Wall clock time and date at job start Wed Apr 1 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46879 * 230.50497 * 3 2 1 5 5 O 1.42901 * 109.44914 * 65.03812 * 4 3 2 6 6 C 1.53043 * 109.45797 * 185.00380 * 4 3 2 7 7 C 1.53189 * 109.31261 * 181.38910 * 6 4 3 8 8 N 1.46934 * 108.77445 * 305.36110 * 7 6 4 9 9 C 1.34769 * 120.63145 * 233.59008 * 8 7 6 10 10 O 1.21594 * 120.00319 * 5.28868 * 9 8 7 11 11 N 1.34782 * 120.00181 * 185.29680 * 9 8 7 12 12 C 1.40020 * 120.00154 * 175.48665 * 11 9 8 13 13 C 1.38918 * 120.00120 * 215.37027 * 12 11 9 14 14 C 1.38003 * 120.00075 * 180.27490 * 13 12 11 15 15 C 1.38907 * 119.99803 * 359.46909 * 14 13 12 16 16 O 1.35791 * 119.99806 * 180.30009 * 15 14 13 17 17 C 1.34811 * 116.99645 * 354.68736 * 16 15 14 18 18 H 1.07994 * 120.00474 * 5.03494 * 17 16 15 19 19 C 1.38629 * 119.99569 * 185.03207 * 17 16 15 20 20 N 1.31571 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47409 * 90.00032 * 21 19 17 23 23 H 1.48510 * 109.47023 * 210.00247 * 21 19 17 24 24 H 1.48505 * 109.47226 * 329.99617 * 21 19 17 25 25 C 1.38903 * 120.00267 * 0.27649 * 15 14 13 26 26 C 1.38002 * 120.00393 * 359.97438 * 25 15 14 27 27 C 1.46926 * 118.73717 * 53.86126 * 8 7 6 28 28 C 1.53039 * 109.46139 * 305.06625 * 4 3 2 29 29 H 4.44652 * 5.63348 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47215 * 110.50307 * 3 2 1 31 31 H 1.08992 * 109.47051 * 350.50774 * 3 2 1 32 32 H 0.96705 * 113.99761 * 299.95976 * 5 4 3 33 33 H 1.08993 * 109.50085 * 61.42984 * 6 4 3 34 34 H 1.09004 * 109.49612 * 301.33178 * 6 4 3 35 35 H 1.08997 * 109.59007 * 185.57785 * 7 6 4 36 36 H 1.09002 * 109.59103 * 65.14657 * 7 6 4 37 37 H 0.97002 * 119.99774 * 355.47748 * 11 9 8 38 38 H 1.07999 * 119.99806 * 0.03631 * 13 12 11 39 39 H 1.08002 * 120.00122 * 179.74597 * 14 13 12 40 40 H 0.97005 * 120.00197 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.99811 * 180.02562 * 25 15 14 42 42 H 1.07998 * 120.00490 * 180.02562 * 26 25 15 43 43 H 1.08996 * 109.58944 * 65.92653 * 27 8 7 44 44 H 1.08997 * 109.58708 * 186.35683 * 27 8 7 45 45 H 1.08996 * 109.50023 * 298.57045 * 28 4 3 46 46 H 1.09003 * 109.49282 * 58.66456 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9183 1.1132 5 8 2.7782 0.3813 2.3825 6 6 4.6807 1.0171 1.0343 7 6 5.1901 1.9087 2.1711 8 7 4.4973 3.2027 2.1040 9 6 5.1961 4.3544 2.0636 10 8 6.4092 4.3271 1.9856 11 7 4.5503 5.5365 2.1100 12 6 5.2791 6.7308 2.1635 13 6 4.7997 7.8046 2.9031 14 6 5.5152 8.9836 2.9512 15 6 6.7203 9.0931 2.2691 16 8 7.4274 10.2512 2.3215 17 6 6.8532 11.2904 2.9601 18 1 5.9112 11.1565 3.4709 19 6 7.4722 12.5308 2.9612 20 7 8.6202 12.6937 2.3393 21 14 6.6770 13.9706 3.8467 22 1 7.1511 14.0095 5.2534 23 1 7.0470 15.2368 3.1645 24 1 5.2008 13.8103 3.8260 25 6 7.2024 8.0177 1.5339 26 6 6.4844 6.8403 1.4814 27 6 3.0282 3.2175 2.0877 28 6 2.5432 2.3109 0.9462 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0092 0.3608 -0.9625 31 1 3.0097 -1.0127 0.1695 32 1 1.8230 0.2904 2.5029 33 1 4.9682 1.4495 0.0760 34 1 5.1152 0.0220 1.1299 35 1 6.2635 2.0628 2.0617 36 1 4.9831 1.4327 3.1296 37 1 3.5806 5.5598 2.1061 38 1 3.8651 7.7179 3.4373 39 1 5.1404 9.8198 3.5229 40 1 9.0531 13.5618 2.3398 41 1 8.1396 8.1027 1.0039 42 1 6.8594 6.0040 0.9101 43 1 2.6485 2.8460 3.0394 44 1 2.6749 4.2353 1.9231 45 1 2.8508 2.7312 -0.0113 46 1 1.4562 2.2367 0.9790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352889149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:32 Heat of formation + Delta-G solvation = -33.491427 kcal Electronic energy + Delta-G solvation = -29170.000993 eV Core-core repulsion = 25026.606211 eV Total energy + Delta-G solvation = -4143.394782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94512 -40.76398 -39.98887 -38.25767 -36.60915 -35.49230 -34.64134 -34.15631 -32.76494 -32.00267 -31.81782 -29.86080 -28.79019 -27.28110 -25.00006 -24.54462 -23.85194 -23.00458 -21.75916 -20.72621 -19.85220 -19.44686 -18.95732 -18.88818 -17.93041 -17.44355 -16.71198 -16.64192 -16.34174 -16.05207 -15.80689 -15.71632 -15.50443 -15.31578 -15.10982 -14.85043 -14.69268 -14.53322 -14.22103 -13.99269 -13.66017 -13.52575 -13.33944 -13.16301 -13.06697 -12.89641 -12.67899 -12.47582 -12.38667 -12.19278 -12.10205 -11.82841 -11.40447 -11.29734 -11.21893 -11.00614 -10.92384 -10.66192 -10.55294 -9.82533 -9.67964 -8.55813 -8.43146 -6.10656 0.54264 0.60065 1.37884 1.46720 1.53967 1.55805 1.87264 1.95469 2.06826 2.20707 2.83387 2.85500 3.18432 3.24451 3.40914 3.54089 3.67737 3.77904 3.93889 4.06507 4.06766 4.16137 4.29719 4.37340 4.51447 4.52647 4.54959 4.64455 4.70866 4.73575 4.79091 4.83761 4.95260 4.97807 5.04486 5.08300 5.20579 5.22058 5.29218 5.32633 5.42134 5.55413 5.60620 5.71065 5.92215 6.05054 6.20692 6.71142 6.80870 6.88090 7.00828 7.49468 7.82188 8.80059 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.028858 B = 0.001870 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.025682 B =14968.835963 C =15444.892741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.215 4.215 3 C -0.037 4.037 4 C 0.148 3.852 5 O -0.561 6.561 6 C -0.116 4.116 7 C 0.132 3.868 8 N -0.619 5.619 9 C 0.698 3.302 10 O -0.619 6.619 11 N -0.664 5.664 12 C 0.080 3.920 13 C -0.081 4.081 14 C -0.218 4.218 15 C 0.107 3.893 16 O -0.232 6.232 17 C -0.412 4.412 18 H 0.107 0.893 19 C -0.027 4.027 20 N -0.923 5.923 21 Si 1.021 2.979 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.249 1.249 25 C -0.189 4.189 26 C -0.073 4.073 27 C 0.112 3.888 28 C -0.154 4.154 29 H 0.239 0.761 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.385 0.615 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.417 0.583 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.275 -26.706 -2.372 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.215 4.215 3 C -0.074 4.074 4 C 0.108 3.892 5 O -0.369 6.369 6 C -0.155 4.155 7 C 0.010 3.990 8 N -0.356 5.356 9 C 0.400 3.600 10 O -0.499 6.499 11 N -0.315 5.315 12 C -0.014 4.014 13 C -0.101 4.101 14 C -0.238 4.238 15 C 0.056 3.944 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.224 4.224 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.172 1.172 25 C -0.209 4.209 26 C -0.093 4.093 27 C -0.011 4.011 28 C -0.193 4.193 29 H 0.256 0.744 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.258 0.742 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.425 -26.590 -2.460 33.021 hybrid contribution -0.869 0.825 0.017 1.199 sum -20.294 -25.764 -2.443 32.888 Atomic orbital electron populations 1.25642 0.96774 0.99995 0.99261 1.23214 0.94859 1.01405 1.01986 1.19482 0.85245 1.02072 1.00617 1.20978 0.94170 0.90978 0.83110 1.86536 1.29499 1.86004 1.34837 1.21922 0.93152 1.01212 0.99175 1.21420 0.97085 0.80997 0.99529 1.47303 1.07251 1.04096 1.76926 1.16055 0.84934 0.81144 0.77820 1.90897 1.13813 1.86325 1.58838 1.42313 1.09875 1.02172 1.77187 1.17166 0.95254 0.86705 1.02268 1.20789 1.00897 0.91197 0.97232 1.21103 0.96611 1.00112 1.05987 1.19856 0.91940 0.87563 0.95035 1.83963 1.42830 1.17846 1.69251 1.21871 1.07617 0.87302 1.31984 0.87588 1.26639 0.96624 1.00895 0.98199 1.70211 1.17501 1.25497 1.42919 0.84555 0.78854 0.75035 0.77553 1.18990 1.19860 1.17207 1.20261 1.02629 0.92850 1.05159 1.20856 0.94705 0.95563 0.98157 1.21876 0.77951 1.00992 1.00251 1.22665 1.01969 0.95486 0.99169 0.74418 0.88023 0.88162 0.76579 0.89871 0.88418 0.90821 0.90605 0.74239 0.82518 0.84910 0.91952 0.87081 0.85029 0.89594 0.89258 0.90645 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 19.25 74.32 1.43 -0.09 16 2 C -0.21 -2.02 11.00 31.13 0.34 -1.68 16 3 C -0.04 -0.30 5.02 28.79 0.14 -0.16 16 4 C 0.15 1.43 0.73 -10.77 -0.01 1.42 16 5 O -0.56 -5.98 11.69 -148.98 -1.74 -7.72 16 6 C -0.12 -1.44 5.11 30.67 0.16 -1.29 16 7 C 0.13 2.46 6.20 86.36 0.54 3.00 16 8 N -0.62 -12.33 2.97 -836.05 -2.48 -14.81 16 9 C 0.70 20.04 8.14 179.06 1.46 21.50 16 10 O -0.62 -23.54 13.19 -4.01 -0.05 -23.59 16 11 N -0.66 -17.33 5.25 -317.03 -1.66 -18.99 16 12 C 0.08 2.79 6.30 38.16 0.24 3.03 16 13 C -0.08 -2.74 9.96 22.38 0.22 -2.52 16 14 C -0.22 -9.41 9.16 22.37 0.20 -9.20 16 15 C 0.11 5.49 6.65 22.59 0.15 5.64 16 16 O -0.23 -14.26 9.76 -23.00 -0.22 -14.49 16 17 C -0.41 -24.01 9.48 67.91 0.64 -23.36 16 18 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 19 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 20 N -0.92 -57.47 13.67 21.61 0.30 -57.17 16 21 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 25 C -0.19 -8.91 9.98 22.37 0.22 -8.69 16 26 C -0.07 -2.96 8.69 22.38 0.19 -2.77 16 27 C 0.11 1.34 6.17 86.51 0.53 1.88 16 28 C -0.15 -1.44 4.80 30.82 0.15 -1.30 16 29 H 0.24 0.36 7.80 -4.41 -0.03 0.33 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.39 2.32 8.27 -74.05 -0.61 1.71 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 1.73 6.99 -2.39 -0.02 1.71 16 36 H 0.08 1.38 7.81 -2.39 -0.02 1.36 16 37 H 0.42 7.39 6.31 -92.71 -0.58 6.80 16 38 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.13 5.60 5.63 -2.91 -0.02 5.59 16 40 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 41 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 42 H 0.13 5.37 6.22 -2.91 -0.02 5.36 16 43 H 0.09 0.92 7.81 -2.39 -0.02 0.90 16 44 H 0.09 0.84 5.64 -2.39 -0.01 0.83 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 0.65 7.04 -2.39 -0.02 0.64 16 Total: -1.00 -81.04 379.40 3.09 -77.95 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.16 Total: 29.62 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 7.09 Total: -15.64 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -3.85 Total: -90.98 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.02 Total: -45.80 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -81.04 3.09 -77.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352889149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.461 kcal (2) G-P(sol) polarization free energy of solvation -81.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds