Wall clock time and date at job start Wed Apr 1 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47306 * 18.85266 * 3 2 1 5 5 N 1.46508 * 109.46910 * 258.85457 * 3 2 1 6 6 C 1.34780 * 119.99506 * 84.99912 * 5 3 2 7 7 O 1.21580 * 120.00429 * 0.02562 * 6 5 3 8 8 N 1.34782 * 119.99261 * 179.97438 * 6 5 3 9 9 C 1.46508 * 119.99540 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46920 * 180.02562 * 9 8 6 11 11 C 1.38321 * 119.96060 * 269.97622 * 10 9 8 12 12 C 1.38283 * 120.13571 * 180.02562 * 11 10 9 13 13 C 1.38121 * 120.06746 * 359.73899 * 12 11 10 14 14 C 1.38854 * 119.92935 * 0.51682 * 13 12 11 15 15 O 1.35760 * 120.06925 * 179.76518 * 14 13 12 16 16 C 1.34826 * 116.99779 * 5.23455 * 15 14 13 17 17 H 1.08001 * 120.00203 * 354.92333 * 16 15 14 18 18 C 1.38655 * 119.99963 * 174.92364 * 16 15 14 19 19 N 1.31558 * 120.00045 * 359.71911 * 18 16 15 20 20 Si 1.86802 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47243 * 119.99871 * 20 18 16 23 23 H 1.48499 * 109.46967 * 239.99739 * 20 18 16 24 24 C 1.38077 * 119.96620 * 89.99858 * 10 9 8 25 25 C 1.52995 * 109.47402 * 138.85816 * 3 2 1 26 26 H 1.09005 * 110.32878 * 302.25182 * 25 3 2 27 27 C 1.54469 * 110.37634 * 179.97438 * 25 3 2 28 28 C 1.54508 * 104.06551 * 217.18774 * 27 25 3 29 29 C 1.54481 * 104.06142 * 359.97438 * 28 27 25 30 30 O 1.44425 * 110.37118 * 64.61213 * 25 3 2 31 31 H 4.18746 * 15.03960 * 0.02562 * 4 2 1 32 32 H 0.96997 * 119.99814 * 264.99873 * 5 3 2 33 33 H 0.96997 * 120.00059 * 0.02562 * 8 6 5 34 34 H 1.08990 * 109.46993 * 59.99773 * 9 8 6 35 35 H 1.09003 * 109.46653 * 299.99593 * 9 8 6 36 36 H 1.08002 * 119.93428 * 0.04223 * 11 10 9 37 37 H 1.08002 * 119.96404 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.03342 * 180.25241 * 13 12 11 39 39 H 0.97001 * 119.99741 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.03411 * 359.97438 * 24 10 9 41 41 H 1.09002 * 110.51240 * 335.83787 * 27 25 3 42 42 H 1.09004 * 110.51188 * 98.40178 * 27 25 3 43 43 H 1.09007 * 110.51016 * 118.64375 * 28 27 25 44 44 H 1.09000 * 110.50779 * 241.35261 * 28 27 25 45 45 H 1.08997 * 110.37132 * 142.81040 * 29 28 27 46 46 H 1.09002 * 110.37074 * 265.14553 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9717 -0.3321 5 7 3.1342 0.2679 1.3553 6 6 3.2632 -0.7436 2.2366 7 8 2.9750 -1.8778 1.9069 8 7 3.7129 -0.4978 3.4832 9 6 3.8537 -1.5974 4.4411 10 6 4.3699 -1.0595 5.7509 11 6 5.7321 -0.9918 5.9811 12 6 6.2096 -0.4993 7.1818 13 6 5.3271 -0.0684 8.1530 14 6 3.9590 -0.1401 7.9270 15 8 3.0890 0.2782 8.8815 16 6 3.6167 0.8525 9.9813 17 1 4.6883 0.8884 10.1104 18 6 2.7835 1.3970 10.9466 19 7 1.4782 1.3581 10.7868 20 14 3.5146 2.1933 12.4700 21 1 4.9962 2.1135 12.4077 22 1 3.0973 3.6171 12.5330 23 1 3.0316 1.4819 13.6807 24 6 3.4824 -0.6352 6.7199 25 6 3.1555 1.0871 -0.9490 26 1 2.7676 0.9241 -1.9545 27 6 4.7000 1.1066 -0.9645 28 6 5.0556 2.6064 -1.0718 29 6 3.6838 3.3156 -1.1090 30 8 2.7753 2.3944 -0.4670 31 1 -1.0501 -0.0007 -0.0008 32 1 3.3644 1.1727 1.6182 33 1 3.9431 0.4070 3.7461 34 1 4.5551 -2.3335 4.0486 35 1 2.8834 -2.0680 4.5992 36 1 6.4242 -1.3239 5.2214 37 1 7.2738 -0.4473 7.3585 38 1 5.7008 0.3198 9.0890 39 1 0.8954 1.7387 11.4623 40 1 2.4190 -0.6883 6.5395 41 1 5.0966 0.6851 -0.0408 42 1 5.0802 0.5591 -1.8270 43 1 5.6280 2.9264 -0.2010 44 1 5.6116 2.8024 -1.9886 45 1 3.7264 4.2536 -0.5554 46 1 3.3777 3.4959 -2.1396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320381197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:38 Heat of formation + Delta-G solvation = -41.030817 kcal Electronic energy + Delta-G solvation = -28696.773036 eV Core-core repulsion = 24553.051321 eV Total energy + Delta-G solvation = -4143.721715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48267 -40.82649 -40.21192 -38.51567 -36.63896 -35.68225 -34.29408 -33.62309 -33.00247 -32.14079 -30.97959 -30.54051 -27.67852 -27.15608 -26.22635 -23.28929 -23.16279 -22.51979 -22.11217 -21.95266 -19.99706 -19.47024 -19.31810 -18.72856 -17.80797 -17.10793 -16.82459 -16.70678 -16.62509 -16.28646 -16.15868 -16.09125 -15.56416 -15.48022 -15.30747 -14.91254 -14.76364 -14.56752 -14.31893 -13.91450 -13.69637 -13.64756 -13.34684 -13.03976 -12.64630 -12.57674 -12.52734 -12.33583 -12.26702 -12.17964 -12.08288 -11.73397 -11.54110 -11.34364 -11.19978 -11.15409 -10.82408 -10.77998 -10.55202 -9.94469 -9.77052 -9.03250 -8.47325 -6.15910 0.35872 0.70947 1.35050 1.35883 1.44211 1.53846 1.84387 2.07575 2.15718 2.18176 2.81908 2.85780 3.12863 3.28463 3.37871 3.40699 3.66433 3.82926 3.87248 4.02217 4.09934 4.18238 4.29825 4.31448 4.41527 4.43968 4.46707 4.53655 4.67396 4.73517 4.75745 4.88891 5.01311 5.02444 5.03179 5.11942 5.14344 5.20159 5.25823 5.34151 5.39559 5.62610 5.71057 5.72308 5.84817 5.91586 6.01907 6.17562 6.64242 6.97568 6.98828 7.49355 7.78372 8.76161 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.002080 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.389203 B =13458.683142 C =13645.285585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.230 4.230 3 C 0.281 3.719 4 H 0.117 0.883 5 N -0.721 5.721 6 C 0.705 3.295 7 O -0.628 6.628 8 N -0.728 5.728 9 C 0.194 3.806 10 C -0.058 4.058 11 C -0.165 4.165 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.411 4.411 17 H 0.105 0.895 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.182 4.182 25 C 0.078 3.922 26 H 0.099 0.901 27 C -0.149 4.149 28 C -0.149 4.149 29 C 0.037 3.963 30 O -0.390 6.390 31 H 0.242 0.758 32 H 0.412 0.588 33 H 0.408 0.592 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.273 2.662 -25.443 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.232 4.232 3 C 0.176 3.824 4 H 0.135 0.865 5 N -0.376 5.376 6 C 0.405 3.595 7 O -0.509 6.509 8 N -0.383 5.383 9 C 0.070 3.930 10 C -0.059 4.059 11 C -0.184 4.184 12 C -0.087 4.087 13 C -0.253 4.253 14 C 0.061 3.939 15 O -0.140 6.140 16 C -0.487 4.487 17 H 0.122 0.878 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.172 1.172 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.201 4.201 25 C 0.020 3.980 26 H 0.117 0.883 27 C -0.187 4.187 28 C -0.187 4.187 29 C -0.039 4.039 30 O -0.309 6.309 31 H 0.258 0.742 32 H 0.249 0.751 33 H 0.243 0.757 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.456 1.732 -25.477 27.230 hybrid contribution -0.393 1.064 1.259 1.695 sum 9.063 2.796 -24.218 26.009 Atomic orbital electron populations 1.25725 0.96951 1.00226 0.97416 1.23874 0.95671 1.00980 1.02627 1.17787 0.83062 0.99824 0.81740 0.86524 1.44905 1.70414 1.10297 1.12026 1.16031 0.77906 0.84563 0.80960 1.90894 1.58777 1.22310 1.78939 1.45069 1.70606 1.12234 1.10428 1.19888 1.00889 0.88198 0.83999 1.19434 0.93564 0.98933 0.93941 1.21004 0.93983 1.04938 0.98459 1.21174 0.99869 0.95290 0.92346 1.21378 0.92461 1.09098 1.02358 1.19855 0.90394 0.94075 0.89530 1.83955 1.34366 1.68822 1.26902 1.21873 0.94020 1.36781 0.96030 0.87817 1.26605 0.95559 0.97429 1.02597 1.70200 1.04310 1.45013 1.36541 0.84522 0.78934 0.77580 0.75133 1.17180 1.19464 1.19538 1.20219 0.99554 1.07729 0.92647 1.23307 0.95341 0.82891 0.96450 0.88328 1.23008 0.93194 0.98049 1.04451 1.22932 0.97662 0.93854 1.04232 1.23630 0.88111 0.93665 0.98529 1.89187 1.56836 1.16402 1.68521 0.74184 0.75144 0.75684 0.89274 0.92464 0.83183 0.83201 0.86143 0.91906 0.87817 0.90604 0.88267 0.90319 0.88624 0.88381 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.21 19.25 74.32 1.43 -2.78 16 2 C -0.23 -5.70 12.62 31.12 0.39 -5.31 16 3 C 0.28 5.78 2.28 43.18 0.10 5.87 16 4 H 0.12 2.46 7.58 -2.39 -0.02 2.44 16 5 N -0.72 -15.68 4.12 -466.56 -1.92 -17.60 16 6 C 0.71 19.60 8.51 179.05 1.52 21.12 16 7 O -0.63 -22.15 16.01 -3.97 -0.06 -22.22 16 8 N -0.73 -18.65 5.55 -482.28 -2.68 -21.33 16 9 C 0.19 5.47 5.80 85.63 0.50 5.97 16 10 C -0.06 -1.85 5.25 -19.88 -0.10 -1.96 16 11 C -0.16 -4.61 9.70 22.30 0.22 -4.39 16 12 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 13 C -0.23 -9.58 9.17 22.39 0.21 -9.38 16 14 C 0.11 5.40 6.65 22.58 0.15 5.55 16 15 O -0.23 -13.91 9.76 -22.80 -0.22 -14.13 16 16 C -0.41 -23.57 9.49 67.92 0.64 -22.92 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 19 N -0.92 -56.70 13.67 21.61 0.30 -56.41 16 20 Si 1.02 42.40 29.55 68.60 2.03 44.43 16 21 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 C -0.18 -7.56 9.65 22.39 0.22 -7.34 16 25 C 0.08 1.13 2.99 31.09 0.09 1.22 16 26 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 27 C -0.15 -1.49 6.53 31.61 0.21 -1.29 16 28 C -0.15 -1.18 7.09 31.61 0.22 -0.95 16 29 C 0.04 0.39 7.63 72.49 0.55 0.95 16 30 O -0.39 -6.79 10.46 -148.98 -1.56 -8.35 16 31 H 0.24 3.69 7.80 -4.41 -0.03 3.66 16 32 H 0.41 7.71 8.08 -92.71 -0.75 6.96 16 33 H 0.41 9.18 8.48 -92.71 -0.79 8.40 16 34 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 35 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.08 0.92 7.20 -2.39 -0.02 0.90 16 42 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.80 396.04 2.40 -76.39 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.51 Total: 37.70 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 7.04 Total: -18.47 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.30 Total: -95.34 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.84 Total: -44.70 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -78.80 2.40 -76.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320381197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.361 kcal (2) G-P(sol) polarization free energy of solvation -78.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds