Wall clock time and date at job start Wed Apr 1 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99991 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99749 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46973 * 90.00757 * 13 11 9 15 15 H 1.48504 * 109.47082 * 210.00012 * 13 11 9 16 16 H 1.48495 * 109.47365 * 330.00420 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21567 * 119.99996 * 0.02562 * 18 17 5 20 20 C 1.47728 * 120.00121 * 179.97438 * 18 17 5 21 21 C 1.39630 * 120.09976 * 359.72412 * 20 18 17 22 22 C 1.38076 * 119.89875 * 179.79075 * 21 20 18 23 23 F 1.35103 * 119.95246 * 180.25220 * 22 21 20 24 24 C 1.38792 * 120.10045 * 0.48706 * 22 21 20 25 25 F 1.35104 * 119.89906 * 179.72359 * 24 22 21 26 26 C 1.38780 * 120.20297 * 359.74394 * 24 22 21 27 27 F 1.35098 * 119.95261 * 180.02562 * 26 24 22 28 28 C 1.38075 * 120.09824 * 0.02562 * 26 24 22 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 39 39 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 40 40 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 41 41 H 0.97001 * 120.00133 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 43 43 H 1.07998 * 120.05411 * 0.02562 * 21 20 18 44 44 H 1.07999 * 120.05053 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 1.6010 -0.5789 -7.2603 13 14 2.9074 -2.6034 -5.8909 14 1 1.9685 -3.7481 -5.7746 15 1 3.7697 -2.7900 -7.0854 16 1 3.7556 -2.5333 -4.6741 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2438 -2.7709 0.0244 20 6 1.7357 -4.4492 -0.5794 21 6 0.5659 -4.7783 -1.2671 22 6 0.1114 -6.0822 -1.2675 23 9 -1.0175 -6.4028 -1.9368 24 6 0.8100 -7.0630 -0.5774 25 9 0.3587 -8.3364 -0.5759 26 6 1.9706 -6.7397 0.1115 27 9 2.6469 -7.6985 0.7811 28 6 2.4351 -5.4394 0.1135 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 0.4437 0.0782 -2.4548 39 1 1.9647 0.9986 -2.5444 40 1 2.4217 -1.5804 -3.6010 41 1 1.8582 -1.0795 -8.0503 42 1 0.7412 -2.3303 -1.7311 43 1 0.0194 -4.0150 -1.8010 44 1 3.3381 -5.1885 0.6502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332861847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:44 Heat of formation + Delta-G solvation = -148.914844 kcal Electronic energy + Delta-G solvation = -31128.169943 eV Core-core repulsion = 26437.913285 eV Total energy + Delta-G solvation = -4690.256658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.01396 -50.38629 -49.69400 -41.79146 -39.86681 -38.43062 -36.31591 -34.87719 -33.39392 -32.05987 -31.82882 -29.64420 -28.11313 -27.86540 -25.98056 -25.01818 -24.50957 -23.03517 -22.00823 -20.15963 -20.10896 -19.35587 -19.11488 -18.82037 -18.02510 -17.73511 -17.38701 -17.01891 -16.79663 -16.67338 -16.37739 -16.15132 -16.11895 -15.89031 -15.63181 -15.27116 -15.14658 -14.76809 -14.64482 -14.44258 -14.07977 -13.89637 -13.77733 -13.33821 -13.16013 -13.04224 -12.99064 -12.89856 -12.76433 -12.50326 -12.32225 -12.17380 -12.02908 -11.82145 -11.60954 -11.28517 -11.19581 -10.94095 -10.29499 -10.25998 -9.98521 -9.27827 -8.01597 -5.34338 -0.96159 -0.51705 1.27002 1.35412 1.38530 1.45139 1.82900 2.10493 2.24334 2.46981 2.83598 2.87959 3.10530 3.23072 3.31036 3.49744 3.61381 3.80729 4.04465 4.05259 4.09726 4.13909 4.31176 4.39923 4.45571 4.49183 4.63877 4.68967 4.87581 4.88292 4.90672 5.01116 5.09445 5.13104 5.16958 5.22984 5.27772 5.33334 5.42492 5.57422 5.61687 5.79599 6.21753 6.39542 7.03839 7.09071 7.84371 8.01909 9.19742 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004458 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.875642 B = 6278.867528 C = 8338.458668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.123 4.123 5 C 0.154 3.846 6 H 0.073 0.927 7 C 0.145 3.855 8 N -0.756 5.756 9 C -0.226 4.226 10 H 0.064 0.936 11 C -0.056 4.056 12 N -0.981 5.981 13 Si 0.940 3.060 14 H -0.271 1.271 15 H -0.302 1.302 16 H -0.261 1.261 17 N -0.701 5.701 18 C 0.562 3.438 19 O -0.545 6.545 20 C -0.085 4.085 21 C -0.091 4.091 22 C 0.094 3.906 23 F -0.119 7.119 24 C 0.052 3.948 25 F -0.119 7.119 26 C 0.095 3.905 27 F -0.117 7.117 28 C -0.067 4.067 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.364 0.636 41 H 0.256 0.744 42 H 0.411 0.589 43 H 0.176 0.824 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -8.079 20.788 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.181 4.181 5 C 0.049 3.951 6 H 0.091 0.909 7 C 0.019 3.981 8 N -0.402 5.402 9 C -0.357 4.357 10 H 0.082 0.918 11 C -0.248 4.248 12 N -0.631 5.631 13 Si 0.768 3.232 14 H -0.197 1.197 15 H -0.229 1.229 16 H -0.186 1.186 17 N -0.352 5.352 18 C 0.348 3.652 19 O -0.424 6.424 20 C -0.089 4.089 21 C -0.111 4.111 22 C 0.073 3.927 23 F -0.097 7.097 24 C 0.030 3.970 25 F -0.098 7.098 26 C 0.074 3.926 27 F -0.096 7.096 28 C -0.087 4.087 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.197 0.803 41 H 0.065 0.935 42 H 0.248 0.752 43 H 0.194 0.806 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.249 -7.800 21.069 22.579 hybrid contribution 0.116 -1.588 -0.953 1.856 sum -2.133 -9.388 20.116 22.301 Atomic orbital electron populations 1.21919 0.93208 1.02222 1.02512 1.20853 0.96924 0.95766 0.93602 1.21899 1.00967 0.94358 1.02712 1.21812 1.00586 0.99435 0.96247 1.21265 0.99002 0.79980 0.94804 0.90872 1.21261 0.98817 0.94542 0.83525 1.42707 1.67585 1.27825 1.02100 1.19015 1.27475 1.05691 0.83515 0.91817 1.25347 1.02499 1.02111 0.94829 1.69855 1.53431 1.42029 0.97834 0.85635 0.79213 0.81288 0.77027 1.19657 1.22867 1.18625 1.45904 1.29140 1.08491 1.51714 1.17881 0.83616 0.84439 0.79215 1.90812 1.25092 1.82342 1.44172 1.19559 0.95503 0.94059 0.99759 1.21516 0.96022 0.94973 0.98542 1.17127 0.85903 0.92614 0.97030 1.91603 1.47238 1.93214 1.77630 1.17924 0.95775 0.80146 1.03140 1.91568 1.88367 1.34941 1.94889 1.17052 0.91235 0.86994 0.97269 1.91589 1.78351 1.62040 1.77574 1.21273 1.01116 0.88523 0.97770 0.92198 0.91431 0.92372 0.90924 0.93009 0.92228 0.93531 0.93492 0.92089 0.93012 0.93739 0.80316 0.93457 0.75197 0.80639 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.97 71.98 0.57 -1.95 16 2 C -0.07 -1.44 0.62 -52.18 -0.03 -1.48 16 3 C -0.14 -2.78 8.12 71.98 0.58 -2.19 16 4 C -0.12 -2.58 7.00 71.98 0.50 -2.07 16 5 C 0.15 4.01 1.69 44.99 0.08 4.08 16 6 H 0.07 2.22 7.58 -2.39 -0.02 2.21 16 7 C 0.14 4.60 5.10 86.38 0.44 5.04 16 8 N -0.76 -31.61 5.24 -343.43 -1.80 -33.41 16 9 C -0.23 -11.96 10.47 84.03 0.88 -11.08 16 10 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 11 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 12 N -0.98 -60.74 13.97 21.65 0.30 -60.43 16 13 Si 0.94 43.86 27.73 68.60 1.90 45.76 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 16 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 17 N -0.70 -16.37 3.59 -445.51 -1.60 -17.97 16 18 C 0.56 13.36 6.12 86.75 0.53 13.89 16 19 O -0.55 -15.54 13.46 -3.93 -0.05 -15.60 16 20 C -0.09 -1.67 5.87 -20.10 -0.12 -1.78 16 21 C -0.09 -1.61 9.51 22.57 0.21 -1.40 16 22 C 0.09 1.83 7.30 22.36 0.16 2.00 16 23 F -0.12 -2.57 17.17 44.97 0.77 -1.80 16 24 C 0.05 1.04 7.32 22.53 0.16 1.21 16 25 F -0.12 -2.66 17.09 44.97 0.77 -1.90 16 26 C 0.09 1.80 7.29 22.36 0.16 1.96 16 27 F -0.12 -2.34 17.17 44.97 0.77 -1.57 16 28 C -0.07 -1.22 9.57 22.57 0.22 -1.01 16 29 H 0.06 1.14 6.32 -2.39 -0.02 1.13 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.97 7.60 -2.38 -0.02 0.95 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.23 6.54 -2.39 -0.02 1.21 16 35 H 0.05 1.01 5.77 -2.39 -0.01 1.00 16 36 H 0.05 1.14 7.53 -2.39 -0.02 1.12 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.57 6.17 -2.38 -0.01 1.55 16 39 H 0.04 1.48 6.71 -2.39 -0.02 1.46 16 40 H 0.36 14.97 5.20 -92.71 -0.48 14.48 16 41 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.41 8.50 6.63 -92.71 -0.61 7.89 16 43 H 0.18 2.54 6.40 -2.91 -0.02 2.52 16 44 H 0.18 2.95 7.65 -2.91 -0.02 2.93 16 Total: -1.00 -65.20 364.64 5.82 -59.38 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.08 Total: 24.99 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.83 Total: 2.54 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -3.10 Total: -111.82 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.05 Total: -15.60 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 2.31 Total: -5.26 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Total: -65.20 5.82 -59.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332861847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.530 kcal (2) G-P(sol) polarization free energy of solvation -65.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds