Wall clock time and date at job start Wed Apr 1 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46740 * 2 1 4 4 C 1.38260 * 120.00024 * 94.07972 * 3 2 1 5 5 C 1.38213 * 120.00125 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99759 * 359.94921 * 5 4 3 7 7 C 1.38208 * 120.00359 * 0.02562 * 6 5 4 8 8 C 1.38215 * 120.00123 * 273.79886 * 3 2 1 9 9 C 1.50701 * 119.99803 * 0.02562 * 8 3 2 10 10 H 1.09000 * 109.47521 * 34.45044 * 9 8 3 11 11 C 1.53001 * 109.46902 * 274.44790 * 9 8 3 12 12 N 1.46497 * 109.47185 * 184.08248 * 11 9 8 13 13 C 1.34781 * 119.99846 * 180.02562 * 12 11 9 14 14 O 1.21276 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99788 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47098 * 180.02562 * 15 13 12 17 17 F 1.39903 * 109.47251 * 59.99788 * 16 15 13 18 18 F 1.39904 * 109.46964 * 179.97438 * 16 15 13 19 19 F 1.39896 * 109.47220 * 299.99655 * 16 15 13 20 20 N 1.46501 * 109.47173 * 154.45340 * 9 8 3 21 21 C 1.36937 * 119.99949 * 274.99855 * 20 9 8 22 22 H 1.08006 * 119.99758 * 359.97438 * 21 20 9 23 23 C 1.38803 * 120.00062 * 180.02562 * 21 20 9 24 24 N 1.31617 * 120.00319 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47262 * 60.00006 * 25 23 21 27 27 H 1.48501 * 109.47053 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47086 * 299.99769 * 25 23 21 29 29 H 1.09003 * 109.46968 * 174.59543 * 1 2 3 30 30 H 1.09003 * 109.47466 * 294.59442 * 1 2 3 31 31 H 1.08998 * 109.47408 * 54.59594 * 1 2 3 32 32 H 1.09003 * 109.47469 * 119.99653 * 2 1 3 33 33 H 1.08999 * 109.47455 * 240.00637 * 2 1 3 34 34 H 1.07997 * 119.99844 * 359.97230 * 4 3 2 35 35 H 1.07993 * 120.00146 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.99838 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.00279 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47128 * 304.08945 * 11 9 8 39 39 H 1.09004 * 109.47039 * 64.08198 * 11 9 8 40 40 H 0.97003 * 120.00060 * 0.02562 * 12 11 9 41 41 H 1.09009 * 109.47023 * 300.00014 * 15 13 12 42 42 H 1.09004 * 109.47571 * 59.99713 * 15 13 12 43 43 H 0.96997 * 120.00151 * 94.99518 * 20 9 8 44 44 H 0.97004 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3429 2.0443 1.1943 5 6 2.8030 3.3476 1.1944 6 6 2.9536 4.0275 0.0000 7 6 2.6435 3.4043 -1.1940 8 6 2.1878 2.0989 -1.1943 9 6 1.8546 1.4175 -2.4965 10 1 1.0091 0.7455 -2.3491 11 6 3.0658 0.6155 -2.9770 12 7 2.7762 0.0327 -4.2894 13 6 3.7044 -0.7205 -4.9119 14 8 4.7792 -0.9162 -4.3853 15 6 3.4067 -1.3196 -6.2623 16 6 4.6174 -2.1227 -6.7421 17 9 4.8903 -3.1459 -5.8279 18 9 4.3407 -2.6793 -7.9955 19 9 5.7278 -1.2776 -6.8415 20 7 1.5073 2.4261 -3.5007 21 6 0.2268 2.9055 -3.5752 22 1 -0.5273 2.5396 -2.8940 23 6 -0.1024 3.8608 -4.5270 24 7 0.8164 4.3063 -5.3574 25 14 -1.8495 4.5141 -4.6291 26 1 -2.2157 5.1520 -3.3390 27 1 -1.9396 5.5176 -5.7200 28 1 -2.7817 3.3927 -4.9091 29 1 -0.3633 -1.0231 -0.0968 30 1 -0.3634 0.4277 0.9344 31 1 -0.3634 0.5953 -0.8376 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 2.2252 1.5131 2.1273 35 1 3.0453 3.8346 2.1273 36 1 3.3135 5.0458 0.0000 37 1 2.7615 3.9353 -2.1269 38 1 3.9303 1.2748 -3.0548 39 1 3.2796 -0.1814 -2.2647 40 1 1.9163 0.1889 -4.7104 41 1 2.5417 -1.9784 -6.1848 42 1 3.1936 -0.5224 -6.9745 43 1 2.1845 2.7545 -4.1126 44 1 0.5864 4.9741 -6.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271436465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:52 Heat of formation + Delta-G solvation = -182.426825 kcal Electronic energy + Delta-G solvation = -30733.663105 eV Core-core repulsion = 26041.953259 eV Total energy + Delta-G solvation = -4691.709846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.06253 -48.58304 -48.52648 -41.04915 -40.35302 -37.44131 -35.31909 -34.97219 -33.67733 -32.69973 -31.12405 -30.23221 -28.91239 -25.93693 -25.05117 -24.63186 -23.89594 -21.86450 -21.69104 -21.02988 -19.74236 -19.53780 -19.29345 -18.54201 -17.76555 -17.30267 -17.10511 -16.68226 -16.43967 -16.17246 -15.67843 -15.49273 -15.40338 -15.21140 -14.95829 -14.86034 -14.70687 -14.66104 -14.57195 -14.46087 -14.38477 -14.16844 -13.94279 -13.74721 -13.33196 -12.97727 -12.93929 -12.86714 -12.77428 -12.59421 -12.36847 -12.10763 -12.05825 -11.81120 -11.59748 -11.41560 -11.20666 -10.91613 -10.11849 -9.54715 -9.36220 -9.00575 -7.89696 -5.18618 0.57969 0.66837 1.46252 1.50116 1.52626 1.56871 1.58763 2.14638 2.58128 2.74252 2.98895 3.08851 3.17785 3.44965 3.76809 3.82326 4.00884 4.04930 4.10309 4.17731 4.28776 4.30303 4.35097 4.38541 4.44146 4.60188 4.64305 4.77946 4.82816 4.86404 5.03004 5.14174 5.19355 5.27079 5.38695 5.39720 5.48999 5.59113 5.73334 5.81621 5.98904 6.27971 6.32319 6.44060 7.09207 7.39172 8.06423 8.33291 9.31847 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003819 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.534971 B = 7330.625935 C = 9366.764150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.087 4.087 4 C -0.128 4.128 5 C -0.126 4.126 6 C -0.146 4.146 7 C -0.105 4.105 8 C -0.103 4.103 9 C 0.205 3.795 10 H 0.078 0.922 11 C 0.131 3.869 12 N -0.700 5.700 13 C 0.513 3.487 14 O -0.573 6.573 15 C -0.186 4.186 16 C 0.470 3.530 17 F -0.186 7.186 18 F -0.178 7.178 19 F -0.190 7.190 20 N -0.717 5.717 21 C -0.225 4.225 22 H 0.072 0.928 23 C -0.059 4.059 24 N -0.961 5.961 25 Si 0.956 3.044 26 H -0.290 1.290 27 H -0.302 1.302 28 H -0.275 1.275 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.418 0.582 41 H 0.175 0.825 42 H 0.162 0.838 43 H 0.375 0.625 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -12.241 5.633 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.164 4.164 7 C -0.124 4.124 8 C -0.106 4.106 9 C 0.096 3.904 10 H 0.096 0.904 11 C 0.006 3.994 12 N -0.351 5.351 13 C 0.299 3.701 14 O -0.453 6.453 15 C -0.226 4.226 16 C 0.416 3.584 17 F -0.167 7.167 18 F -0.159 7.159 19 F -0.172 7.172 20 N -0.357 5.357 21 C -0.357 4.357 22 H 0.089 0.911 23 C -0.252 4.252 24 N -0.611 5.611 25 Si 0.787 3.213 26 H -0.217 1.217 27 H -0.229 1.229 28 H -0.201 1.201 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.255 0.745 41 H 0.193 0.807 42 H 0.180 0.820 43 H 0.208 0.792 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.564 -12.370 6.006 13.988 hybrid contribution -0.705 1.298 -0.872 1.715 sum 1.859 -11.072 5.134 12.345 Atomic orbital electron populations 1.21717 0.94525 1.02212 1.01619 1.20610 0.96353 0.91605 1.03490 1.20024 0.99170 0.97199 0.92370 1.21262 1.00194 0.95296 0.97878 1.21336 0.99955 0.95174 0.97970 1.21304 1.01781 1.00365 0.92913 1.21023 0.98135 0.95315 0.97908 1.20734 0.98838 0.94905 0.96135 1.19546 0.94891 0.89832 0.86161 0.90402 1.21460 0.97251 0.96540 0.84154 1.45769 1.18781 1.50141 1.20437 1.20266 0.84006 0.78925 0.86909 1.90782 1.24994 1.61626 1.67886 1.23017 0.98035 1.04332 0.97235 1.20012 0.84987 0.78461 0.74973 1.93188 1.94806 1.61614 1.67103 1.93204 1.93595 1.86402 1.42743 1.93191 1.56963 1.71089 1.95938 1.42462 1.08878 1.46871 1.37490 1.19332 0.87667 1.16609 1.12045 0.91050 1.25263 1.00167 1.00646 0.99127 1.69771 1.33701 1.34489 1.23153 0.85479 0.81627 0.77887 0.76297 1.21674 1.22871 1.20112 0.90799 0.92446 0.94265 0.89303 0.91062 0.83890 0.84057 0.85962 0.88434 0.93500 0.90019 0.74484 0.80700 0.82011 0.79198 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.67 71.98 0.70 -2.46 16 2 C -0.08 -1.87 5.38 29.85 0.16 -1.71 16 3 C -0.09 -2.47 5.13 -19.86 -0.10 -2.57 16 4 C -0.13 -3.28 9.69 22.27 0.22 -3.06 16 5 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 6 C -0.15 -4.64 10.05 22.27 0.22 -4.42 16 7 C -0.11 -3.95 9.32 22.27 0.21 -3.74 16 8 C -0.10 -3.51 5.02 -19.86 -0.10 -3.61 16 9 C 0.21 6.97 1.96 44.25 0.09 7.06 16 10 H 0.08 2.56 5.71 -2.39 -0.01 2.54 16 11 C 0.13 4.07 5.07 86.38 0.44 4.51 16 12 N -0.70 -19.46 5.39 -463.06 -2.50 -21.96 16 13 C 0.51 14.26 7.60 87.66 0.67 14.93 16 14 O -0.57 -20.51 14.83 -3.02 -0.04 -20.55 16 15 C -0.19 -3.50 5.75 29.85 0.17 -3.33 16 16 C 0.47 11.10 2.89 71.98 0.21 11.31 16 17 F -0.19 -4.99 16.40 44.97 0.74 -4.25 16 18 F -0.18 -3.78 17.32 44.97 0.78 -3.00 16 19 F -0.19 -5.55 16.40 44.97 0.74 -4.81 16 20 N -0.72 -30.53 3.35 -326.50 -1.09 -31.62 16 21 C -0.22 -10.88 9.92 84.03 0.83 -10.05 16 22 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 23 C -0.06 -3.05 5.50 84.86 0.47 -2.59 16 24 N -0.96 -53.53 13.06 21.65 0.28 -53.24 16 25 Si 0.96 43.01 29.55 68.60 2.03 45.03 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.05 7.06 -2.39 -0.02 1.04 16 32 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.07 1.61 5.59 -2.39 -0.01 1.59 16 34 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.12 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.10 4.24 7.27 -2.91 -0.02 4.22 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.37 6.81 -2.38 -0.02 2.35 16 40 H 0.42 11.03 8.17 -92.71 -0.76 10.28 16 41 H 0.18 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.16 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.38 17.75 7.80 -92.71 -0.72 17.02 16 44 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -64.36 378.10 4.90 -59.46 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.42 Total: 37.81 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 4.40 Total: -2.87 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.31 Total: -106.82 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 2.25 Total: -12.06 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.36 4.90 -59.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271436465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.968 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds