Wall clock time and date at job start Wed Apr 1 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47123 * 101.33742 * 3 2 1 5 5 C 1.34781 * 119.99709 * 83.63166 * 4 3 2 6 6 O 1.21351 * 119.99857 * 174.60870 * 5 4 3 7 7 C 1.49448 * 120.00173 * 354.61623 * 5 4 3 8 8 O 1.21350 * 120.00234 * 0.75173 * 7 5 4 9 9 N 1.34781 * 119.99833 * 180.74821 * 7 5 4 10 10 C 1.46501 * 119.99831 * 179.97438 * 9 7 5 11 11 C 1.50697 * 109.46953 * 180.02562 * 10 9 7 12 12 C 1.38325 * 119.96525 * 269.97614 * 11 10 9 13 13 C 1.38277 * 120.14201 * 180.02562 * 12 11 10 14 14 C 1.38129 * 120.06631 * 359.67435 * 13 12 11 15 15 C 1.38854 * 119.92666 * 0.60274 * 14 13 12 16 16 O 1.35758 * 120.07022 * 179.69744 * 15 14 13 17 17 C 1.34828 * 116.99497 * 354.34994 * 16 15 14 18 18 H 1.08003 * 120.00298 * 5.04271 * 17 16 15 19 19 C 1.38650 * 120.00089 * 185.03947 * 17 16 15 20 20 N 1.31567 * 119.99848 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00397 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47380 * 89.99975 * 21 19 17 23 23 H 1.48501 * 109.47158 * 210.00013 * 21 19 17 24 24 H 1.48504 * 109.47051 * 329.99977 * 21 19 17 25 25 C 1.38077 * 119.96668 * 90.00158 * 11 10 9 26 26 C 1.46497 * 120.00086 * 263.63219 * 4 3 2 27 27 C 1.53000 * 109.46913 * 304.52543 * 26 4 3 28 28 C 1.52997 * 109.47261 * 64.53005 * 26 4 3 29 29 H 4.40639 * 5.51531 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46857 * 341.33481 * 3 2 1 31 31 H 1.09004 * 109.46757 * 221.33948 * 3 2 1 32 32 H 0.97000 * 120.00008 * 0.02562 * 9 7 5 33 33 H 1.09003 * 109.46937 * 59.99982 * 10 9 7 34 34 H 1.08997 * 109.47106 * 300.00452 * 10 9 7 35 35 H 1.08009 * 119.93153 * 0.02562 * 12 11 10 36 36 H 1.07993 * 119.96999 * 179.97438 * 13 12 11 37 37 H 1.07996 * 120.03678 * 180.32166 * 14 13 12 38 38 H 0.96998 * 119.99868 * 180.02562 * 20 19 17 39 39 H 1.07990 * 120.03406 * 359.97438 * 25 11 10 40 40 H 1.09008 * 109.47096 * 184.52588 * 26 4 3 41 41 H 1.08997 * 109.46877 * 60.00521 * 27 26 4 42 42 H 1.09007 * 109.46479 * 179.97438 * 27 26 4 43 43 H 1.08995 * 109.47560 * 299.99853 * 27 26 4 44 44 H 1.09000 * 109.47419 * 59.99429 * 28 26 4 45 45 H 1.08997 * 109.47044 * 180.02562 * 28 26 4 46 46 H 1.09008 * 109.46725 * 299.99810 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2724 -1.3542 5 6 3.2362 1.5432 -1.7914 6 8 3.7315 1.7743 -2.8748 7 6 2.7394 2.6679 -0.9418 8 8 2.2567 2.4380 0.1476 9 7 2.8277 3.9375 -1.3855 10 6 2.3402 5.0400 -0.5528 11 6 2.5528 6.3460 -1.2739 12 6 3.7338 7.0455 -1.1025 13 6 3.9326 8.2446 -1.7620 14 6 2.9544 8.7442 -2.5995 15 6 1.7654 8.0473 -2.7690 16 8 0.7996 8.5388 -3.5867 17 6 1.0072 9.7629 -4.1123 18 1 1.9448 10.2715 -3.9428 19 6 0.0170 10.3689 -4.8704 20 7 -1.1253 9.7496 -5.0765 21 14 0.3049 12.0645 -5.5992 22 1 0.9079 11.9272 -6.9494 23 1 -0.9900 12.7836 -5.7063 24 1 1.2255 12.8308 -4.7215 25 6 1.5684 6.8436 -2.1045 26 6 3.5116 -0.8372 -2.2332 27 6 4.5634 -1.7037 -1.5378 28 6 2.2763 -1.6849 -2.5434 29 1 -1.0501 -0.0002 -0.0001 30 1 3.0098 -0.9728 0.3289 31 1 3.0090 0.7724 0.6788 32 1 3.2133 4.1212 -2.2564 33 1 2.8865 5.0520 0.3903 34 1 1.2771 4.9033 -0.3551 35 1 4.5024 6.6543 -0.4523 36 1 4.8555 8.7886 -1.6258 37 1 3.1123 9.6781 -3.1183 38 1 -1.8179 10.1734 -5.6072 39 1 0.6466 6.2970 -2.2378 40 1 3.9230 -0.4413 -3.1618 41 1 4.1519 -2.0995 -0.6093 42 1 4.8438 -2.5295 -2.1917 43 1 5.4435 -1.0998 -1.3169 44 1 1.5269 -1.0675 -3.0387 45 1 2.5571 -2.5107 -3.1970 46 1 1.8648 -2.0807 -1.6148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332701322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:23 Heat of formation + Delta-G solvation = -1.972752 kcal Electronic energy + Delta-G solvation = -28921.449723 eV Core-core repulsion = 24779.421693 eV Total energy + Delta-G solvation = -4142.028030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06555 -39.32128 -38.70232 -37.29439 -36.81399 -34.69912 -33.64588 -32.34621 -31.92495 -30.90851 -29.19702 -27.76400 -27.37173 -26.65283 -25.36294 -24.19404 -21.75547 -21.19934 -20.85170 -20.17404 -18.84789 -17.92936 -17.50656 -17.42445 -16.94107 -16.14850 -16.05359 -15.30416 -15.22868 -14.94191 -14.51742 -14.44168 -14.40754 -14.17340 -13.85138 -13.65338 -13.55790 -13.37159 -13.27718 -12.74405 -12.69409 -12.55314 -12.46410 -12.22018 -11.72402 -11.70923 -11.69127 -11.39959 -11.20932 -10.93876 -10.86544 -10.73401 -10.53879 -10.48683 -10.29457 -9.51222 -9.42663 -9.34205 -9.11744 -8.90023 -8.27642 -7.34889 -6.49921 -4.09467 1.30558 1.74018 2.11582 2.25707 2.77797 2.81109 3.09963 3.10291 3.10873 3.15748 3.56938 3.91959 4.22982 4.29719 4.47866 4.53842 4.68907 4.81651 4.86974 4.89290 5.04914 5.19385 5.20333 5.26883 5.35156 5.40339 5.48871 5.55304 5.66740 5.75817 5.76472 5.82412 5.84031 5.89039 6.04288 6.06756 6.22119 6.25656 6.52072 6.72686 6.78903 6.97147 7.14127 7.17534 7.25909 7.33968 7.54592 7.59281 7.68526 7.92230 7.94054 8.95308 9.63536 10.67779 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.002073 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.664207 B =13500.839614 C =13847.339898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.189 4.189 3 C 0.213 3.787 4 N -0.581 5.581 5 C 0.511 3.489 6 O -0.513 6.513 7 C 0.502 3.498 8 O -0.515 6.515 9 N -0.687 5.687 10 C 0.168 3.832 11 C -0.077 4.077 12 C -0.193 4.193 13 C -0.076 4.076 14 C -0.223 4.223 15 C 0.150 3.850 16 O -0.175 6.175 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.168 4.168 26 C 0.127 3.873 27 C -0.162 4.162 28 C -0.161 4.161 29 H 0.214 0.786 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.271 -20.217 9.166 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C 0.091 3.909 4 N -0.315 5.315 5 C 0.294 3.706 6 O -0.388 6.388 7 C 0.282 3.718 8 O -0.392 6.392 9 N -0.339 5.339 10 C 0.046 3.954 11 C -0.078 4.078 12 C -0.213 4.213 13 C -0.094 4.094 14 C -0.243 4.243 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.188 4.188 26 C 0.024 3.976 27 C -0.220 4.220 28 C -0.219 4.219 29 H 0.231 0.769 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.770 -20.283 9.145 23.916 hybrid contribution -0.013 1.049 -0.790 1.313 sum 8.757 -19.235 8.355 22.726 Atomic orbital electron populations 1.24864 0.95887 1.01772 0.98503 1.23157 0.94518 0.99692 1.01600 1.18806 0.84540 1.03964 0.83549 1.47903 1.63205 1.05076 1.15296 1.20337 0.79532 0.84146 0.86577 1.90774 1.42588 1.83751 1.21664 1.19987 0.80699 0.84229 0.86840 1.90725 1.43825 1.83546 1.21135 1.45999 1.60504 1.04817 1.22580 1.20297 1.00285 0.82107 0.92756 1.19195 0.94851 0.95098 0.98630 1.20474 0.97572 0.97591 1.05615 1.20747 0.97795 0.95236 0.95624 1.21257 0.95030 1.03178 1.04834 1.19313 0.88851 0.92636 0.89580 1.83985 1.38785 1.32752 1.52347 1.21328 1.02587 0.91480 1.31539 0.89003 1.25306 0.94508 0.99790 0.96889 1.70042 1.04865 1.37924 1.36687 0.85701 0.78200 0.80113 0.79357 1.19828 1.20213 1.19163 1.20083 1.00393 0.96968 1.01395 1.21266 0.95463 0.86276 0.94554 1.22166 0.98661 0.99917 1.01235 1.22155 0.97624 0.99887 1.02235 0.76912 0.88459 0.85553 0.74825 0.90264 0.90255 0.87421 0.87188 0.85394 0.91933 0.86359 0.87588 0.91981 0.90885 0.91813 0.92155 0.91158 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.19 -2.08 11.03 -37.12 -0.41 -2.49 16 3 C 0.21 1.97 4.90 -6.83 -0.03 1.93 16 4 N -0.58 -6.00 2.36 -169.92 -0.40 -6.40 16 5 C 0.51 6.69 7.67 -11.58 -0.09 6.60 16 6 O -0.51 -7.78 15.82 5.50 0.09 -7.69 16 7 C 0.50 6.88 7.72 -11.58 -0.09 6.79 16 8 O -0.52 -7.43 12.12 5.50 0.07 -7.36 16 9 N -0.69 -9.50 5.54 -61.91 -0.34 -9.84 16 10 C 0.17 2.37 5.80 -5.19 -0.03 2.34 16 11 C -0.08 -1.29 5.25 -104.65 -0.55 -1.84 16 12 C -0.19 -3.13 9.70 -39.53 -0.38 -3.51 16 13 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 14 C -0.22 -4.67 9.17 -39.39 -0.36 -5.03 16 15 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 16 O -0.18 -4.91 9.76 0.03 0.00 -4.91 16 17 C -0.39 -10.80 9.49 30.88 0.29 -10.51 16 18 H 0.09 2.32 5.21 -52.48 -0.27 2.05 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 21 Si 0.94 20.26 29.55 -169.99 -5.02 15.23 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 26 C 0.13 1.06 3.25 -67.93 -0.22 0.84 16 27 C -0.16 -0.94 9.10 37.16 0.34 -0.60 16 28 C -0.16 -1.21 8.90 37.16 0.33 -0.88 16 29 H 0.21 1.65 7.80 -54.09 -0.42 1.23 16 30 H 0.10 0.62 6.20 -51.93 -0.32 0.30 16 31 H 0.13 1.27 5.83 -51.93 -0.30 0.96 16 32 H 0.42 5.84 7.94 -40.82 -0.32 5.51 16 33 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.11 1.04 6.91 -51.92 -0.36 0.68 16 41 H 0.06 0.30 6.50 -51.93 -0.34 -0.04 16 42 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.45 7.26 -51.92 -0.38 0.07 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -32.10 393.71 -6.64 -38.74 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.95 Total: 9.66 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.77 Total: -9.10 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.01 Total: -40.50 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.15 Total: -19.96 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.10 -6.64 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332701322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.766 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds