5.632 16 C 0.091 3.909 17 C -0.134 4.134 18 C -0.109 4.109 19 C -0.035 4.035 20 C 0.046 3.954 21 C -0.511 4.511 22 H 0.058 0.942 23 C 0.057 3.943 24 N -0.893 5.893 25 Si 0.895 3.105 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.283 1.283 29 C -0.110 4.110 30 C -0.113 4.113 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.414 0.586 39 H 0.418 0.582 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.262 0.738 45 H 0.124 0.876 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 -19.848 -21.769 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.043 3.957 4 H 0.099 0.901 5 O -0.281 6.281 6 C -0.034 4.034 7 C -0.204 4.204 8 C 0.012 3.988 9 H 0.130 0.870 10 N -0.350 5.350 11 C 0.296 3.704 12 O -0.389 6.389 13 C 0.282 3.718 14 O -0.377 6.377 15 N -0.278 5.278 16 C -0.001 4.001 17 C -0.154 4.154 18 C -0.127 4.127 19 C -0.036 4.036 20 C 0.009 3.991 21 C -0.549 4.549 22 H 0.076 0.924 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.723 3.277 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.209 1.209 29 C -0.129 4.129 30 C -0.133 4.133 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.252 0.748 39 H 0.255 0.745 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.361 -19.797 -21.936 30.031 hybrid contribution -0.485 -0.126 1.120 1.227 sum 4.876 -19.923 -20.816 29.224 Atomic orbital electron populations 1.23976 0.95636 1.02663 0.97763 1.22741 0.95828 0.97242 1.01971 1.22036 0.92063 0.96899 0.84672 0.90130 1.88995 1.30300 1.76412 1.32437 1.23669 0.88332 0.96296 0.95056 1.23582 0.96442 1.03614 0.96751 1.22444 0.93979 0.90139 0.92242 0.86992 1.45792 1.58076 1.22283 1.08831 1.20122 0.80069 0.87236 0.82968 1.90781 1.38955 1.37136 1.72022 1.20015 0.81313 0.87335 0.83108 1.90795 1.38024 1.36953 1.71897 1.42983 1.59259 1.17267 1.08263 1.17522 0.96628 0.89816 0.96102 1.20795 0.98520 0.98390 0.97667 1.20916 0.98152 0.94348 0.99329 1.20797 0.91952 0.97748 0.93073 1.18386 0.97722 0.89206 0.93755 1.21090 1.32844 0.94289 1.06726 0.92364 1.25019 0.96233 0.94944 0.98198 1.69968 1.46038 1.00396 1.36834 0.86478 0.79979 0.78693 0.82560 1.19663 1.20948 1.20934 1.21028 0.99787 0.96436 0.95603 1.21119 0.95526 0.96189 1.00450 0.87474 0.88133 0.86301 0.91650 0.88246 0.89308 0.89003 0.74836 0.74532 0.86462 0.85720 0.95185 0.95171 0.92870 0.85839 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 14.32 29.02 0.42 -0.51 16 2 C -0.16 -1.02 8.94 -36.02 -0.32 -1.35 16 3 C 0.10 0.69 3.58 -27.31 -0.10 0.60 16 4 H 0.08 0.51 7.28 -51.93 -0.38 0.13 16 5 O -0.36 -2.92 11.17 -35.23 -0.39 -3.31 16 6 C 0.04 0.25 7.72 38.21 0.30 0.55 16 7 C -0.17 -1.04 6.87 -24.72 -0.17 -1.21 16 8 C 0.12 0.83 2.96 -66.40 -0.20 0.64 16 9 H 0.11 0.88 7.21 -51.93 -0.37 0.51 16 10 N -0.70 -5.67 5.11 -52.78 -0.27 -5.94 16 11 C 0.52 5.50 7.88 -11.63 -0.09 5.41 16 12 O -0.51 -6.28 16.19 5.49 0.09 -6.19 16 13 C 0.50 6.36 7.73 -11.63 -0.09 6.27 16 14 O -0.50 -7.39 13.91 5.47 0.08 -7.31 16 15 N -0.63 -8.15 5.32 -10.29 -0.05 -8.20 16 16 C 0.09 1.45 6.30 -83.75 -0.53 0.92 16 17 C -0.13 -2.12 9.97 -39.38 -0.39 -2.51 16 18 C -0.11 -2.03 9.69 -39.62 -0.38 -2.41 16 19 C -0.04 -0.75 5.07 -104.58 -0.53 -1.28 16 20 C 0.05 1.16 5.10 -29.03 -0.15 1.01 16 21 C -0.51 -14.08 9.09 -34.44 -0.31 -14.39 16 22 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 25 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 30 C -0.11 -1.98 8.70 -39.37 -0.34 -2.33 16 31 H 0.11 0.48 8.06 -52.49 -0.42 0.05 16 32 H 0.10 0.53 7.85 -52.49 -0.41 0.12 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.41 3.01 7.76 -40.82 -0.32 2.69 16 39 H 0.42 4.49 8.30 -40.82 -0.34 4.15 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 46 H 0.13 2.17 6.22 -52.49 -0.33 1.85 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -32.03 394.53 -8.60 -40.62 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.33 Total: 5.06 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.38 Total: -11.60 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.41 Total: -39.51 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.23 Total: -16.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.03 -8.60 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262716246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.169 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds