Wall clock time and date at job start Wed Apr 1 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 H 1.09006 * 110.53223 * 302.16697 * 3 2 1 5 5 C 1.51581 * 110.76615 * 179.27025 * 3 2 1 6 6 O 1.21236 * 127.15607 * 61.63140 * 5 3 2 7 7 N 1.34763 * 105.68529 * 241.71151 * 5 3 2 8 8 C 1.46503 * 124.17551 * 179.97438 * 7 5 3 9 9 C 1.50700 * 109.47485 * 269.72315 * 8 7 5 10 10 C 1.38322 * 119.96732 * 269.98453 * 9 8 7 11 11 C 1.38278 * 120.13633 * 180.02562 * 10 9 8 12 12 C 1.38118 * 120.07181 * 359.95648 * 11 10 9 13 13 C 1.38858 * 119.92982 * 359.79003 * 12 11 10 14 14 O 1.35746 * 120.07001 * 180.25798 * 13 12 11 15 15 C 1.34828 * 117.00147 * 354.70705 * 14 13 12 16 16 H 1.08005 * 120.00113 * 5.07860 * 15 14 13 17 17 C 1.38658 * 120.00325 * 185.07820 * 15 14 13 18 18 N 1.31561 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00050 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47494 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47024 * 119.99903 * 19 17 15 22 22 H 1.48503 * 109.47222 * 240.00178 * 19 17 15 23 23 C 1.38077 * 119.96058 * 89.99972 * 9 8 7 24 24 C 1.33788 * 111.64389 * 359.65902 * 7 5 3 25 25 O 1.21535 * 123.76947 * 180.23013 * 24 7 5 26 26 N 1.34525 * 112.45907 * 0.22451 * 24 7 5 27 27 C 1.46497 * 126.69238 * 179.97438 * 26 24 7 28 28 C 1.53005 * 117.49674 * 8.77402 * 27 26 24 29 29 C 1.53001 * 117.49796 * 300.12041 * 27 26 24 30 30 H 1.08997 * 109.47549 * 60.00026 * 1 2 3 31 31 H 1.08997 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47185 * 300.00274 * 1 2 3 33 33 H 1.08991 * 109.47117 * 239.99911 * 2 1 3 34 34 H 1.08998 * 109.47204 * 119.99279 * 2 1 3 35 35 H 1.09003 * 109.47044 * 149.72807 * 8 7 5 36 36 H 1.09000 * 109.47060 * 29.72678 * 8 7 5 37 37 H 1.07998 * 119.93355 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.96142 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.03434 * 180.02562 * 12 11 10 40 40 H 0.97001 * 120.00026 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.04007 * 359.95934 * 23 9 8 42 42 H 1.08999 * 115.55092 * 154.44602 * 27 26 24 43 43 H 1.08996 * 117.49849 * 0.02562 * 28 27 26 44 44 H 1.08997 * 117.49673 * 145.02008 * 28 27 26 45 45 H 1.09004 * 117.49987 * 214.98184 * 29 27 26 46 46 H 1.09004 * 117.50074 * 359.96794 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6550 1.9841 -0.8641 5 6 3.5553 1.4769 0.0181 6 8 4.3079 1.0309 -0.8213 7 7 3.8918 2.1047 1.1620 8 6 5.2709 2.3576 1.5869 9 6 5.7611 1.1996 2.4174 10 6 5.5820 1.2082 3.7889 11 6 6.0309 0.1477 4.5544 12 6 6.6590 -0.9243 3.9511 13 6 6.8357 -0.9383 2.5739 14 8 7.4480 -1.9928 1.9774 15 6 7.9587 -2.9423 2.7871 16 1 7.7994 -2.8852 3.8538 17 6 8.6886 -3.9920 2.2504 18 7 8.8831 -4.0613 0.9511 19 14 9.3955 -5.3077 3.3721 20 1 9.0374 -5.0022 4.7806 21 1 8.8371 -6.6313 2.9959 22 1 10.8736 -5.3359 3.2317 23 6 6.3889 0.1312 1.8083 24 6 2.8110 2.4745 1.8584 25 8 2.8606 3.0604 2.9221 26 7 1.6632 2.1255 1.2497 27 6 0.3038 2.3753 1.7352 28 6 0.1457 3.2815 2.9578 29 6 -0.0851 1.7739 3.0872 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 5.3065 3.2711 2.1806 36 1 5.9068 2.4700 0.7088 37 1 5.0905 2.0449 4.2630 38 1 5.8899 0.1575 5.6252 39 1 7.0091 -1.7525 4.5495 40 1 9.3940 -4.7954 0.5756 41 1 6.5282 0.1248 0.7374 42 1 -0.4676 2.4274 0.9669 43 1 1.0531 3.6921 3.4006 44 1 -0.7299 3.9295 2.9940 45 1 -1.1125 1.4306 3.2085 46 1 0.6704 1.1919 3.6152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324610558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:30 Heat of formation + Delta-G solvation = -4.057611 kcal Electronic energy + Delta-G solvation = -30633.208027 eV Core-core repulsion = 26491.089591 eV Total energy + Delta-G solvation = -4142.118436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53482 -39.12877 -38.82483 -37.62755 -36.56448 -36.23047 -34.70818 -32.67755 -32.25474 -30.76830 -29.12260 -27.68266 -26.28381 -25.20396 -23.92499 -22.67100 -22.53800 -21.84217 -21.48627 -20.85425 -19.73439 -17.98345 -17.43083 -17.09209 -16.81447 -16.42201 -16.21277 -15.41824 -15.07545 -14.83765 -14.79487 -14.55941 -14.41672 -14.29464 -14.07878 -13.75108 -13.56778 -13.40209 -12.99016 -12.77101 -12.51634 -12.40795 -11.96884 -11.83849 -11.74495 -11.64993 -11.58935 -11.36772 -11.09875 -11.02905 -10.93697 -10.75946 -10.62960 -10.45122 -10.42333 -9.97154 -9.71192 -9.31755 -8.87706 -8.84803 -8.19189 -7.25589 -6.44219 -4.03631 1.62768 1.70299 2.22675 2.36754 2.85446 2.96869 3.12558 3.13786 3.19287 3.59779 3.89998 3.96356 4.31138 4.51272 4.52516 4.55055 4.68689 4.73905 4.94128 4.97654 5.05676 5.08536 5.11600 5.18671 5.38335 5.41395 5.47144 5.56152 5.61481 5.70608 5.74425 5.79831 5.81521 5.93590 5.97949 5.98349 6.09450 6.15698 6.33627 6.40215 6.60564 6.88063 7.06429 7.10326 7.26903 7.34375 7.38684 7.42415 7.77633 8.00067 8.06944 9.01029 9.71272 10.73726 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002988 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.298615 B = 9368.835608 C = 9834.917347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C 0.098 3.902 4 H 0.124 0.876 5 C 0.523 3.477 6 O -0.455 6.455 7 N -0.568 5.568 8 C 0.166 3.834 9 C -0.083 4.083 10 C -0.184 4.184 11 C -0.080 4.080 12 C -0.224 4.224 13 C 0.149 3.851 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.166 4.166 24 C 0.705 3.295 25 O -0.537 6.537 26 N -0.597 5.597 27 C 0.106 3.894 28 C -0.185 4.185 29 C -0.190 4.190 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.269 0.731 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.591 12.654 -0.298 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C -0.009 4.009 4 H 0.141 0.859 5 C 0.309 3.691 6 O -0.323 6.323 7 N -0.313 5.313 8 C 0.047 3.953 9 C -0.085 4.085 10 C -0.204 4.204 11 C -0.098 4.098 12 C -0.243 4.243 13 C 0.095 3.905 14 O -0.081 6.081 15 C -0.469 4.469 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.186 4.186 24 C 0.408 3.592 25 O -0.411 6.411 26 N -0.334 5.334 27 C 0.003 3.997 28 C -0.223 4.223 29 C -0.229 4.229 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.010 12.552 -0.559 21.960 hybrid contribution 0.423 -0.848 0.646 1.147 sum -17.586 11.704 0.087 21.125 Atomic orbital electron populations 1.21975 0.94276 1.02828 1.02510 1.21683 0.97348 0.92366 1.04608 1.22200 0.92435 0.97030 0.89265 0.85866 1.20801 0.90626 0.76552 0.81110 1.90845 1.58157 1.43293 1.40017 1.46560 1.08553 1.54338 1.21859 1.20538 0.77764 0.97486 0.99542 1.19370 1.00063 0.95187 0.93836 1.20547 1.06681 1.00183 0.92951 1.20741 0.97013 0.93473 0.98554 1.21247 1.07196 1.00955 0.94920 1.19297 0.92032 0.88102 0.91054 1.83991 1.62607 1.26648 1.34818 1.21366 1.32813 1.01926 0.90761 0.89083 1.25290 0.96498 0.98126 0.96590 1.70057 1.37625 1.31352 1.10548 0.85655 0.78791 0.79698 0.79319 1.19118 1.20146 1.20111 1.20133 1.05635 0.93256 0.99566 1.15877 0.80454 0.79436 0.83467 1.90854 1.85222 1.44846 1.20200 1.46992 1.04319 1.59620 1.22449 1.21351 0.81165 1.06092 0.91087 1.23759 1.05280 0.93600 0.99640 1.23475 1.02825 0.96873 0.99745 0.92433 0.91838 0.91278 0.89152 0.90542 0.88101 0.88215 0.87052 0.87347 0.85500 0.92066 0.86202 0.84512 0.85280 0.88241 0.87976 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.37 37.16 0.35 -0.74 16 2 C -0.12 -1.17 5.72 -26.73 -0.15 -1.33 16 3 C 0.10 0.99 3.53 -68.21 -0.24 0.75 16 4 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 5 C 0.52 7.40 7.66 -10.56 -0.08 7.32 16 6 O -0.45 -7.78 17.75 5.60 0.10 -7.68 16 7 N -0.57 -8.27 2.59 -122.02 -0.32 -8.58 16 8 C 0.17 2.51 5.82 -5.19 -0.03 2.48 16 9 C -0.08 -1.55 5.46 -104.65 -0.57 -2.12 16 10 C -0.18 -3.39 9.70 -39.54 -0.38 -3.77 16 11 C -0.08 -1.53 10.04 -39.61 -0.40 -1.92 16 12 C -0.22 -4.99 9.17 -39.40 -0.36 -5.35 16 13 C 0.15 3.69 6.65 -39.10 -0.26 3.43 16 14 O -0.18 -5.16 9.76 0.07 0.00 -5.16 16 15 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 16 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 19 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.17 -3.65 9.65 -39.39 -0.38 -4.03 16 24 C 0.70 9.88 8.21 -88.02 -0.72 9.15 16 25 O -0.54 -8.53 14.38 5.33 0.08 -8.45 16 26 N -0.60 -6.44 3.07 -164.83 -0.51 -6.94 16 27 C 0.11 0.87 4.65 -67.93 -0.32 0.55 16 28 C -0.19 -1.63 9.83 -26.69 -0.26 -1.89 16 29 C -0.19 -1.62 9.85 -26.70 -0.26 -1.89 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 4.45 -51.93 -0.23 0.22 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.37 7.80 -51.93 -0.41 0.96 16 36 H 0.10 1.42 7.94 -51.93 -0.41 1.00 16 37 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 2.69 8.06 -52.49 -0.42 2.26 16 42 H 0.14 0.73 7.35 -51.93 -0.38 0.35 16 43 H 0.13 1.54 5.51 -51.93 -0.29 1.25 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -33.63 383.89 -9.07 -42.71 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.07 Total: 6.61 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.88 Total: -9.19 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.06 Total: -40.33 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.18 Total: -21.30 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.63 -9.07 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324610558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.651 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds