Wall clock time and date at job start Wed Apr 1 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46891 * 2 1 4 4 N 1.46499 * 109.46903 * 120.00181 * 2 1 3 5 5 C 1.46500 * 120.00104 * 294.46167 * 4 2 1 6 6 C 1.53004 * 109.46956 * 270.00101 * 5 4 2 7 7 N 1.46500 * 109.46956 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99984 * 270.00330 * 7 6 5 9 9 C 1.36938 * 119.99405 * 89.99818 * 7 6 5 10 10 H 1.07992 * 120.00670 * 21.11316 * 9 7 6 11 11 C 1.38813 * 119.99510 * 201.09956 * 9 7 6 12 12 N 1.31622 * 120.00071 * 12.75889 * 11 9 7 13 13 Si 1.86802 * 119.99941 * 192.75340 * 11 9 7 14 14 H 1.48504 * 109.47148 * 90.00478 * 13 11 9 15 15 H 1.48502 * 109.46959 * 210.00159 * 13 11 9 16 16 H 1.48491 * 109.47373 * 330.00455 * 13 11 9 17 17 C 1.34779 * 119.99583 * 114.46226 * 4 2 1 18 18 O 1.21590 * 119.99859 * 183.40508 * 17 4 2 19 19 C 1.47569 * 120.00283 * 3.41220 * 17 4 2 20 20 C 1.39761 * 120.12728 * 305.54688 * 19 17 4 21 21 C 1.37924 * 119.87524 * 180.02562 * 20 19 17 22 22 F 1.35091 * 119.92794 * 179.97438 * 21 20 19 23 23 C 1.38946 * 120.14352 * 359.75380 * 21 20 19 24 24 F 1.35097 * 119.86672 * 180.27539 * 23 21 20 25 25 C 1.38455 * 120.26860 * 0.50227 * 23 21 20 26 26 C 1.38208 * 120.11534 * 359.49694 * 25 23 21 27 27 F 1.35106 * 120.07031 * 180.27419 * 26 25 23 28 28 H 1.08998 * 109.47070 * 299.99883 * 1 2 3 29 29 H 1.09009 * 109.47415 * 59.99514 * 1 2 3 30 30 H 1.09003 * 109.47337 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46865 * 240.00436 * 2 1 3 32 32 H 1.08998 * 109.46480 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47498 * 300.00160 * 3 2 1 34 34 H 1.09004 * 109.46516 * 60.00346 * 3 2 1 35 35 H 1.08996 * 109.47089 * 30.00010 * 5 4 2 36 36 H 1.08997 * 109.46737 * 150.00195 * 5 4 2 37 37 H 1.08996 * 109.47147 * 299.99873 * 6 5 4 38 38 H 1.08998 * 109.46609 * 60.00234 * 6 5 4 39 39 H 1.08999 * 109.47255 * 95.08072 * 8 7 6 40 40 H 1.09003 * 109.46972 * 215.07750 * 8 7 6 41 41 H 1.09001 * 109.47119 * 335.07657 * 8 7 6 42 42 H 0.97004 * 119.99880 * 179.97438 * 12 11 9 43 43 H 1.07997 * 120.06545 * 0.02562 * 20 19 17 44 44 H 1.07999 * 119.93555 * 179.76896 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7671 -0.1234 2.5233 6 6 2.9177 0.8101 2.9050 7 7 2.6662 1.3778 4.2319 8 6 1.9268 2.6357 4.3624 9 6 3.1223 0.7324 5.3503 10 1 3.9319 0.0221 5.2715 11 6 2.5440 0.9915 6.5854 12 7 1.4088 1.6541 6.6546 13 14 3.3769 0.3997 8.1492 14 1 4.3059 1.4481 8.6425 15 1 2.3481 0.1234 9.1838 16 1 4.1389 -0.8426 7.8645 17 6 2.6986 -1.8479 1.0755 18 8 3.0500 -2.4530 2.0699 19 6 3.0171 -2.3805 -0.2633 20 6 1.9984 -2.5815 -1.1989 21 6 2.3019 -3.0801 -2.4485 22 9 1.3180 -3.2754 -3.3534 23 6 3.6179 -3.3777 -2.7803 24 9 3.9096 -3.8605 -4.0079 25 6 4.6311 -3.1858 -1.8563 26 6 4.3393 -2.6868 -0.6009 27 9 5.3294 -2.4947 0.2981 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 0.8333 0.4384 2.5075 36 1 1.6945 -0.9284 3.2546 37 1 3.8515 0.2483 2.9208 38 1 2.9902 1.6151 2.1736 39 1 0.8734 2.4211 4.5422 40 1 2.3287 3.2084 5.1982 41 1 2.0282 3.2137 3.4438 42 1 1.0046 1.8348 7.5177 43 1 0.9755 -2.3470 -0.9438 44 1 5.6517 -3.4224 -2.1187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278917464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:33 Heat of formation + Delta-G solvation = -123.786364 kcal Electronic energy + Delta-G solvation = -31165.672821 eV Core-core repulsion = 26476.505816 eV Total energy + Delta-G solvation = -4689.167005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.72260 -50.27835 -49.78324 -41.67739 -39.41582 -38.19167 -37.21348 -33.83404 -32.78899 -32.55949 -31.45380 -29.76541 -28.14442 -27.90739 -26.01545 -25.05436 -24.19662 -22.92766 -22.39197 -20.60748 -19.47868 -19.33393 -18.93844 -18.71307 -18.03314 -17.64810 -17.22343 -16.98961 -16.72108 -16.52326 -16.20145 -16.11823 -15.87416 -15.65752 -15.58858 -15.28288 -15.05171 -14.84988 -14.61950 -14.44221 -14.09055 -13.87711 -13.58391 -13.31641 -13.21605 -13.04812 -12.94982 -12.82333 -12.78328 -12.71181 -12.39632 -12.18185 -12.07856 -12.01301 -11.87631 -11.46677 -11.18707 -10.69010 -10.38619 -9.98862 -9.85445 -8.80690 -7.86333 -5.32760 -0.79165 -0.47439 1.28866 1.43498 1.44105 1.53631 1.67558 1.94030 2.32328 2.49592 2.68845 2.99146 3.04635 3.24844 3.27989 3.64565 3.70895 3.83921 4.06911 4.11306 4.18937 4.24976 4.26576 4.35125 4.53106 4.53332 4.58897 4.61583 4.70965 4.79621 4.84385 4.92068 4.96672 5.01529 5.10675 5.30188 5.32451 5.38702 5.40604 5.50527 5.61642 5.72897 6.27086 6.31756 6.94704 7.13776 7.84226 8.24237 9.16310 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003023 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.034540 B = 9258.704840 C =10163.040685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 C -0.165 4.165 4 N -0.585 5.585 5 C 0.114 3.886 6 C 0.144 3.856 7 N -0.614 5.614 8 C 0.178 3.822 9 C -0.265 4.265 10 H 0.057 0.943 11 C -0.046 4.046 12 N -0.932 5.932 13 Si 0.964 3.036 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.549 3.451 18 O -0.568 6.568 19 C -0.147 4.147 20 C -0.058 4.058 21 C 0.066 3.934 22 F -0.118 7.118 23 C 0.125 3.875 24 F -0.114 7.114 25 C -0.146 4.146 26 C 0.154 3.846 27 F -0.127 7.127 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.009 0.991 40 H 0.017 0.983 41 H 0.036 0.964 42 H 0.250 0.750 43 H 0.180 0.820 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -5.613 -26.054 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 C -0.222 4.222 4 N -0.317 5.317 5 C -0.011 4.011 6 C 0.017 3.983 7 N -0.338 5.338 8 C 0.033 3.967 9 C -0.395 4.395 10 H 0.074 0.926 11 C -0.241 4.241 12 N -0.579 5.579 13 Si 0.792 3.208 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.204 1.204 17 C 0.337 3.663 18 O -0.447 6.447 19 C -0.151 4.151 20 C -0.077 4.077 21 C 0.046 3.954 22 F -0.096 7.096 23 C 0.104 3.896 24 F -0.092 7.092 25 C -0.165 4.165 26 C 0.134 3.866 27 F -0.105 7.105 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.036 0.964 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.197 0.803 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.226 -5.845 -25.432 26.096 hybrid contribution 0.356 -0.474 1.393 1.514 sum 0.581 -6.320 -24.039 24.863 Atomic orbital electron populations 1.22237 0.93143 1.02974 1.03876 1.21783 0.95905 0.94507 0.86740 1.22279 1.01407 0.94815 1.03715 1.48235 1.53423 1.21606 1.08393 1.22023 1.00289 0.96912 0.81882 1.21349 0.95096 0.95302 0.86531 1.44155 1.65280 1.22916 1.01440 1.20606 0.94542 0.85340 0.96184 1.19423 1.11836 1.21262 0.87017 0.92562 1.25652 0.96678 1.01008 1.00799 1.70204 1.17903 1.45889 1.23871 0.85320 0.77608 0.78076 0.79788 1.20785 1.21572 1.20376 1.18374 0.78426 0.81287 0.88236 1.90874 1.54026 1.59815 1.40012 1.19728 0.93458 1.06746 0.95169 1.21127 1.01022 0.96221 0.89352 1.17283 0.84170 1.05364 0.88615 1.91591 1.59820 1.92914 1.65310 1.17361 0.91470 0.98963 0.81794 1.91604 1.93827 1.84867 1.38887 1.21017 1.02545 1.02717 0.90232 1.17397 0.83609 0.98176 0.87433 1.91605 1.59948 1.92232 1.66739 0.93006 0.88091 0.91917 0.87015 0.92720 0.88288 0.92702 0.90035 0.94005 0.96107 0.90670 0.97267 0.96382 0.94567 0.94103 0.80295 0.78954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.02 71.98 0.65 -1.93 16 2 C 0.11 2.13 2.49 44.99 0.11 2.24 16 3 C -0.16 -3.00 7.93 71.98 0.57 -2.43 16 4 N -0.59 -17.15 2.40 -801.51 -1.92 -19.07 16 5 C 0.11 4.37 5.03 86.38 0.43 4.80 16 6 C 0.14 6.09 5.73 86.38 0.50 6.59 16 7 N -0.61 -31.68 2.93 -726.95 -2.13 -33.81 16 8 C 0.18 8.65 9.01 127.77 1.15 9.80 16 9 C -0.27 -15.45 9.68 84.03 0.81 -14.63 16 10 H 0.06 3.37 7.85 -2.91 -0.02 3.34 16 11 C -0.05 -2.66 5.11 84.86 0.43 -2.23 16 12 N -0.93 -55.52 10.58 21.65 0.23 -55.29 16 13 Si 0.96 47.24 29.57 68.60 2.03 49.27 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 17 C 0.55 17.83 6.89 86.71 0.60 18.43 16 18 O -0.57 -24.86 16.43 -4.00 -0.07 -24.92 16 19 C -0.15 -3.35 4.84 -20.05 -0.10 -3.44 16 20 C -0.06 -0.92 7.38 22.56 0.17 -0.75 16 21 C 0.07 0.95 7.29 22.37 0.16 1.12 16 22 F -0.12 -1.78 17.17 44.97 0.77 -1.00 16 23 C 0.12 1.75 7.31 22.49 0.16 1.91 16 24 F -0.11 -1.65 17.17 44.97 0.77 -0.87 16 25 C -0.15 -2.06 9.99 22.31 0.22 -1.84 16 26 C 0.15 3.32 7.27 22.66 0.16 3.49 16 27 F -0.13 -3.54 16.66 44.97 0.75 -2.79 16 28 H 0.05 1.03 6.89 -2.39 -0.02 1.01 16 29 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 0.92 7.21 -2.39 -0.02 0.91 16 31 H 0.11 1.63 4.63 -2.38 -0.01 1.62 16 32 H 0.05 1.08 7.93 -2.39 -0.02 1.06 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.22 6.38 -2.38 -0.02 1.21 16 35 H 0.08 2.97 6.71 -2.39 -0.02 2.95 16 36 H 0.04 1.99 7.38 -2.39 -0.02 1.98 16 37 H 0.02 0.96 8.03 -2.39 -0.02 0.95 16 38 H 0.08 2.69 5.12 -2.39 -0.01 2.67 16 39 H 0.01 0.47 7.39 -2.39 -0.02 0.46 16 40 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 41 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.18 2.22 6.26 -2.91 -0.02 2.21 16 44 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -73.59 368.66 7.53 -66.06 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.05 Total: 1.30 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.04 Total: 21.13 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -3.82 Total: -108.16 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.07 Total: -24.92 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 2.29 Total: -4.67 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -73.59 7.53 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278917464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.726 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds