Wall clock time and date at job start Wed Apr 1 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99991 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99749 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46973 * 90.00757 * 13 11 9 15 15 H 1.48504 * 109.47082 * 210.00012 * 13 11 9 16 16 H 1.48495 * 109.47365 * 330.00420 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21567 * 119.99996 * 0.02562 * 18 17 5 20 20 C 1.47728 * 120.00121 * 179.97438 * 18 17 5 21 21 C 1.39630 * 120.09976 * 359.72412 * 20 18 17 22 22 C 1.38076 * 119.89875 * 179.79075 * 21 20 18 23 23 F 1.35103 * 119.95246 * 180.25220 * 22 21 20 24 24 C 1.38792 * 120.10045 * 0.48706 * 22 21 20 25 25 F 1.35104 * 119.89906 * 179.72359 * 24 22 21 26 26 C 1.38780 * 120.20297 * 359.74394 * 24 22 21 27 27 F 1.35098 * 119.95261 * 180.02562 * 26 24 22 28 28 C 1.38075 * 120.09824 * 0.02562 * 26 24 22 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 39 39 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 40 40 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 41 41 H 0.97001 * 120.00133 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 43 43 H 1.07998 * 120.05411 * 0.02562 * 21 20 18 44 44 H 1.07999 * 120.05053 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 1.6010 -0.5789 -7.2603 13 14 2.9074 -2.6034 -5.8909 14 1 1.9685 -3.7481 -5.7746 15 1 3.7697 -2.7900 -7.0854 16 1 3.7556 -2.5333 -4.6741 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2438 -2.7709 0.0244 20 6 1.7357 -4.4492 -0.5794 21 6 0.5659 -4.7783 -1.2671 22 6 0.1114 -6.0822 -1.2675 23 9 -1.0175 -6.4028 -1.9368 24 6 0.8100 -7.0630 -0.5774 25 9 0.3587 -8.3364 -0.5759 26 6 1.9706 -6.7397 0.1115 27 9 2.6469 -7.6985 0.7811 28 6 2.4351 -5.4394 0.1135 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 0.4437 0.0782 -2.4548 39 1 1.9647 0.9986 -2.5444 40 1 2.4217 -1.5804 -3.6010 41 1 1.8582 -1.0795 -8.0503 42 1 0.7412 -2.3303 -1.7311 43 1 0.0194 -4.0150 -1.8010 44 1 3.3381 -5.1885 0.6502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332861847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:45 Heat of formation + Delta-G solvation = -131.254544 kcal Electronic energy + Delta-G solvation = -31127.404135 eV Core-core repulsion = 26437.913285 eV Total energy + Delta-G solvation = -4689.490849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.14171 -49.53273 -48.81954 -40.78145 -38.93106 -37.37989 -34.71356 -33.70819 -31.60277 -31.08102 -30.91223 -28.24331 -27.27013 -26.92832 -24.78656 -23.85549 -23.40530 -21.52163 -21.01311 -19.19554 -18.78733 -18.29285 -18.09160 -17.61495 -17.16259 -16.75897 -16.38102 -15.84438 -15.82017 -15.81069 -15.28212 -15.25437 -14.79571 -14.74292 -14.34377 -14.24112 -13.97733 -13.67916 -13.28930 -13.14856 -12.99603 -12.85230 -12.43466 -12.29900 -12.12436 -12.03663 -11.96426 -11.64611 -11.52371 -11.31938 -10.94648 -10.88894 -10.69564 -10.40317 -10.14888 -10.09115 -9.69316 -9.45493 -9.38910 -9.01736 -8.92330 -7.34886 -5.86087 -3.22919 -0.09658 0.29450 2.17645 2.76419 3.00630 3.17369 3.28860 3.33213 3.39218 3.68091 3.73189 3.92335 4.16040 4.41460 4.50160 4.68965 4.83108 4.94583 4.96065 5.01120 5.20467 5.28984 5.33309 5.41860 5.47032 5.50952 5.61967 5.68460 5.74890 5.76624 5.88837 5.97828 6.00505 6.06631 6.14965 6.21248 6.27205 6.31755 6.43058 6.54189 6.67666 7.40553 7.88455 8.04664 8.32272 9.10467 9.82606 10.01101 11.31946 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004458 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.875642 B = 6278.867528 C = 8338.458668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.092 0.908 7 C 0.145 3.855 8 N -0.755 5.755 9 C -0.248 4.248 10 H 0.091 0.909 11 C 0.010 3.990 12 N -0.930 5.930 13 Si 0.877 3.123 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.277 1.277 17 N -0.702 5.702 18 C 0.559 3.441 19 O -0.523 6.523 20 C -0.081 4.081 21 C -0.103 4.103 22 C 0.098 3.902 23 F -0.113 7.113 24 C 0.053 3.947 25 F -0.113 7.113 26 C 0.093 3.907 27 F -0.115 7.115 28 C -0.078 4.078 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.047 0.953 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.404 0.596 43 H 0.162 0.838 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 -7.383 18.828 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.188 4.188 5 C 0.040 3.960 6 H 0.110 0.890 7 C 0.018 3.982 8 N -0.402 5.402 9 C -0.378 4.378 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.578 5.578 13 Si 0.707 3.293 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.203 1.203 17 N -0.353 5.353 18 C 0.344 3.656 19 O -0.400 6.400 20 C -0.085 4.085 21 C -0.123 4.123 22 C 0.077 3.923 23 F -0.091 7.091 24 C 0.031 3.969 25 F -0.091 7.091 26 C 0.072 3.928 27 F -0.093 7.093 28 C -0.098 4.098 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.240 0.760 43 H 0.179 0.821 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.048 -7.102 19.048 20.432 hybrid contribution 0.089 -1.894 -0.416 1.941 sum -1.959 -8.996 18.632 20.782 Atomic orbital electron populations 1.21939 0.94449 1.01666 1.02043 1.20894 0.96034 0.95812 0.94985 1.21895 1.01254 0.94698 1.02107 1.21905 1.01689 0.99529 0.95727 1.21478 1.00144 0.79294 0.95119 0.88998 1.21107 0.98128 0.94840 0.84150 1.42717 1.67725 1.27400 1.02315 1.19021 1.29787 1.07336 0.81619 0.89073 1.24646 1.00431 0.98467 0.95118 1.69687 1.50942 1.40162 0.96968 0.86662 0.80491 0.84925 0.77173 1.20967 1.21564 1.20312 1.45952 1.28917 1.08867 1.51557 1.17716 0.84094 0.83921 0.79835 1.90813 1.24089 1.81888 1.43209 1.19764 0.94908 0.95047 0.98744 1.21433 0.96555 0.94969 0.99317 1.17125 0.85939 0.92437 0.96761 1.91615 1.46887 1.93145 1.77438 1.17805 0.95610 0.80368 1.03091 1.91583 1.88256 1.34442 1.94837 1.17130 0.91394 0.87006 0.97234 1.91591 1.78317 1.61923 1.77509 1.21231 1.01201 0.88905 0.98465 0.91638 0.92911 0.92943 0.92676 0.92467 0.91672 0.93071 0.91881 0.93669 0.94330 0.93560 0.80550 0.92945 0.75960 0.82096 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.97 37.16 0.30 -1.19 16 2 C -0.08 -0.86 0.62 -154.51 -0.10 -0.96 16 3 C -0.14 -1.53 8.12 37.15 0.30 -1.23 16 4 C -0.13 -1.52 7.00 37.16 0.26 -1.26 16 5 C 0.14 1.99 1.69 -67.93 -0.11 1.88 16 6 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 7 C 0.15 2.41 5.10 -4.04 -0.02 2.39 16 8 N -0.76 -16.29 5.24 -59.90 -0.31 -16.61 16 9 C -0.25 -6.58 10.47 -15.06 -0.16 -6.74 16 10 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 11 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 12 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 13 Si 0.88 21.40 27.73 -169.99 -4.71 16.68 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 17 N -0.70 -8.96 3.59 -54.78 -0.20 -9.15 16 18 C 0.56 7.23 6.12 -12.39 -0.08 7.15 16 19 O -0.52 -7.88 13.46 5.31 0.07 -7.81 16 20 C -0.08 -0.88 5.87 -104.98 -0.62 -1.50 16 21 C -0.10 -1.04 9.51 -39.12 -0.37 -1.41 16 22 C 0.10 1.05 7.30 -39.44 -0.29 0.77 16 23 F -0.11 -1.32 17.17 2.25 0.04 -1.28 16 24 C 0.05 0.58 7.32 -39.18 -0.29 0.29 16 25 F -0.11 -1.33 17.09 2.25 0.04 -1.30 16 26 C 0.09 0.96 7.29 -39.44 -0.29 0.68 16 27 F -0.12 -1.24 17.17 2.25 0.04 -1.20 16 28 C -0.08 -0.80 9.57 -39.12 -0.37 -1.17 16 29 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.52 7.60 -51.93 -0.39 0.12 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.72 6.54 -51.93 -0.34 0.38 16 35 H 0.05 0.62 5.77 -51.93 -0.30 0.32 16 36 H 0.06 0.81 7.53 -51.93 -0.39 0.42 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.62 6.17 -51.93 -0.32 0.30 16 39 H 0.05 0.79 6.71 -51.93 -0.35 0.45 16 40 H 0.36 7.81 5.20 -40.82 -0.21 7.60 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.40 4.71 6.63 -40.82 -0.27 4.44 16 43 H 0.16 1.39 6.40 -52.49 -0.34 1.06 16 44 H 0.17 1.58 7.65 -52.49 -0.40 1.18 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -30.56 364.64 -6.01 -36.57 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.32 Total: 8.21 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.93 Total: -2.11 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.26 Total: -53.26 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.12 Total: -3.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.56 -6.01 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332861847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.683 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds