Wall clock time and date at job start Wed Apr 1 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99750 * 2 1 4 4 C 1.53041 * 109.46097 * 239.99983 * 3 2 1 5 5 C 1.53197 * 109.31354 * 178.62567 * 4 3 2 6 6 N 1.46931 * 108.77493 * 54.63767 * 5 4 3 7 7 C 1.34772 * 120.63232 * 126.36404 * 6 5 4 8 8 O 1.21365 * 119.99831 * 6.70184 * 7 6 5 9 9 C 1.49315 * 120.00039 * 186.69329 * 7 6 5 10 10 O 1.21389 * 120.00291 * 7.20172 * 9 7 6 11 11 N 1.34773 * 120.00311 * 187.20062 * 9 7 6 12 12 C 1.39740 * 120.00507 * 175.01117 * 11 9 7 13 13 C 1.38994 * 120.00840 * 151.73719 * 12 11 9 14 14 C 1.37969 * 119.99162 * 180.02562 * 13 12 11 15 15 C 1.38935 * 120.00660 * 0.02562 * 14 13 12 16 16 O 1.35759 * 119.99393 * 180.02562 * 15 14 13 17 17 C 1.34807 * 117.00019 * 354.17017 * 16 15 14 18 18 H 1.07998 * 119.99262 * 5.08306 * 17 16 15 19 19 C 1.38646 * 119.99976 * 185.07763 * 17 16 15 20 20 N 1.31555 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99682 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46849 * 60.00520 * 21 19 17 23 23 H 1.48504 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47179 * 300.00335 * 21 19 17 25 25 C 1.38940 * 120.01611 * 0.26968 * 15 14 13 26 26 C 1.37970 * 120.00313 * 359.45456 * 25 15 14 27 27 C 1.46924 * 118.73559 * 306.64435 * 6 5 4 28 28 C 1.52757 * 109.01092 * 53.30540 * 27 6 5 29 29 H 1.08001 * 119.99958 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99646 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00545 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46077 * 359.97406 * 3 2 1 33 33 H 1.08997 * 109.49955 * 58.67627 * 4 3 2 34 34 H 1.09001 * 109.52440 * 298.59447 * 4 3 2 35 35 H 1.08999 * 109.58530 * 294.84954 * 5 4 3 36 36 H 1.08999 * 109.70412 * 174.49216 * 5 4 3 37 37 H 0.97006 * 119.99642 * 355.00858 * 11 9 7 38 38 H 1.07997 * 120.00535 * 359.97438 * 13 12 11 39 39 H 1.08004 * 119.99855 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00179 * 179.97438 * 20 19 17 41 41 H 1.08000 * 119.99828 * 179.70797 * 25 15 14 42 42 H 1.07998 * 120.00351 * 180.27622 * 26 25 15 43 43 H 1.09000 * 109.58531 * 173.14232 * 27 6 5 44 44 H 1.09002 * 109.58594 * 293.56690 * 27 6 5 45 45 H 1.09004 * 109.56647 * 185.55288 * 28 27 6 46 46 H 1.09007 * 109.38381 * 65.52012 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9432 1.3860 -1.2496 5 6 3.6813 2.7284 -1.2637 6 7 4.4142 2.8783 0.0009 7 6 5.7348 3.1474 0.0016 8 8 6.3054 3.3884 -1.0421 9 6 6.4957 3.1493 1.2863 10 8 5.9580 2.7821 2.3108 11 7 7.7796 3.5586 1.3085 12 6 8.4598 3.6598 2.5249 13 6 9.8396 3.4971 2.5654 14 6 10.5108 3.5965 3.7667 15 6 9.8076 3.8587 4.9359 16 8 10.4684 3.9569 6.1178 17 6 11.7858 3.6711 6.1080 18 1 12.2854 3.4597 5.1742 19 6 12.4991 3.6486 7.2967 20 7 11.8903 3.9057 8.4342 21 14 14.3248 3.2532 7.2830 22 1 15.0418 4.2544 6.4532 23 1 14.8502 3.2926 8.6714 24 1 14.5334 1.8976 6.7136 25 6 8.4276 4.0152 4.8967 26 6 7.7565 3.9216 3.6949 27 6 3.6812 2.7232 1.2648 28 6 2.9420 1.3865 1.2505 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3549 2.1335 -0.0005 33 1 2.3193 1.3046 -2.1397 34 1 3.6683 0.5722 -1.2380 35 1 2.9613 3.5401 -1.3673 36 1 4.3827 2.7534 -2.0977 37 1 8.2315 3.7830 0.4800 38 1 10.3861 3.2921 1.6568 39 1 11.5829 3.4697 3.7984 40 1 12.3893 3.8896 9.2658 41 1 7.8807 4.2143 5.8065 42 1 6.6844 4.0477 3.6638 43 1 4.3828 2.7423 2.0988 44 1 2.9612 3.5346 1.3716 45 1 2.3171 1.3053 2.1399 46 1 3.6667 0.5723 1.2395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321741777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:43 Heat of formation + Delta-G solvation = -26.594148 kcal Electronic energy + Delta-G solvation = -29020.687132 eV Core-core repulsion = 24877.591438 eV Total energy + Delta-G solvation = -4143.095694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26570 -39.64987 -38.66719 -38.07586 -36.71725 -35.12691 -34.02225 -32.25104 -31.56960 -31.26800 -30.31596 -28.43646 -26.36306 -25.42487 -24.19408 -23.40240 -22.40688 -21.59061 -20.66590 -20.23969 -19.81990 -18.24610 -17.93707 -17.35348 -16.98035 -16.24827 -16.06944 -15.53859 -15.25762 -15.01692 -14.73241 -14.62455 -14.36135 -14.27362 -14.18419 -13.72079 -13.67260 -13.36808 -12.96413 -12.89736 -12.76823 -12.49047 -12.42684 -12.00639 -11.77007 -11.69520 -11.52289 -11.48911 -11.17964 -11.10376 -11.03422 -10.79486 -10.75077 -10.49674 -9.84493 -9.72303 -9.38563 -9.10448 -8.96961 -8.77189 -8.29474 -7.01777 -6.49963 -4.07754 1.15921 1.91730 2.10917 2.14472 2.29153 3.08993 3.10865 3.14637 3.16873 3.39186 3.92843 4.19568 4.29436 4.41941 4.50483 4.60962 4.77546 4.87677 4.98117 5.03019 5.03993 5.15843 5.25177 5.34998 5.40424 5.45754 5.47450 5.57289 5.61105 5.64893 5.70711 5.75811 5.98517 6.06043 6.07556 6.10843 6.25490 6.29682 6.41068 6.67848 6.70711 6.82492 6.91704 7.04504 7.14408 7.28244 7.40983 7.64099 7.68642 7.93938 8.02857 8.94983 9.63695 10.67445 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.001934 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.208646 B =14473.867465 C =15172.965880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.065 4.065 4 C -0.124 4.124 5 C 0.107 3.893 6 N -0.580 5.580 7 C 0.512 3.488 8 O -0.526 6.526 9 C 0.499 3.501 10 O -0.498 6.498 11 N -0.617 5.617 12 C 0.023 3.977 13 C -0.083 4.083 14 C -0.218 4.218 15 C 0.149 3.851 16 O -0.172 6.172 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.177 4.177 26 C -0.068 4.068 27 C 0.046 3.954 28 C -0.121 4.121 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.415 0.585 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.162 0.838 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.838 -3.988 -17.843 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.163 4.163 3 C -0.084 4.084 4 C -0.162 4.162 5 C -0.015 4.015 6 N -0.313 5.313 7 C 0.295 3.705 8 O -0.403 6.403 9 C 0.281 3.719 10 O -0.377 6.377 11 N -0.261 5.261 12 C -0.069 4.069 13 C -0.103 4.103 14 C -0.238 4.238 15 C 0.094 3.906 16 O -0.075 6.075 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.197 4.197 26 C -0.088 4.088 27 C -0.075 4.075 28 C -0.159 4.159 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.252 0.748 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.178 0.822 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.926 -4.012 -17.208 25.171 hybrid contribution 0.963 -0.254 -0.576 1.151 sum -16.963 -4.267 -17.784 24.944 Atomic orbital electron populations 1.23848 0.95907 1.01798 1.01534 1.22941 0.95862 0.98182 0.99340 1.20431 0.96806 0.95757 0.95393 1.21921 0.98786 0.97454 0.98082 1.21736 0.95935 0.97322 0.86482 1.47939 1.07025 1.67761 1.08594 1.20027 0.82841 0.78285 0.89342 1.90747 1.68578 1.47720 1.33206 1.20055 0.83394 0.79279 0.89125 1.90305 1.66076 1.46664 1.34610 1.42928 1.11207 1.62160 1.09803 1.17272 0.91341 1.13482 0.84802 1.20472 0.91839 1.00227 0.97768 1.20979 1.00821 1.10408 0.91624 1.19455 0.91645 0.92828 0.86626 1.83981 1.23282 1.74358 1.25892 1.21292 0.81212 1.49293 0.95122 0.89001 1.25305 1.00489 0.96566 0.94116 1.70024 1.36880 1.44414 0.98035 0.85772 0.80375 0.79288 0.77960 1.19450 1.20244 1.19454 1.20134 0.91554 1.10107 0.97907 1.20721 0.99706 0.97908 0.90464 1.23255 0.99052 0.96816 0.88376 1.21789 0.98531 0.98107 0.97456 0.88641 0.88553 0.87413 0.90645 0.90426 0.91193 0.90991 0.88704 0.74846 0.86834 0.84898 0.91851 0.85898 0.85051 0.82178 0.91802 0.90361 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 14.32 29.01 0.42 -0.78 16 2 C -0.15 -0.99 8.77 -36.03 -0.32 -1.30 16 3 C -0.07 -0.46 2.44 -91.73 -0.22 -0.68 16 4 C -0.12 -0.87 5.34 -26.61 -0.14 -1.01 16 5 C 0.11 0.89 6.42 -3.70 -0.02 0.87 16 6 N -0.58 -6.10 2.98 -173.59 -0.52 -6.62 16 7 C 0.51 6.57 7.74 -11.65 -0.09 6.48 16 8 O -0.53 -7.53 15.94 5.48 0.09 -7.44 16 9 C 0.50 7.03 7.55 -11.65 -0.09 6.94 16 10 O -0.50 -7.63 10.43 5.46 0.06 -7.58 16 11 N -0.62 -8.80 5.34 -10.27 -0.05 -8.85 16 12 C 0.02 0.40 6.38 -83.69 -0.53 -0.13 16 13 C -0.08 -1.45 9.94 -39.40 -0.39 -1.84 16 14 C -0.22 -4.53 9.16 -39.42 -0.36 -4.89 16 15 C 0.15 3.50 6.65 -39.06 -0.26 3.24 16 16 O -0.17 -4.79 9.75 0.08 0.00 -4.79 16 17 C -0.39 -10.68 9.48 30.88 0.29 -10.39 16 18 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 21 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 C -0.18 -3.70 9.98 -39.42 -0.39 -4.10 16 26 C -0.07 -1.26 8.68 -39.40 -0.34 -1.60 16 27 C 0.05 0.44 6.24 -3.94 -0.02 0.41 16 28 C -0.12 -1.00 5.33 -26.84 -0.14 -1.15 16 29 H 0.10 0.54 7.83 -52.49 -0.41 0.13 16 30 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 31 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.08 0.50 7.78 -51.93 -0.40 0.10 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.86 7.05 -51.93 -0.37 0.50 16 37 H 0.41 5.06 8.28 -40.82 -0.34 4.72 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.72 5.63 -52.48 -0.30 2.42 16 40 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 42 H 0.13 2.26 6.01 -52.49 -0.32 1.95 16 43 H 0.16 1.89 3.78 -56.79 -0.21 1.68 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -30.73 379.87 -7.67 -38.40 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.98 Total: 9.06 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.72 Total: -8.96 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.19 Total: -39.43 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.15 Total: -19.80 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.73 -7.67 -38.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321741777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.801 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds