Wall clock time and date at job start Wed Apr 1 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99750 * 2 1 4 4 C 1.53041 * 109.46097 * 239.99983 * 3 2 1 5 5 C 1.53197 * 109.31354 * 178.62567 * 4 3 2 6 6 N 1.46931 * 108.77493 * 54.63767 * 5 4 3 7 7 C 1.34772 * 120.63232 * 126.36404 * 6 5 4 8 8 O 1.21365 * 119.99831 * 6.70184 * 7 6 5 9 9 C 1.49315 * 120.00039 * 186.69329 * 7 6 5 10 10 O 1.21389 * 120.00291 * 7.20172 * 9 7 6 11 11 N 1.34773 * 120.00311 * 187.20062 * 9 7 6 12 12 C 1.39740 * 120.00507 * 175.01117 * 11 9 7 13 13 C 1.38994 * 120.00840 * 151.73719 * 12 11 9 14 14 C 1.37969 * 119.99162 * 180.02562 * 13 12 11 15 15 C 1.38935 * 120.00660 * 0.02562 * 14 13 12 16 16 O 1.35759 * 119.99393 * 180.02562 * 15 14 13 17 17 C 1.34807 * 117.00019 * 354.17017 * 16 15 14 18 18 H 1.07998 * 119.99262 * 5.08306 * 17 16 15 19 19 C 1.38646 * 119.99976 * 185.07763 * 17 16 15 20 20 N 1.31555 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99682 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46849 * 60.00520 * 21 19 17 23 23 H 1.48504 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47179 * 300.00335 * 21 19 17 25 25 C 1.38940 * 120.01611 * 0.26968 * 15 14 13 26 26 C 1.37970 * 120.00313 * 359.45456 * 25 15 14 27 27 C 1.46924 * 118.73559 * 306.64435 * 6 5 4 28 28 C 1.52757 * 109.01092 * 53.30540 * 27 6 5 29 29 H 1.08001 * 119.99958 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99646 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00545 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46077 * 359.97406 * 3 2 1 33 33 H 1.08997 * 109.49955 * 58.67627 * 4 3 2 34 34 H 1.09001 * 109.52440 * 298.59447 * 4 3 2 35 35 H 1.08999 * 109.58530 * 294.84954 * 5 4 3 36 36 H 1.08999 * 109.70412 * 174.49216 * 5 4 3 37 37 H 0.97006 * 119.99642 * 355.00858 * 11 9 7 38 38 H 1.07997 * 120.00535 * 359.97438 * 13 12 11 39 39 H 1.08004 * 119.99855 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00179 * 179.97438 * 20 19 17 41 41 H 1.08000 * 119.99828 * 179.70797 * 25 15 14 42 42 H 1.07998 * 120.00351 * 180.27622 * 26 25 15 43 43 H 1.09000 * 109.58531 * 173.14232 * 27 6 5 44 44 H 1.09002 * 109.58594 * 293.56690 * 27 6 5 45 45 H 1.09004 * 109.56647 * 185.55288 * 28 27 6 46 46 H 1.09007 * 109.38381 * 65.52012 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9432 1.3860 -1.2496 5 6 3.6813 2.7284 -1.2637 6 7 4.4142 2.8783 0.0009 7 6 5.7348 3.1474 0.0016 8 8 6.3054 3.3884 -1.0421 9 6 6.4957 3.1493 1.2863 10 8 5.9580 2.7821 2.3108 11 7 7.7796 3.5586 1.3085 12 6 8.4598 3.6598 2.5249 13 6 9.8396 3.4971 2.5654 14 6 10.5108 3.5965 3.7667 15 6 9.8076 3.8587 4.9359 16 8 10.4684 3.9569 6.1178 17 6 11.7858 3.6711 6.1080 18 1 12.2854 3.4597 5.1742 19 6 12.4991 3.6486 7.2967 20 7 11.8903 3.9057 8.4342 21 14 14.3248 3.2532 7.2830 22 1 15.0418 4.2544 6.4532 23 1 14.8502 3.2926 8.6714 24 1 14.5334 1.8976 6.7136 25 6 8.4276 4.0152 4.8967 26 6 7.7565 3.9216 3.6949 27 6 3.6812 2.7232 1.2648 28 6 2.9420 1.3865 1.2505 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3549 2.1335 -0.0005 33 1 2.3193 1.3046 -2.1397 34 1 3.6683 0.5722 -1.2380 35 1 2.9613 3.5401 -1.3673 36 1 4.3827 2.7534 -2.0977 37 1 8.2315 3.7830 0.4800 38 1 10.3861 3.2921 1.6568 39 1 11.5829 3.4697 3.7984 40 1 12.3893 3.8896 9.2658 41 1 7.8807 4.2143 5.8065 42 1 6.6844 4.0477 3.6638 43 1 4.3828 2.7423 2.0988 44 1 2.9612 3.5346 1.3716 45 1 2.3171 1.3053 2.1399 46 1 3.6667 0.5723 1.2395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321741777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:42 Heat of formation + Delta-G solvation = -45.394294 kcal Electronic energy + Delta-G solvation = -29021.502367 eV Core-core repulsion = 24877.591438 eV Total energy + Delta-G solvation = -4143.910929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36868 -40.95924 -40.06908 -38.97554 -38.25448 -36.05170 -35.24498 -34.16003 -32.25322 -31.94729 -31.90275 -29.94036 -27.59519 -27.00793 -25.12416 -24.31757 -23.89516 -22.82779 -21.84215 -20.94313 -20.59823 -19.90318 -19.13366 -18.90131 -18.19496 -17.61865 -17.12418 -16.63433 -16.36601 -16.09714 -15.91423 -15.70823 -15.56293 -15.50153 -15.21197 -15.04135 -14.87342 -14.57939 -14.45156 -14.15035 -13.67053 -13.59091 -13.45707 -13.37554 -13.13439 -13.05553 -12.72455 -12.57894 -12.38788 -12.16474 -12.13625 -11.84378 -11.73161 -11.49884 -11.40978 -11.09459 -10.60414 -10.36665 -10.03798 -9.87349 -9.81693 -8.65922 -8.45063 -6.12246 -0.01601 0.51361 0.73162 1.17794 1.38019 1.42841 1.48245 1.53916 2.01023 2.19526 2.36593 2.81653 3.12134 3.16632 3.51261 3.72921 3.78189 3.98123 4.01755 4.09968 4.12254 4.30339 4.34053 4.42393 4.47090 4.49723 4.51786 4.60947 4.74067 4.82670 4.86816 4.94561 5.01136 5.03565 5.09589 5.13133 5.16010 5.27450 5.33558 5.38163 5.38384 5.56599 5.66533 5.78781 5.89363 5.96225 6.02569 6.07421 6.19484 6.63083 6.84849 6.99150 7.78369 8.77389 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.001934 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.208646 B =14473.867465 C =15172.965880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.060 4.060 4 C -0.118 4.118 5 C 0.104 3.896 6 N -0.572 5.572 7 C 0.514 3.486 8 O -0.542 6.542 9 C 0.502 3.498 10 O -0.509 6.509 11 N -0.615 5.615 12 C 0.052 3.948 13 C -0.076 4.076 14 C -0.220 4.220 15 C 0.111 3.889 16 O -0.227 6.227 17 C -0.414 4.414 18 H 0.107 0.893 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.184 4.184 26 C -0.070 4.070 27 C 0.045 3.955 28 C -0.117 4.117 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.428 0.572 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.131 -4.537 -21.169 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.176 4.176 3 C -0.078 4.078 4 C -0.156 4.156 5 C -0.017 4.017 6 N -0.305 5.305 7 C 0.296 3.704 8 O -0.421 6.421 9 C 0.285 3.715 10 O -0.387 6.387 11 N -0.261 5.261 12 C -0.041 4.041 13 C -0.096 4.096 14 C -0.239 4.239 15 C 0.060 3.940 16 O -0.133 6.133 17 C -0.489 4.489 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.204 4.204 26 C -0.089 4.089 27 C -0.075 4.075 28 C -0.155 4.155 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.268 0.732 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.288 -4.571 -20.612 28.596 hybrid contribution 0.963 -0.118 0.150 0.981 sum -18.325 -4.690 -20.461 27.865 Atomic orbital electron populations 1.24006 0.95741 1.02559 1.00191 1.22918 0.96137 0.97946 1.00553 1.20385 0.96646 0.96348 0.94446 1.21890 0.98615 0.96154 0.98977 1.21951 0.95978 0.98815 0.84928 1.48077 1.06338 1.66136 1.09899 1.19698 0.83529 0.78886 0.88273 1.90749 1.69038 1.49031 1.33255 1.20429 0.83084 0.78298 0.89653 1.90358 1.66352 1.46617 1.35401 1.42879 1.11401 1.62619 1.09192 1.17381 0.91513 1.09712 0.85513 1.20796 0.92053 0.98711 0.98067 1.21111 1.00994 1.09929 0.91900 1.19937 0.92662 0.94669 0.86726 1.83952 1.23843 1.77410 1.28120 1.21823 0.81618 1.49453 0.96053 0.87625 1.26595 1.05778 0.96264 0.93431 1.70179 1.39104 1.47565 0.98868 0.84649 0.73709 0.79666 0.78223 1.17986 1.19915 1.18189 1.20287 0.90978 1.10166 0.98991 1.20884 1.00398 0.97560 0.90084 1.23205 0.98815 0.98281 0.87236 1.21744 0.98392 0.96650 0.98717 0.87861 0.87892 0.87741 0.89577 0.88545 0.92330 0.88979 0.89373 0.73250 0.82679 0.84921 0.91853 0.86293 0.83641 0.84149 0.89997 0.89694 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 14.32 67.78 0.97 -0.87 16 2 C -0.16 -1.79 8.77 25.65 0.22 -1.56 16 3 C -0.06 -0.68 2.44 -11.51 -0.03 -0.71 16 4 C -0.12 -1.34 5.34 30.67 0.16 -1.18 16 5 C 0.10 1.45 6.42 86.36 0.55 2.00 16 6 N -0.57 -10.71 2.98 -821.46 -2.45 -13.15 16 7 C 0.51 12.08 7.74 87.23 0.68 12.75 16 8 O -0.54 -14.31 15.94 -3.29 -0.05 -14.36 16 9 C 0.50 13.09 7.55 87.23 0.66 13.74 16 10 O -0.51 -14.77 10.43 -3.37 -0.04 -14.81 16 11 N -0.62 -15.90 5.34 -304.75 -1.63 -17.53 16 12 C 0.05 1.68 6.38 38.24 0.24 1.92 16 13 C -0.08 -2.49 9.94 22.39 0.22 -2.27 16 14 C -0.22 -9.06 9.16 22.37 0.20 -8.86 16 15 C 0.11 5.41 6.65 22.61 0.15 5.56 16 16 O -0.23 -13.38 9.75 -22.61 -0.22 -13.61 16 17 C -0.41 -23.44 9.48 67.92 0.64 -22.80 16 18 H 0.11 5.38 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 20 N -0.92 -55.80 13.67 21.61 0.30 -55.51 16 21 Si 1.02 41.94 29.55 68.60 2.03 43.97 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 C -0.18 -7.92 9.98 22.37 0.22 -7.70 16 26 C -0.07 -2.51 8.68 22.39 0.19 -2.31 16 27 C 0.05 0.77 6.24 86.22 0.54 1.31 16 28 C -0.12 -1.72 5.33 30.53 0.16 -1.56 16 29 H 0.10 0.85 7.83 -2.91 -0.02 0.82 16 30 H 0.10 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.10 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.09 0.83 7.78 -2.39 -0.02 0.82 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.39 7.05 -2.39 -0.02 1.38 16 37 H 0.43 9.08 8.28 -92.70 -0.77 8.31 16 38 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.13 5.42 5.63 -2.91 -0.02 5.41 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 42 H 0.15 4.83 6.01 -2.91 -0.02 4.81 16 43 H 0.14 3.10 3.78 -79.30 -0.30 2.80 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -70.44 379.87 4.17 -66.26 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.03 Total: 32.07 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 6.27 Total: -13.35 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -3.78 Total: -86.18 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.31 Total: -42.77 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.44 4.17 -66.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321741777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.870 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds