Wall clock time and date at job start Wed Apr 1 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47393 * 2 1 4 4 C 1.53002 * 109.46950 * 120.00118 * 2 1 3 5 5 H 1.09002 * 109.47553 * 59.99496 * 4 2 1 6 6 C 1.52998 * 109.47241 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47306 * 184.99372 * 6 4 2 8 8 N 1.46500 * 109.47528 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 6 10 10 O 1.21573 * 119.99906 * 359.97438 * 9 8 7 11 11 C 1.47732 * 120.00084 * 179.72302 * 9 8 7 12 12 C 1.39630 * 120.10207 * 0.02562 * 11 9 8 13 13 C 1.38072 * 119.90133 * 179.78969 * 12 11 9 14 14 F 1.35100 * 119.95399 * 180.24797 * 13 12 11 15 15 C 1.38792 * 120.09639 * 0.48201 * 13 12 11 16 16 F 1.35096 * 119.89416 * 179.72491 * 15 13 12 17 17 C 1.38778 * 120.20502 * 359.74457 * 15 13 12 18 18 F 1.35098 * 119.95206 * 179.97438 * 17 15 13 19 19 C 1.38083 * 120.10006 * 0.02579 * 17 15 13 20 20 N 1.46503 * 109.46960 * 299.99447 * 4 2 1 21 21 C 1.36942 * 119.99708 * 85.00364 * 20 4 2 22 22 H 1.07999 * 119.99910 * 359.97438 * 21 20 4 23 23 C 1.38816 * 119.99737 * 180.02562 * 21 20 4 24 24 N 1.31621 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99813 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47057 * 90.00157 * 25 23 21 27 27 H 1.48507 * 109.47112 * 209.99762 * 25 23 21 28 28 H 1.48499 * 109.47535 * 329.99769 * 25 23 21 29 29 H 1.08996 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46801 * 300.00555 * 1 2 3 31 31 H 1.08997 * 109.46816 * 59.99976 * 1 2 3 32 32 H 1.09004 * 109.46801 * 239.99445 * 2 1 3 33 33 H 1.09003 * 109.47092 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46946 * 299.99171 * 3 2 1 35 35 H 1.08996 * 109.47326 * 59.99909 * 3 2 1 36 36 H 1.09003 * 109.47062 * 65.00223 * 6 4 2 37 37 H 1.08993 * 109.47193 * 305.00031 * 6 4 2 38 38 H 1.09009 * 109.47054 * 60.00359 * 7 6 4 39 39 H 1.08993 * 109.47533 * 300.00451 * 7 6 4 40 40 H 0.97000 * 119.99456 * 0.02562 * 8 7 6 41 41 H 1.08004 * 120.04737 * 359.97438 * 12 11 9 42 42 H 1.07996 * 120.05066 * 179.97438 * 19 17 15 43 43 H 0.97002 * 120.00297 * 265.00063 * 20 4 2 44 44 H 0.97000 * 119.99899 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -1.7490 1.2493 6 6 3.5700 -0.7219 1.2490 7 6 4.0799 -1.5492 2.4307 8 7 5.5449 -1.5493 2.4309 9 6 6.2187 -2.2191 3.3867 10 8 5.6108 -2.8229 4.2492 11 6 7.6960 -2.2242 3.3833 12 6 8.3964 -1.5354 2.3910 13 6 9.7771 -1.5393 2.3943 14 9 10.4558 -0.8690 1.4376 15 6 10.4688 -2.2349 3.3761 16 9 11.8197 -2.2406 3.3721 17 6 9.7769 -2.9249 4.3616 18 9 10.4554 -3.6007 5.3145 19 6 8.3961 -2.9226 4.3690 20 7 1.5517 -0.0306 2.4454 21 6 0.3101 -0.3210 2.9448 22 1 -0.3092 -1.0588 2.4566 23 6 -0.1528 0.3339 4.0779 24 7 0.6019 1.2335 4.6725 25 14 -1.8467 -0.0617 4.7587 26 1 -1.7381 -1.1667 5.7449 27 1 -2.4063 1.1423 5.4240 28 1 -2.7422 -0.4751 3.6486 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6769 1.9562 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 3.9337 0.3018 1.3384 37 1 3.9330 -1.1564 0.3177 38 1 3.7162 -2.5729 2.3414 39 1 3.7169 -1.1146 3.3620 40 1 6.0299 -1.0672 1.7429 41 1 7.8589 -0.9978 1.6238 42 1 7.8586 -3.4602 5.1361 43 1 2.1079 0.6324 2.8837 44 1 0.2786 1.6908 5.4645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331215290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:59 Heat of formation + Delta-G solvation = -141.698881 kcal Electronic energy + Delta-G solvation = -29493.546531 eV Core-core repulsion = 24803.602781 eV Total energy + Delta-G solvation = -4689.943750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -50.24324 -49.64137 -48.92232 -40.46662 -38.43226 -37.51997 -35.00538 -32.86701 -31.95599 -31.13114 -30.69004 -29.30331 -26.54377 -25.75601 -24.33373 -23.80827 -23.05545 -21.39042 -21.02184 -19.14565 -18.67534 -18.39496 -18.10111 -17.26486 -17.21978 -16.87734 -16.53638 -15.92743 -15.73864 -15.51811 -15.36913 -15.34535 -14.86282 -14.83747 -14.41594 -14.07728 -13.87152 -13.55994 -13.30830 -13.18495 -13.04821 -12.71758 -12.48564 -12.25205 -12.21046 -11.42918 -11.35866 -11.24862 -10.89902 -10.88012 -10.72886 -10.46195 -10.24513 -10.20319 -10.06163 -9.82680 -9.55674 -9.49551 -9.43813 -9.04095 -8.85150 -6.95491 -5.77147 -3.04429 -0.18263 0.19093 2.10979 2.68731 2.94299 3.13153 3.43564 3.49165 3.50561 3.56553 3.64048 3.81691 4.09277 4.30691 4.59056 4.82262 4.87167 5.07326 5.15725 5.23048 5.31116 5.40305 5.46047 5.58271 5.69683 5.76966 5.89933 5.96051 5.98657 6.11741 6.20374 6.30900 6.34263 6.43410 6.56393 6.59875 6.68346 6.82239 6.82610 7.04526 7.33482 7.35803 7.71537 8.01643 8.41079 9.52968 10.08849 10.43706 11.45253 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.002308 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.696773 B =12127.586959 C =13411.404557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.184 3.816 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.120 3.880 8 N -0.717 5.717 9 C 0.554 3.446 10 O -0.518 6.518 11 C -0.077 4.077 12 C -0.105 4.105 13 C 0.096 3.904 14 F -0.115 7.115 15 C 0.052 3.948 16 F -0.113 7.113 17 C 0.096 3.904 18 F -0.114 7.114 19 C -0.078 4.078 20 N -0.718 5.718 21 C -0.231 4.231 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.900 3.100 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.396 0.604 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.841 -5.459 -8.043 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.073 3.927 5 H 0.067 0.933 6 C -0.174 4.174 7 C -0.002 4.002 8 N -0.368 5.368 9 C 0.339 3.661 10 O -0.394 6.394 11 C -0.081 4.081 12 C -0.125 4.125 13 C 0.075 3.925 14 F -0.093 7.093 15 C 0.030 3.970 16 F -0.091 7.091 17 C 0.075 3.925 18 F -0.092 7.092 19 C -0.097 4.097 20 N -0.359 5.359 21 C -0.362 4.362 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.208 1.208 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.231 0.769 41 H 0.177 0.823 42 H 0.187 0.813 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.289 -5.955 -7.371 20.598 hybrid contribution 0.071 0.366 0.145 0.400 sum 18.360 -5.589 -7.226 20.507 Atomic orbital electron populations 1.21852 0.95297 1.00813 1.01978 1.21685 0.96652 0.96498 0.98188 1.21756 0.99344 0.96966 1.01535 1.20181 0.89137 0.95568 0.87838 0.93262 1.22117 0.98716 1.00071 0.96534 1.21586 0.76095 1.01146 1.01329 1.46047 1.08969 1.52242 1.29513 1.17781 0.85711 0.80227 0.82408 1.90874 1.69045 1.42976 1.36533 1.19785 0.94619 0.98449 0.95205 1.21327 0.91310 0.99933 0.99930 1.17104 0.89865 0.96974 0.88548 1.91602 1.79712 1.77454 1.60550 1.17801 0.78204 1.03094 0.97861 1.91584 1.26723 1.94847 1.95979 1.17159 0.89907 0.96892 0.88540 1.91602 1.79631 1.77144 1.60846 1.21297 0.90680 0.98252 0.99518 1.42405 1.17977 1.47382 1.28150 1.19177 0.92699 1.17652 1.06691 0.91069 1.24691 0.98256 0.99381 0.98517 1.69642 1.36867 1.29207 1.22273 0.86293 0.84397 0.77154 0.78976 1.21801 1.21960 1.20827 0.94190 0.89350 0.95232 0.93636 0.93976 0.94593 0.91268 0.91149 0.91876 0.91334 0.89186 0.76882 0.82335 0.81285 0.78261 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.26 37.16 0.31 -2.19 16 2 C -0.11 -1.73 2.80 -90.62 -0.25 -1.99 16 3 C -0.14 -2.15 8.68 37.15 0.32 -1.82 16 4 C 0.18 3.14 2.19 -67.93 -0.15 2.99 16 5 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 6 C -0.14 -1.80 4.36 -26.73 -0.12 -1.91 16 7 C 0.12 1.73 5.56 -4.04 -0.02 1.71 16 8 N -0.72 -7.94 5.51 -61.29 -0.34 -8.27 16 9 C 0.55 6.93 7.77 -12.38 -0.10 6.83 16 10 O -0.52 -8.74 16.34 5.30 0.09 -8.65 16 11 C -0.08 -0.71 5.87 -104.98 -0.62 -1.33 16 12 C -0.11 -0.76 9.51 -39.12 -0.37 -1.13 16 13 C 0.10 0.78 7.29 -39.44 -0.29 0.49 16 14 F -0.11 -1.01 17.17 2.25 0.04 -0.97 16 15 C 0.05 0.47 7.32 -39.18 -0.29 0.19 16 16 F -0.11 -1.15 17.08 2.25 0.04 -1.11 16 17 C 0.10 0.87 7.29 -39.44 -0.29 0.58 16 18 F -0.11 -1.12 17.17 2.25 0.04 -1.09 16 19 C -0.08 -0.71 9.57 -39.12 -0.37 -1.09 16 20 N -0.72 -15.72 3.69 -53.42 -0.20 -15.92 16 21 C -0.23 -5.83 7.57 -15.06 -0.11 -5.94 16 22 H 0.07 1.78 7.39 -52.49 -0.39 1.39 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 25 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.57 6.54 -51.93 -0.34 0.23 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.28 7.60 -51.93 -0.39 0.89 16 36 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 39 H 0.09 1.66 7.75 -51.93 -0.40 1.25 16 40 H 0.40 2.99 6.50 -40.82 -0.27 2.73 16 41 H 0.16 0.72 6.40 -52.48 -0.34 0.39 16 42 H 0.17 1.54 7.64 -52.49 -0.40 1.14 16 43 H 0.38 9.11 7.80 -40.82 -0.32 8.79 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -29.78 376.05 -7.00 -36.78 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.60 Total: 7.94 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.44 Total: -5.04 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.19 Total: -50.29 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.12 Total: -3.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.78 -7.00 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331215290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.918 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds