Wall clock time and date at job start Wed Apr 1 2020 03:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00164 * 2 1 4 4 N 1.46501 * 109.47280 * 125.00220 * 3 2 1 5 5 C 1.46504 * 119.99845 * 270.00080 * 4 3 2 6 6 C 1.50700 * 109.47190 * 263.84572 * 5 4 3 7 7 C 1.30994 * 120.00338 * 124.99815 * 6 5 4 8 8 C 1.34774 * 120.00248 * 90.00109 * 4 3 2 9 9 O 1.21349 * 119.99751 * 354.62449 * 8 4 3 10 10 C 1.49453 * 120.00151 * 174.63535 * 8 4 3 11 11 O 1.21355 * 119.99616 * 0.51548 * 10 8 4 12 12 N 1.34776 * 120.00005 * 180.52249 * 10 8 4 13 13 C 1.46504 * 119.99851 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.46829 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93130 * 89.99885 * 14 13 12 16 16 C 1.38100 * 120.06785 * 179.97438 * 15 14 13 17 17 C 1.38871 * 119.93058 * 0.02562 * 16 15 14 18 18 O 1.35759 * 120.07038 * 180.02562 * 17 16 15 19 19 C 1.34832 * 116.99569 * 5.39667 * 18 17 16 20 20 H 1.08005 * 119.99915 * 354.91867 * 19 18 17 21 21 C 1.38650 * 119.99567 * 174.92066 * 19 18 17 22 22 N 1.31556 * 120.00284 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99921 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46668 * 90.00001 * 23 21 19 25 25 H 1.48495 * 109.47338 * 210.00128 * 23 21 19 26 26 H 1.48498 * 109.46958 * 330.00137 * 23 21 19 27 27 C 1.38880 * 119.86237 * 0.27541 * 17 16 15 28 28 C 1.38100 * 119.93249 * 359.45156 * 27 17 16 29 29 H 1.08000 * 120.00194 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00128 * 180.02562 * 1 2 3 31 31 H 1.08009 * 119.99938 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46904 * 5.00226 * 3 2 1 33 33 H 1.09003 * 109.47140 * 244.99934 * 3 2 1 34 34 H 1.09007 * 109.46888 * 23.84191 * 5 4 3 35 35 H 1.09000 * 109.46948 * 143.83991 * 5 4 3 36 36 H 1.07997 * 119.99828 * 305.00101 * 6 5 4 37 37 H 1.08007 * 119.99968 * 0.02562 * 7 6 5 38 38 H 1.07997 * 120.00097 * 179.97438 * 7 6 5 39 39 H 0.97004 * 120.00020 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.47201 * 59.99475 * 13 12 10 41 41 H 1.09000 * 109.46673 * 299.99764 * 13 12 10 42 42 H 1.08004 * 119.96495 * 359.97438 * 15 14 13 43 43 H 1.08005 * 120.03058 * 180.02562 * 16 15 14 44 44 H 0.97008 * 120.00049 * 180.02562 * 22 21 19 45 45 H 1.08009 * 120.03150 * 179.72407 * 27 17 16 46 46 H 1.07991 * 119.96965 * 180.27807 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.9795 3.3073 2.5408 7 6 2.0880 4.2306 2.8027 8 6 4.2497 0.8661 0.9824 9 8 4.5807 0.3358 -0.0577 10 6 5.2346 1.0026 2.0981 11 8 4.9008 1.5243 3.1417 12 7 6.4936 0.5463 1.9452 13 6 7.4592 0.6806 3.0388 14 6 8.7819 0.0955 2.6155 15 6 9.7233 0.8957 1.9941 16 6 10.9365 0.3626 1.6055 17 6 11.2106 -0.9787 1.8389 18 8 12.4025 -1.5056 1.4586 19 6 13.3190 -0.6506 0.9615 20 1 13.0608 0.3863 0.8041 21 6 14.5928 -1.1025 0.6525 22 7 14.9071 -2.3656 0.8437 23 14 15.8624 0.0818 -0.0368 24 1 16.6217 0.6987 1.0804 25 1 16.7979 -0.6560 -0.9232 26 1 15.1768 1.1442 -0.8155 27 6 10.2607 -1.7811 2.4575 28 6 9.0516 -1.2408 2.8488 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 1.4736 1.7958 2.4999 35 1 3.0162 1.2872 3.2282 36 1 4.0161 3.5798 2.4080 37 1 1.0514 3.9581 2.9359 38 1 2.3896 5.2643 2.8862 39 1 6.7603 0.1290 1.1111 40 1 7.0910 0.1487 3.9160 41 1 7.5890 1.7353 3.2813 42 1 9.5093 1.9387 1.8125 43 1 11.6714 0.9882 1.1206 44 1 15.7985 -2.6817 0.6278 45 1 10.4693 -2.8257 2.6363 46 1 8.3143 -1.8632 3.3339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322524874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:16 Heat of formation + Delta-G solvation = -32.123542 kcal Electronic energy + Delta-G solvation = -28499.723653 eV Core-core repulsion = 24356.388187 eV Total energy + Delta-G solvation = -4143.335466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95502 -40.86084 -39.72583 -38.53546 -37.87852 -35.76625 -35.17986 -34.29069 -33.38131 -31.87152 -31.52559 -28.56017 -27.84538 -27.31683 -26.29818 -23.89752 -23.67091 -22.15830 -21.65771 -20.99902 -20.41062 -19.88321 -19.05335 -18.75577 -18.06223 -17.15581 -17.00508 -16.73191 -16.49766 -16.28457 -16.01814 -15.82917 -15.62284 -15.52969 -15.24578 -14.84205 -14.77496 -14.41065 -14.28318 -14.25393 -14.12180 -13.67608 -13.35907 -13.12527 -13.00744 -12.99003 -12.59436 -12.52224 -12.38815 -12.31586 -12.27570 -12.12376 -12.04778 -11.22408 -10.85053 -10.65452 -10.47118 -10.29689 -10.10484 -9.91928 -9.82825 -9.03549 -8.49568 -6.17889 0.33402 0.47233 0.56290 0.99967 1.34901 1.41143 1.43181 1.52060 1.68400 2.12106 2.16122 2.55955 2.84231 3.13379 3.36812 3.46941 3.82252 3.91415 4.00649 4.02413 4.10254 4.15195 4.16812 4.42598 4.45624 4.54118 4.55177 4.66431 4.70773 4.78239 4.82433 4.97681 5.01837 5.05279 5.12608 5.21913 5.24117 5.24664 5.49645 5.66681 5.67372 5.71383 5.74972 5.77020 5.87038 5.89700 6.00031 6.13829 6.23303 6.64784 6.92845 6.95106 7.73921 8.73159 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.001853 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.339474 B =15105.160417 C =15446.449871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.192 4.192 3 C 0.139 3.861 4 N -0.572 5.572 5 C 0.133 3.867 6 C -0.170 4.170 7 C -0.173 4.173 8 C 0.502 3.498 9 O -0.546 6.546 10 C 0.503 3.497 11 O -0.523 6.523 12 N -0.689 5.689 13 C 0.184 3.816 14 C -0.188 4.188 15 C -0.045 4.045 16 C -0.245 4.245 17 C 0.123 3.877 18 O -0.228 6.228 19 C -0.414 4.414 20 H 0.104 0.896 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.253 1.253 27 C -0.206 4.206 28 C -0.043 4.043 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.413 0.587 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.552 11.644 2.519 31.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.211 4.211 3 C 0.018 3.982 4 N -0.303 5.303 5 C 0.012 3.988 6 C -0.190 4.190 7 C -0.210 4.210 8 C 0.284 3.716 9 O -0.424 6.424 10 C 0.284 3.716 11 O -0.401 6.401 12 N -0.341 5.341 13 C 0.063 3.937 14 C -0.189 4.189 15 C -0.063 4.063 16 C -0.265 4.265 17 C 0.072 3.928 18 O -0.135 6.135 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.838 3.162 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.176 1.176 27 C -0.225 4.225 28 C -0.061 4.061 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.249 0.751 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -29.354 11.370 2.704 31.595 hybrid contribution 1.494 -0.256 -0.798 1.713 sum -27.860 11.114 1.906 30.056 Atomic orbital electron populations 1.24097 0.94844 1.03499 0.96953 1.23131 0.96772 0.98069 1.03115 1.20843 0.91738 0.96860 0.88713 1.47959 1.10009 1.58593 1.13743 1.21167 1.01038 0.92737 0.83811 1.23097 0.99299 0.95116 1.01445 1.24027 0.99508 0.98624 0.98856 1.20360 0.84025 0.79543 0.87646 1.90771 1.78815 1.42973 1.29822 1.20074 0.83606 0.79961 0.87943 1.90730 1.77695 1.43010 1.28655 1.46132 1.09777 1.58734 1.19486 1.20107 0.83542 1.01534 0.88547 1.19497 0.96814 0.94350 1.08226 1.20973 0.91333 0.99885 0.94136 1.21254 1.00370 0.95104 1.09740 1.20014 0.86956 0.93269 0.92555 1.83951 1.20832 1.37357 1.71310 1.21837 0.91372 0.93038 1.42758 0.87900 1.26597 0.99156 0.98936 0.97320 1.70181 1.21820 1.16408 1.47175 0.84588 0.76477 0.76840 0.78341 1.18779 1.19660 1.17629 1.20464 0.95109 0.99997 1.06974 1.20914 0.94504 0.94643 0.96032 0.86275 0.87425 0.89109 0.86718 0.90152 0.87628 0.88165 0.89332 0.86526 0.87940 0.75088 0.89392 0.89719 0.84141 0.86157 0.91780 0.86639 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 14.32 67.79 0.97 -0.40 16 2 C -0.19 -2.64 9.85 25.65 0.25 -2.39 16 3 C 0.14 1.95 5.78 85.63 0.49 2.45 16 4 N -0.57 -10.10 2.46 -832.07 -2.04 -12.15 16 5 C 0.13 1.93 5.45 85.63 0.47 2.40 16 6 C -0.17 -2.61 8.71 25.65 0.22 -2.39 16 7 C -0.17 -1.87 14.32 67.79 0.97 -0.90 16 8 C 0.50 11.76 7.67 87.27 0.67 12.43 16 9 O -0.55 -15.67 16.11 -3.24 -0.05 -15.72 16 10 C 0.50 11.76 7.73 87.27 0.67 12.44 16 11 O -0.52 -12.66 11.70 -3.26 -0.04 -12.70 16 12 N -0.69 -15.91 5.54 -468.13 -2.59 -18.50 16 13 C 0.18 4.15 5.80 85.63 0.50 4.65 16 14 C -0.19 -5.37 5.25 -19.83 -0.10 -5.47 16 15 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 16 C -0.25 -10.25 9.17 22.39 0.21 -10.04 16 17 C 0.12 5.95 6.65 22.58 0.15 6.10 16 18 O -0.23 -13.53 9.76 -22.86 -0.22 -13.75 16 19 C -0.41 -23.76 9.49 67.92 0.64 -23.11 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 21 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 22 N -0.92 -55.89 13.67 21.61 0.30 -55.59 16 23 Si 1.02 42.41 29.55 68.60 2.03 44.44 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 27 C -0.21 -8.40 9.99 22.39 0.22 -8.17 16 28 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 29 H 0.12 0.56 7.84 -2.91 -0.02 0.54 16 30 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.09 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.11 0.94 7.72 -2.39 -0.02 0.92 16 33 H 0.08 1.37 7.50 -2.39 -0.02 1.36 16 34 H 0.11 0.95 7.68 -2.38 -0.02 0.93 16 35 H 0.10 1.78 5.82 -2.39 -0.01 1.77 16 36 H 0.09 1.77 7.30 -2.91 -0.02 1.75 16 37 H 0.12 0.77 7.84 -2.91 -0.02 0.75 16 38 H 0.10 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.41 10.03 7.94 -92.71 -0.74 9.29 16 40 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 41 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 43 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 44 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 45 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.15 3.61 8.06 -2.92 -0.02 3.59 16 Total: -1.00 -72.21 398.45 4.87 -67.34 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.27 Total: 32.16 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 7.23 Total: -15.53 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -4.34 Total: -86.24 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.31 Total: -42.18 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -72.21 4.87 -67.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322524874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.214 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds