Wall clock time and date at job start Wed Apr 1 2020 02:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47369 * 120.00131 * 2 1 3 5 5 O 1.21277 * 120.00620 * 119.99796 * 4 2 1 6 6 N 1.34780 * 119.99786 * 300.00156 * 4 2 1 7 7 C 1.46496 * 120.00061 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47151 * 180.02562 * 7 6 4 9 9 C 1.38221 * 120.01073 * 260.01872 * 8 7 6 10 10 C 1.38220 * 120.02576 * 179.72487 * 9 8 7 11 11 C 1.38277 * 120.04953 * 0.51339 * 10 9 8 12 12 C 1.50700 * 119.98580 * 179.77046 * 11 10 9 13 13 N 1.46498 * 109.46769 * 269.71637 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72432 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.38170 * 120.02576 * 359.48562 * 11 10 9 23 23 C 1.38441 * 120.01389 * 80.00236 * 8 7 6 24 24 F 1.35100 * 120.02602 * 359.97438 * 23 8 7 25 25 C 1.53003 * 109.47213 * 240.00001 * 2 1 3 26 26 F 1.39898 * 109.47048 * 300.00043 * 25 2 1 27 27 F 1.39900 * 109.46894 * 60.00428 * 25 2 1 28 28 H 1.09005 * 109.47247 * 300.00034 * 1 2 3 29 29 H 1.09004 * 109.46717 * 59.99785 * 1 2 3 30 30 H 1.08995 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47101 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47573 * 300.00008 * 3 2 1 33 33 H 1.08999 * 109.47229 * 60.00547 * 3 2 1 34 34 H 0.97003 * 120.00316 * 359.97438 * 6 4 2 35 35 H 1.09000 * 109.47450 * 60.00120 * 7 6 4 36 36 H 1.09004 * 109.47141 * 299.99581 * 7 6 4 37 37 H 1.07997 * 119.98840 * 359.97438 * 9 8 7 38 38 H 1.07998 * 119.98077 * 180.25523 * 10 9 8 39 39 H 1.09004 * 109.47210 * 149.71995 * 12 11 10 40 40 H 1.08994 * 109.47121 * 29.71965 * 12 11 10 41 41 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 42 42 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 43 43 H 1.07998 * 120.01636 * 180.23671 * 22 11 10 44 44 H 1.09000 * 109.47258 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9408 3.6507 8 6 1.6918 -0.2308 4.8812 9 6 2.5214 0.6372 5.5659 10 6 2.0587 1.2930 6.6912 11 6 0.7692 1.0736 7.1394 12 6 0.2679 1.7854 8.3695 13 7 0.5502 0.9709 9.5540 14 6 0.1880 1.4201 10.7960 15 1 -0.3097 2.3727 10.9017 16 6 0.4607 0.6510 11.9189 17 7 0.1121 1.0825 13.1125 18 14 1.3222 -0.9963 11.7361 19 1 2.7916 -0.7986 11.8207 20 1 0.8821 -1.9083 12.8222 21 1 0.9779 -1.5917 10.4199 22 6 -0.0619 0.2063 6.4565 23 6 0.3988 -0.4473 5.3259 24 9 -0.4132 -1.2948 4.6569 25 6 2.0400 -0.7213 -1.2493 26 9 1.5737 -2.0402 -1.2493 27 9 1.5737 -0.0617 -2.3915 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.1493 0.5389 2.5436 35 1 3.2846 -0.9413 3.6509 36 1 1.8308 -1.9684 3.6506 37 1 3.5302 0.8062 5.2193 38 1 2.7062 1.9742 7.2233 39 1 -0.8073 1.9434 8.2851 40 1 0.7704 2.7481 8.4623 41 1 0.9976 0.1155 9.4591 42 1 0.3023 0.5449 13.8972 43 1 -1.0703 0.0380 6.8045 44 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333478476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:46 Heat of formation + Delta-G solvation = -155.635398 kcal Electronic energy + Delta-G solvation = -29674.718525 eV Core-core repulsion = 24984.170442 eV Total energy + Delta-G solvation = -4690.548083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.34491 -49.00535 -47.28499 -40.55731 -39.35768 -35.93877 -35.78042 -34.59509 -32.24332 -30.83933 -30.52198 -28.08397 -27.65460 -26.79407 -24.94805 -23.07039 -22.98313 -22.14387 -20.98081 -20.21874 -18.50200 -18.05045 -17.64041 -17.38014 -16.81637 -16.71282 -16.59619 -16.02708 -15.63635 -15.50817 -15.25131 -14.69227 -14.56443 -14.26321 -14.11666 -13.85757 -13.80948 -13.64405 -13.53518 -13.47794 -13.08887 -12.96403 -12.85352 -12.75297 -12.62079 -12.45433 -12.28012 -12.10332 -11.87112 -11.69260 -11.45941 -11.15112 -10.93901 -10.79918 -10.30428 -10.22516 -9.69035 -9.52930 -9.03341 -9.01719 -8.73274 -7.36628 -5.85893 -3.23459 0.89591 1.11989 2.11639 2.59255 3.21862 3.32184 3.35767 3.40198 3.48257 3.75814 3.92543 3.93085 4.09682 4.24012 4.35667 4.51487 4.57442 4.59051 4.72505 4.88061 4.93692 4.97404 5.05712 5.09808 5.15201 5.26290 5.32554 5.38602 5.43518 5.47028 5.57053 5.57781 5.73421 5.88044 5.90452 5.95128 6.16709 6.18545 6.34811 6.70723 6.79408 6.97729 7.68605 7.87395 8.32072 9.09595 9.81718 10.00146 11.31839 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.002043 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.954230 B =13702.559304 C =13910.106210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.144 4.144 4 C 0.529 3.471 5 O -0.529 6.529 6 N -0.715 5.715 7 C 0.167 3.833 8 C -0.159 4.159 9 C -0.075 4.075 10 C -0.117 4.117 11 C -0.042 4.042 12 C 0.189 3.811 13 N -0.750 5.750 14 C -0.250 4.250 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.141 4.141 23 C 0.111 3.889 24 F -0.138 7.138 25 C 0.287 3.713 26 F -0.192 7.192 27 F -0.201 7.201 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.403 0.597 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.140 0.860 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 1.172 -29.612 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.201 4.201 4 C 0.313 3.687 5 O -0.405 6.405 6 N -0.367 5.367 7 C 0.045 3.955 8 C -0.160 4.160 9 C -0.093 4.093 10 C -0.135 4.135 11 C -0.042 4.042 12 C 0.062 3.938 13 N -0.396 5.396 14 C -0.380 4.380 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.577 5.577 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.160 4.160 23 C 0.091 3.909 24 F -0.116 7.116 25 C 0.233 3.767 26 F -0.173 7.173 27 F -0.182 7.182 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.196 0.804 42 H 0.071 0.929 43 H 0.158 0.842 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.662 0.541 -29.531 29.901 hybrid contribution 0.040 -1.086 0.030 1.087 sum 4.702 -0.545 -29.501 29.878 Atomic orbital electron populations 1.21885 0.90263 1.04150 1.04120 1.21894 1.00193 0.98521 0.93310 1.21876 1.02179 0.91574 1.04494 1.19929 0.80321 0.84239 0.84181 1.90776 1.37632 1.25558 1.86568 1.45970 1.53677 1.32104 1.04965 1.20085 0.99542 0.95733 0.80151 1.19738 0.93649 1.02964 0.99682 1.20937 0.99184 0.94452 0.94744 1.21263 0.95630 1.00440 0.96201 1.20323 0.93259 0.94656 0.96000 1.19702 0.98210 0.93321 0.82545 1.42663 1.73015 1.21475 1.02443 1.19027 1.32817 1.04365 0.81763 0.88993 1.24663 1.00725 0.98304 0.95096 1.69693 1.52003 1.38663 0.97377 0.86573 0.79919 0.85085 0.77121 1.20921 1.21557 1.20279 1.21189 1.02078 0.98159 0.94583 1.17553 0.88337 0.92108 0.92860 1.91500 1.72234 1.68415 1.79456 1.21447 0.98228 0.75153 0.81915 1.93012 1.90817 1.36894 1.96568 1.92975 1.91215 1.81020 1.53030 0.90748 0.90263 0.90974 0.91161 0.90070 0.90508 0.76182 0.89844 0.90165 0.84947 0.84683 0.94210 0.93956 0.80388 0.92891 0.84243 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.13 37.16 0.30 -0.61 16 2 C -0.14 -0.93 0.58 -155.66 -0.09 -1.02 16 3 C -0.14 -0.62 8.25 37.16 0.31 -0.32 16 4 C 0.53 4.99 6.36 -10.98 -0.07 4.92 16 5 O -0.53 -6.97 15.41 5.56 0.09 -6.88 16 6 N -0.72 -5.88 5.33 -61.47 -0.33 -6.21 16 7 C 0.17 1.62 5.52 -5.20 -0.03 1.59 16 8 C -0.16 -1.67 5.25 -104.55 -0.55 -2.21 16 9 C -0.07 -0.74 9.67 -39.59 -0.38 -1.13 16 10 C -0.12 -1.40 9.70 -39.57 -0.38 -1.79 16 11 C -0.04 -0.59 5.25 -104.63 -0.55 -1.14 16 12 C 0.19 3.32 6.38 -5.19 -0.03 3.29 16 13 N -0.75 -16.99 5.40 -61.09 -0.33 -17.32 16 14 C -0.25 -6.84 10.47 -15.06 -0.16 -7.00 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 18 Si 0.88 21.72 27.74 -169.99 -4.71 17.00 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 22 C -0.14 -1.91 9.68 -39.51 -0.38 -2.29 16 23 C 0.11 1.37 7.25 -39.41 -0.29 1.09 16 24 F -0.14 -1.77 16.66 2.25 0.04 -1.74 16 25 C 0.29 2.33 3.79 37.16 0.14 2.47 16 26 F -0.19 -2.15 15.90 2.25 0.04 -2.12 16 27 F -0.20 -1.64 16.30 2.25 0.04 -1.61 16 28 H 0.07 0.37 7.57 -51.93 -0.39 -0.02 16 29 H 0.08 0.43 7.80 -51.93 -0.41 0.02 16 30 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.30 7.80 -51.93 -0.41 -0.10 16 33 H 0.08 0.25 7.56 -51.93 -0.39 -0.14 16 34 H 0.40 2.58 7.30 -40.82 -0.30 2.28 16 35 H 0.08 0.75 8.01 -51.93 -0.42 0.34 16 36 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 37 H 0.13 0.99 8.04 -52.49 -0.42 0.57 16 38 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.36 8.20 5.52 -40.82 -0.23 7.97 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 44 H 0.12 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -33.09 379.46 -6.84 -39.93 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.89 Total: 5.04 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.26 Total: -4.01 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.12 Total: -51.35 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: 0.09 Total: -6.88 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.09 -6.84 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333478476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.705 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds