Wall clock time and date at job start Wed Apr 1 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47123 * 101.33742 * 3 2 1 5 5 C 1.34781 * 119.99709 * 83.63166 * 4 3 2 6 6 O 1.21351 * 119.99857 * 174.60870 * 5 4 3 7 7 C 1.49448 * 120.00173 * 354.61623 * 5 4 3 8 8 O 1.21350 * 120.00234 * 0.75173 * 7 5 4 9 9 N 1.34781 * 119.99833 * 180.74821 * 7 5 4 10 10 C 1.46501 * 119.99831 * 179.97438 * 9 7 5 11 11 C 1.50697 * 109.46953 * 180.02562 * 10 9 7 12 12 C 1.38325 * 119.96525 * 269.97614 * 11 10 9 13 13 C 1.38277 * 120.14201 * 180.02562 * 12 11 10 14 14 C 1.38129 * 120.06631 * 359.67435 * 13 12 11 15 15 C 1.38854 * 119.92666 * 0.60274 * 14 13 12 16 16 O 1.35758 * 120.07022 * 179.69744 * 15 14 13 17 17 C 1.34828 * 116.99497 * 354.34994 * 16 15 14 18 18 H 1.08003 * 120.00298 * 5.04271 * 17 16 15 19 19 C 1.38650 * 120.00089 * 185.03947 * 17 16 15 20 20 N 1.31567 * 119.99848 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00397 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47380 * 89.99975 * 21 19 17 23 23 H 1.48501 * 109.47158 * 210.00013 * 21 19 17 24 24 H 1.48504 * 109.47051 * 329.99977 * 21 19 17 25 25 C 1.38077 * 119.96668 * 90.00158 * 11 10 9 26 26 C 1.46497 * 120.00086 * 263.63219 * 4 3 2 27 27 C 1.53000 * 109.46913 * 304.52543 * 26 4 3 28 28 C 1.52997 * 109.47261 * 64.53005 * 26 4 3 29 29 H 4.40639 * 5.51531 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46857 * 341.33481 * 3 2 1 31 31 H 1.09004 * 109.46757 * 221.33948 * 3 2 1 32 32 H 0.97000 * 120.00008 * 0.02562 * 9 7 5 33 33 H 1.09003 * 109.46937 * 59.99982 * 10 9 7 34 34 H 1.08997 * 109.47106 * 300.00452 * 10 9 7 35 35 H 1.08009 * 119.93153 * 0.02562 * 12 11 10 36 36 H 1.07993 * 119.96999 * 179.97438 * 13 12 11 37 37 H 1.07996 * 120.03678 * 180.32166 * 14 13 12 38 38 H 0.96998 * 119.99868 * 180.02562 * 20 19 17 39 39 H 1.07990 * 120.03406 * 359.97438 * 25 11 10 40 40 H 1.09008 * 109.47096 * 184.52588 * 26 4 3 41 41 H 1.08997 * 109.46877 * 60.00521 * 27 26 4 42 42 H 1.09007 * 109.46479 * 179.97438 * 27 26 4 43 43 H 1.08995 * 109.47560 * 299.99853 * 27 26 4 44 44 H 1.09000 * 109.47419 * 59.99429 * 28 26 4 45 45 H 1.08997 * 109.47044 * 180.02562 * 28 26 4 46 46 H 1.09008 * 109.46725 * 299.99810 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2724 -1.3542 5 6 3.2362 1.5432 -1.7914 6 8 3.7315 1.7743 -2.8748 7 6 2.7394 2.6679 -0.9418 8 8 2.2567 2.4380 0.1476 9 7 2.8277 3.9375 -1.3855 10 6 2.3402 5.0400 -0.5528 11 6 2.5528 6.3460 -1.2739 12 6 3.7338 7.0455 -1.1025 13 6 3.9326 8.2446 -1.7620 14 6 2.9544 8.7442 -2.5995 15 6 1.7654 8.0473 -2.7690 16 8 0.7996 8.5388 -3.5867 17 6 1.0072 9.7629 -4.1123 18 1 1.9448 10.2715 -3.9428 19 6 0.0170 10.3689 -4.8704 20 7 -1.1253 9.7496 -5.0765 21 14 0.3049 12.0645 -5.5992 22 1 0.9079 11.9272 -6.9494 23 1 -0.9900 12.7836 -5.7063 24 1 1.2255 12.8308 -4.7215 25 6 1.5684 6.8436 -2.1045 26 6 3.5116 -0.8372 -2.2332 27 6 4.5634 -1.7037 -1.5378 28 6 2.2763 -1.6849 -2.5434 29 1 -1.0501 -0.0002 -0.0001 30 1 3.0098 -0.9728 0.3289 31 1 3.0090 0.7724 0.6788 32 1 3.2133 4.1212 -2.2564 33 1 2.8865 5.0520 0.3903 34 1 1.2771 4.9033 -0.3551 35 1 4.5024 6.6543 -0.4523 36 1 4.8555 8.7886 -1.6258 37 1 3.1123 9.6781 -3.1183 38 1 -1.8179 10.1734 -5.6072 39 1 0.6466 6.2970 -2.2378 40 1 3.9230 -0.4413 -3.1618 41 1 4.1519 -2.0995 -0.6093 42 1 4.8438 -2.5295 -2.1917 43 1 5.4435 -1.0998 -1.3169 44 1 1.5269 -1.0675 -3.0387 45 1 2.5571 -2.5107 -3.1970 46 1 1.8648 -2.0807 -1.6148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332701322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:22 Heat of formation + Delta-G solvation = -22.439143 kcal Electronic energy + Delta-G solvation = -28922.337212 eV Core-core repulsion = 24779.421693 eV Total energy + Delta-G solvation = -4142.915519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07268 -40.88167 -39.86642 -38.51981 -38.12648 -35.91185 -34.41008 -34.29510 -32.72696 -32.32435 -30.81787 -28.49254 -28.07598 -27.88561 -27.21200 -25.30798 -23.29436 -22.52483 -22.01698 -21.04765 -19.98302 -19.35898 -18.85435 -18.43146 -18.34942 -17.17566 -17.07815 -16.76999 -16.50865 -16.25187 -16.04726 -15.66733 -15.52464 -15.28128 -15.06547 -14.97047 -14.65753 -14.37013 -14.21961 -14.04781 -13.97241 -13.69383 -13.36417 -13.31134 -13.04102 -13.01668 -12.68810 -12.54192 -12.41363 -12.31453 -12.29514 -12.12492 -11.90886 -11.34707 -11.24019 -11.14885 -10.82873 -10.54199 -10.33791 -10.08120 -9.78118 -9.05403 -8.48280 -6.16977 0.25185 0.31041 0.68553 1.15262 1.34776 1.43903 1.52298 1.82622 1.95741 2.07432 2.16563 2.59109 2.84622 3.12494 3.29153 3.35808 3.56039 3.77503 3.84855 4.06715 4.09174 4.15883 4.27691 4.27698 4.37492 4.49113 4.55185 4.61721 4.65881 4.70711 4.73333 4.90955 4.95477 4.98804 5.07967 5.10171 5.12801 5.21576 5.23172 5.31224 5.34723 5.59409 5.67401 5.69318 5.82593 6.00071 6.11084 6.16445 6.55823 6.74493 6.84390 6.96392 7.76460 8.74900 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.002073 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.664207 B =13500.839614 C =13847.339898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.209 4.209 3 C 0.210 3.790 4 N -0.571 5.571 5 C 0.508 3.492 6 O -0.542 6.542 7 C 0.504 3.496 8 O -0.522 6.522 9 N -0.688 5.688 10 C 0.174 3.826 11 C -0.064 4.064 12 C -0.166 4.166 13 C -0.070 4.070 14 C -0.233 4.233 15 C 0.111 3.889 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.181 4.181 26 C 0.120 3.880 27 C -0.155 4.155 28 C -0.155 4.155 29 H 0.233 0.767 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.414 0.586 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.036 0.964 45 H 0.090 0.910 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 -21.482 11.137 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.210 4.210 3 C 0.090 3.910 4 N -0.303 5.303 5 C 0.290 3.710 6 O -0.419 6.419 7 C 0.284 3.716 8 O -0.399 6.399 9 N -0.340 5.340 10 C 0.052 3.948 11 C -0.065 4.065 12 C -0.185 4.185 13 C -0.088 4.088 14 C -0.252 4.252 15 C 0.060 3.940 16 O -0.139 6.139 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.201 4.201 26 C 0.019 3.981 27 C -0.213 4.213 28 C -0.213 4.213 29 H 0.249 0.751 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.250 0.750 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.109 0.891 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.651 -21.605 11.175 26.970 hybrid contribution -0.720 1.161 -1.155 1.788 sum 10.931 -20.445 10.020 25.256 Atomic orbital electron populations 1.25547 0.96862 1.01562 0.98062 1.23641 0.95358 1.00007 1.02024 1.18990 0.83790 1.05595 0.82649 1.48046 1.61758 1.04609 1.15888 1.20267 0.79629 0.84921 0.86158 1.90762 1.44258 1.84232 1.22694 1.20113 0.80416 0.84253 0.86779 1.90729 1.44069 1.83669 1.21412 1.45938 1.60625 1.04928 1.22524 1.20252 1.00600 0.80764 0.93151 1.19439 0.94046 0.95989 0.97005 1.21037 0.97484 0.96168 1.03807 1.21185 0.98106 0.95644 0.93884 1.21396 0.95111 1.03011 1.05720 1.19868 0.89446 0.94125 0.90534 1.83951 1.41209 1.33621 1.55143 1.21834 1.03321 0.91925 1.31796 0.87868 1.26610 0.94011 1.04310 0.97231 1.70193 1.06362 1.40381 1.39037 0.84581 0.78463 0.74419 0.78723 1.18857 1.19728 1.17458 1.20243 1.01290 0.96321 1.02251 1.21478 0.96635 0.85997 0.93993 1.22132 0.97436 0.99719 1.01963 1.22116 0.96560 0.99888 1.02721 0.75073 0.85092 0.86119 0.74959 0.87781 0.90785 0.83049 0.83202 0.86104 0.91872 0.87494 0.89335 0.90475 0.89151 0.92233 0.94472 0.89083 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.06 19.25 74.32 1.43 -2.63 16 2 C -0.21 -4.33 11.03 31.13 0.34 -3.98 16 3 C 0.21 3.48 4.90 84.58 0.41 3.89 16 4 N -0.57 -11.07 2.36 -809.88 -1.91 -12.98 16 5 C 0.51 12.97 7.67 87.27 0.67 13.64 16 6 O -0.54 -16.44 15.82 -3.25 -0.05 -16.49 16 7 C 0.50 13.23 7.72 87.27 0.67 13.91 16 8 O -0.52 -14.25 12.12 -3.25 -0.04 -14.29 16 9 N -0.69 -18.11 5.54 -468.14 -2.59 -20.71 16 10 C 0.17 4.57 5.80 85.63 0.50 5.06 16 11 C -0.06 -2.04 5.25 -19.88 -0.10 -2.14 16 12 C -0.17 -4.72 9.70 22.30 0.22 -4.50 16 13 C -0.07 -2.23 10.04 22.25 0.22 -2.00 16 14 C -0.23 -9.72 9.17 22.39 0.21 -9.52 16 15 C 0.11 5.39 6.65 22.58 0.15 5.54 16 16 O -0.23 -13.92 9.76 -22.81 -0.22 -14.15 16 17 C -0.41 -23.86 9.49 67.92 0.64 -23.22 16 18 H 0.10 5.42 5.21 -2.91 -0.02 5.41 16 19 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 20 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 21 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 25 C -0.18 -7.54 9.65 22.39 0.22 -7.32 16 26 C 0.12 1.84 3.25 44.99 0.15 1.99 16 27 C -0.15 -1.37 9.10 71.98 0.66 -0.71 16 28 C -0.15 -2.09 8.90 71.98 0.64 -1.45 16 29 H 0.23 3.32 7.80 -4.41 -0.03 3.28 16 30 H 0.13 1.25 6.20 -2.39 -0.01 1.24 16 31 H 0.12 2.19 5.83 -2.38 -0.01 2.18 16 32 H 0.41 11.28 7.94 -92.71 -0.74 10.54 16 33 H 0.10 2.28 8.09 -2.39 -0.02 2.27 16 34 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.11 4.58 8.06 -2.92 -0.02 4.56 16 40 H 0.09 1.70 6.91 -2.38 -0.02 1.68 16 41 H 0.08 0.46 6.50 -2.39 -0.02 0.44 16 42 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.84 7.26 -2.38 -0.02 0.82 16 Total: -1.00 -75.70 393.71 5.27 -70.43 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.28 Total: 34.33 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 7.49 Total: -14.35 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -4.21 Total: -90.22 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.31 Total: -44.93 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -75.70 5.27 -70.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332701322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.986 kcal (2) G-P(sol) polarization free energy of solvation -75.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds