Wall clock time and date at job start Wed Apr 1 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99985 * 2 1 4 4 C 1.52998 * 109.46708 * 124.99961 * 3 2 1 5 5 C 1.53009 * 109.46909 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47157 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.53288 * 52.17211 * 6 5 4 8 8 N 1.47311 * 110.60434 * 289.17588 * 6 5 4 9 9 C 1.34524 * 106.61943 * 241.47730 * 8 6 5 10 10 O 1.21536 * 123.76941 * 180.02562 * 9 8 6 11 11 N 1.33790 * 112.45784 * 359.97438 * 9 8 6 12 12 C 1.46500 * 124.17502 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47341 * 270.04294 * 12 11 9 14 14 C 1.38321 * 119.96688 * 89.99843 * 13 12 11 15 15 C 1.38276 * 120.14054 * 180.02562 * 14 13 12 16 16 C 1.38125 * 120.06844 * 359.97438 * 15 14 13 17 17 C 1.38855 * 119.93021 * 0.02562 * 16 15 14 18 18 O 1.35753 * 120.06537 * 180.02562 * 17 16 15 19 19 C 1.34821 * 117.00468 * 354.46455 * 18 17 16 20 20 H 1.08001 * 119.99831 * 5.05524 * 19 18 17 21 21 C 1.38658 * 120.00498 * 185.05768 * 19 18 17 22 22 N 1.31561 * 119.99480 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00116 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46878 * 89.99945 * 23 21 19 25 25 H 1.48504 * 109.46496 * 209.99734 * 23 21 19 26 26 H 1.48500 * 109.47186 * 329.99878 * 23 21 19 27 27 C 1.38082 * 119.96518 * 269.73109 * 13 12 11 28 28 C 1.34763 * 111.64633 * 0.02562 * 11 9 8 29 29 O 1.21229 * 127.15845 * 179.97438 * 28 11 9 30 30 H 1.07994 * 119.99599 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99867 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99872 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46672 * 5.00183 * 3 2 1 34 34 H 1.08999 * 109.47351 * 244.99904 * 3 2 1 35 35 H 1.08999 * 109.47619 * 299.99767 * 4 3 2 36 36 H 1.08997 * 109.47373 * 60.00651 * 4 3 2 37 37 H 1.08999 * 109.46839 * 300.00305 * 5 4 3 38 38 H 1.09007 * 109.46605 * 60.00018 * 5 4 3 39 39 H 0.96999 * 126.68860 * 61.44724 * 8 6 5 40 40 H 1.09004 * 109.47354 * 30.04470 * 12 11 9 41 41 H 1.09003 * 109.47358 * 150.04690 * 12 11 9 42 42 H 1.08007 * 119.93036 * 359.97438 * 14 13 12 43 43 H 1.08005 * 119.96727 * 180.02562 * 15 14 13 44 44 H 1.08005 * 120.03217 * 180.02562 * 16 15 14 45 45 H 0.97000 * 119.99773 * 180.02562 * 22 21 19 46 46 H 1.07993 * 120.03647 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8006 2.6578 1.1813 6 6 4.7716 2.6860 2.3633 7 1 5.3945 1.7916 2.3677 8 7 4.0379 2.8167 3.6340 9 6 4.4425 3.9705 4.1950 10 8 4.0302 4.3845 5.2607 11 7 5.3504 4.6106 3.4493 12 6 5.9629 5.8897 3.8166 13 6 5.1307 7.0207 3.2696 14 6 4.1072 7.5562 4.0305 15 6 3.3410 8.5936 3.5319 16 6 3.5962 9.0989 2.2719 17 6 4.6229 8.5636 1.5056 18 8 4.8764 9.0584 0.2672 19 6 4.0244 9.9899 -0.2060 20 1 3.2343 10.3693 0.4250 21 6 4.1624 10.4609 -1.5028 22 7 5.1251 9.9991 -2.2714 23 14 2.9822 11.7521 -2.1581 24 1 3.5220 13.1060 -1.8736 25 1 2.8250 11.5800 -3.6248 26 1 1.6616 11.5968 -1.4970 27 6 5.3943 7.5251 2.0115 28 6 5.6309 3.9339 2.3181 29 8 6.4085 4.2564 1.4458 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8501 -0.9354 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6214 1.4026 -0.9314 35 1 2.4773 1.2355 2.1130 36 1 3.7400 0.5065 1.0920 37 1 4.3584 2.7548 0.2499 38 1 3.0958 3.4846 1.2707 39 1 3.3891 2.1927 3.9954 40 1 6.0151 5.9691 4.9025 41 1 6.9686 5.9440 3.3997 42 1 3.9055 7.1625 5.0158 43 1 2.5428 9.0099 4.1285 44 1 2.9976 9.9096 1.8832 45 1 5.2219 10.3288 -3.1784 46 1 6.1966 7.1098 1.4198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334356141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:19 Heat of formation + Delta-G solvation = -56.804285 kcal Electronic energy + Delta-G solvation = -29594.516349 eV Core-core repulsion = 25450.110645 eV Total energy + Delta-G solvation = -4144.405704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.47728 -40.83072 -39.68261 -38.60818 -37.83065 -36.84163 -35.89325 -34.32376 -33.36617 -32.28956 -30.84775 -29.52696 -28.02943 -27.20767 -25.71723 -23.96921 -23.17501 -22.90072 -22.17213 -21.43578 -20.58791 -19.65385 -19.14758 -18.74798 -17.98524 -17.59793 -16.80690 -16.76983 -16.57624 -16.38215 -16.20894 -16.14102 -15.77544 -15.55575 -15.30946 -15.19449 -14.80327 -14.58550 -14.40879 -14.19161 -14.00298 -13.66292 -13.26334 -13.12599 -13.09735 -12.72817 -12.60800 -12.55548 -12.45435 -12.30382 -12.13927 -12.03396 -11.75700 -11.55714 -11.34318 -11.17375 -10.88624 -10.83042 -10.46246 -10.15985 -9.82929 -9.08168 -8.48705 -6.17903 0.25944 0.58837 0.64898 1.31747 1.33656 1.43670 1.45376 1.51399 1.95793 2.15821 2.18386 2.77800 2.94005 3.12107 3.35742 3.54663 3.73642 3.83644 3.96576 4.00762 4.10300 4.16568 4.26904 4.34645 4.37773 4.46397 4.51626 4.57246 4.58167 4.65334 4.68838 4.71356 4.87762 4.94422 5.03791 5.08693 5.09009 5.20235 5.26673 5.38523 5.56622 5.64227 5.65713 5.79774 5.84170 5.94629 5.98913 6.04596 6.11210 6.36756 6.95193 7.12134 7.75012 8.74389 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008291 B = 0.003179 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.534284 B = 8806.889520 C =10768.717576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.102 4.102 4 C -0.100 4.100 5 C -0.120 4.120 6 C 0.110 3.890 7 H 0.170 0.830 8 N -0.702 5.702 9 C 0.701 3.299 10 O -0.571 6.571 11 N -0.574 5.574 12 C 0.166 3.834 13 C -0.072 4.072 14 C -0.166 4.166 15 C -0.073 4.073 16 C -0.232 4.232 17 C 0.112 3.888 18 O -0.230 6.230 19 C -0.415 4.415 20 H 0.102 0.898 21 C -0.022 4.022 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.177 4.177 28 C 0.512 3.488 29 O -0.494 6.494 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.453 0.547 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.123 0.877 45 H 0.273 0.727 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 -20.842 10.626 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.172 4.172 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.159 4.159 6 C 0.002 3.998 7 H 0.187 0.813 8 N -0.368 5.368 9 C 0.402 3.598 10 O -0.447 6.447 11 N -0.319 5.319 12 C 0.045 3.955 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.091 4.091 16 C -0.252 4.252 17 C 0.062 3.938 18 O -0.137 6.137 19 C -0.491 4.491 20 H 0.119 0.881 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.176 1.176 27 C -0.197 4.197 28 C 0.301 3.699 29 O -0.365 6.365 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.300 0.700 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.141 0.859 45 H 0.082 0.918 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.983 -20.409 10.371 23.429 hybrid contribution -0.525 0.848 -0.690 1.213 sum -5.508 -19.560 9.681 22.509 Atomic orbital electron populations 1.24013 0.96397 1.02144 1.01741 1.23065 0.96005 0.98698 0.99384 1.20801 0.98367 0.95449 0.99322 1.21461 0.97899 0.95614 0.98747 1.21842 0.97506 1.00283 0.96238 1.22228 0.93747 0.97734 0.86061 0.81308 1.45441 1.46695 1.22832 1.21794 1.15963 0.79064 0.81542 0.83234 1.90971 1.61005 1.70589 1.22100 1.46521 1.40712 1.22388 1.22306 1.20548 0.95367 0.76968 1.02608 1.19730 0.97605 0.97083 0.92868 1.20964 0.97364 0.99162 1.01047 1.21148 0.98749 0.95425 0.93745 1.21355 1.01742 1.04926 0.97147 1.19832 0.94514 0.93223 0.86253 1.83956 1.49885 1.52568 1.27286 1.21827 1.11556 1.17337 0.98405 0.88060 1.26614 0.99593 1.00944 0.94824 1.70199 1.32778 1.43844 1.08919 0.84586 0.77351 0.76510 0.77748 1.18722 1.19518 1.17615 1.20206 1.03073 0.98967 0.97483 1.21601 0.81910 0.86235 0.80167 1.90835 1.35669 1.72613 1.37392 0.89275 0.87539 0.85873 0.92680 0.90893 0.90500 0.88831 0.89666 0.92585 0.69984 0.85796 0.87667 0.84319 0.83528 0.85917 0.91799 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.65 14.32 67.77 0.97 -1.68 16 2 C -0.15 -1.84 9.52 25.64 0.24 -1.60 16 3 C -0.10 -1.36 5.66 29.85 0.17 -1.19 16 4 C -0.10 -0.97 5.13 30.60 0.16 -0.81 16 5 C -0.12 -1.88 4.96 30.60 0.15 -1.72 16 6 C 0.11 1.66 3.64 44.37 0.16 1.82 16 7 H 0.17 1.25 8.14 -2.39 -0.02 1.23 16 8 N -0.70 -10.56 6.06 -459.63 -2.79 -13.35 16 9 C 0.70 16.98 8.62 179.44 1.55 18.53 16 10 O -0.57 -17.01 17.48 -3.83 -0.07 -17.08 16 11 N -0.57 -15.13 2.59 -777.22 -2.01 -17.14 16 12 C 0.17 4.66 5.82 85.63 0.50 5.16 16 13 C -0.07 -2.58 5.46 -19.88 -0.11 -2.68 16 14 C -0.17 -5.65 9.70 22.30 0.22 -5.44 16 15 C -0.07 -2.62 10.04 22.25 0.22 -2.39 16 16 C -0.23 -10.38 9.17 22.39 0.21 -10.17 16 17 C 0.11 5.78 6.65 22.58 0.15 5.93 16 18 O -0.23 -14.24 9.76 -22.68 -0.22 -14.46 16 19 C -0.42 -24.57 9.49 67.92 0.64 -23.92 16 20 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 22 N -0.92 -57.29 13.67 21.61 0.30 -57.00 16 23 Si 1.02 43.27 29.55 68.60 2.03 45.29 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 27 C -0.18 -8.01 9.64 22.39 0.22 -7.79 16 28 C 0.51 13.24 7.65 87.94 0.67 13.91 16 29 O -0.49 -16.63 17.76 -2.87 -0.05 -16.68 16 30 H 0.09 1.25 7.84 -2.91 -0.02 1.22 16 31 H 0.11 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.05 0.88 7.79 -2.39 -0.02 0.87 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.60 7.68 -2.39 -0.02 0.58 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.45 4.16 8.61 -92.71 -0.80 3.36 16 40 H 0.12 2.95 7.80 -2.39 -0.02 2.93 16 41 H 0.11 2.86 7.94 -2.39 -0.02 2.84 16 42 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 44 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -80.45 396.99 3.98 -76.47 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.21 Total: 28.81 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 6.59 Total: -14.86 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -4.50 Total: -87.49 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.34 Total: -48.22 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -80.45 3.98 -76.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334356141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.667 kcal (2) G-P(sol) polarization free energy of solvation -80.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds