Wall clock time and date at job start Wed Apr 1 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47211 * 1.05002 * 3 2 1 5 5 C 1.34772 * 120.00062 * 81.98362 * 4 3 2 6 6 O 1.21353 * 120.00139 * 175.05745 * 5 4 3 7 7 C 1.49446 * 120.00177 * 355.04479 * 5 4 3 8 8 O 1.21346 * 120.00153 * 354.63327 * 7 5 4 9 9 N 1.34782 * 119.99941 * 174.62762 * 7 5 4 10 10 C 1.46497 * 119.99636 * 180.02562 * 9 7 5 11 11 C 1.50705 * 109.47044 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.92990 * 89.99753 * 11 10 9 13 13 C 1.38104 * 120.06837 * 179.97438 * 12 11 10 14 14 C 1.38888 * 119.92613 * 0.02562 * 13 12 11 15 15 O 1.35755 * 120.06507 * 180.02562 * 14 13 12 16 16 C 1.34829 * 116.99975 * 355.86730 * 15 14 13 17 17 H 1.08007 * 119.99886 * 355.25862 * 16 15 14 18 18 C 1.38655 * 119.99739 * 175.25605 * 16 15 14 19 19 N 1.31546 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47237 * 60.00035 * 20 18 16 22 22 H 1.48500 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47211 * 299.99826 * 20 18 16 24 24 C 1.38875 * 119.86444 * 0.27576 * 14 13 12 25 25 C 1.38101 * 119.92859 * 359.44745 * 24 14 13 26 26 C 1.46500 * 119.99712 * 261.97893 * 4 3 2 27 27 C 1.53003 * 109.47127 * 302.19599 * 26 4 3 28 28 C 1.52999 * 109.47217 * 62.19812 * 26 4 3 29 29 H 4.40636 * 5.51404 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47390 * 241.04605 * 3 2 1 31 31 H 1.09004 * 109.46941 * 121.04750 * 3 2 1 32 32 H 0.96992 * 120.00164 * 0.02562 * 9 7 5 33 33 H 1.08997 * 109.47394 * 60.00027 * 10 9 7 34 34 H 1.09000 * 109.47472 * 299.99837 * 10 9 7 35 35 H 1.07997 * 119.96966 * 0.02562 * 12 11 10 36 36 H 1.07992 * 120.04018 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99908 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.03637 * 179.72692 * 24 14 13 39 39 H 1.08003 * 119.96560 * 180.27404 * 25 24 14 40 40 H 1.09002 * 109.46832 * 182.20121 * 26 4 3 41 41 H 1.09002 * 109.46838 * 60.00526 * 27 26 4 42 42 H 1.09007 * 109.46959 * 179.97438 * 27 26 4 43 43 H 1.09000 * 109.47300 * 300.00023 * 27 26 4 44 44 H 1.09004 * 109.46966 * 59.99871 * 28 26 4 45 45 H 1.09007 * 109.46883 * 179.97438 * 28 26 4 46 46 H 1.08998 * 109.47039 * 299.99737 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3801 -0.0253 5 6 3.2064 -2.0483 -1.1935 6 8 3.6946 -3.1588 -1.2284 7 6 2.6843 -1.4220 -2.4459 8 8 2.1087 -0.3549 -2.3962 9 7 2.8527 -2.0423 -3.6305 10 6 2.3413 -1.4280 -4.8582 11 6 2.6568 -2.3167 -6.0337 12 6 1.7572 -3.2928 -6.4218 13 6 2.0431 -4.1085 -7.4990 14 6 3.2358 -3.9480 -8.1923 15 8 3.5195 -4.7478 -9.2519 16 6 2.6419 -5.7338 -9.5268 17 1 1.8017 -5.9073 -8.8707 18 6 2.8180 -6.5248 -10.6519 19 7 3.8416 -6.3136 -11.4507 20 14 1.6017 -7.8903 -11.0332 21 1 0.2462 -7.3105 -11.2109 22 1 2.0113 -8.5840 -12.2807 23 1 1.5810 -8.8625 -9.9108 24 6 4.1398 -2.9710 -7.7962 25 6 3.8455 -2.1548 -6.7218 26 6 3.5463 -2.0344 1.2193 27 6 4.6574 -1.2173 1.8819 28 6 2.3483 -2.1283 2.1662 29 1 -1.0497 -0.0004 0.0002 30 1 3.0092 0.4983 0.8992 31 1 3.0091 0.5309 -0.8805 32 1 3.3125 -2.8954 -3.6702 33 1 2.8119 -0.4553 -5.0011 34 1 1.2617 -1.3011 -4.7786 35 1 0.8297 -3.4169 -5.8826 36 1 1.3405 -4.8708 -7.8014 37 1 3.9645 -6.8668 -12.2380 38 1 5.0701 -2.8467 -8.3306 39 1 4.5462 -1.3919 -6.4160 40 1 3.9145 -3.0363 0.9985 41 1 4.2892 -0.2154 2.1026 42 1 4.9631 -1.7039 2.8082 43 1 5.5109 -1.1504 1.2073 44 1 1.5568 -2.7104 1.6941 45 1 2.6543 -2.6155 3.0921 46 1 1.9802 -1.1264 2.3869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354448879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:27 Heat of formation + Delta-G solvation = -4.096949 kcal Electronic energy + Delta-G solvation = -28749.736127 eV Core-core repulsion = 24607.615985 eV Total energy + Delta-G solvation = -4142.120142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07350 -39.31086 -38.71828 -37.31688 -36.86732 -34.61188 -33.67684 -32.39005 -31.94661 -30.32600 -30.07782 -27.73950 -27.44555 -26.44558 -25.34271 -23.96228 -22.07747 -21.17450 -20.69847 -20.18616 -18.74645 -18.09757 -17.80544 -17.44607 -17.01116 -16.17896 -16.02984 -15.40785 -15.07101 -14.68394 -14.56345 -14.46133 -14.38265 -13.96424 -13.87942 -13.71352 -13.53989 -13.38631 -13.32176 -12.81389 -12.76532 -12.72629 -12.59100 -12.14635 -11.75943 -11.74531 -11.70129 -11.41323 -11.23827 -10.96550 -10.82294 -10.74262 -10.57257 -10.50333 -10.29291 -9.55476 -9.46435 -9.36446 -9.09849 -8.91622 -8.30191 -7.35296 -6.54088 -4.12738 1.29766 1.84130 2.11893 2.17012 2.76465 2.78821 3.08480 3.09109 3.09749 3.12788 3.55515 3.89887 4.21108 4.27670 4.45440 4.53889 4.65983 4.77641 4.85406 5.02251 5.09522 5.15820 5.18241 5.22302 5.29539 5.34720 5.36362 5.51755 5.62349 5.72975 5.75140 5.77881 5.79223 5.84021 6.03331 6.10855 6.27097 6.32297 6.57415 6.69857 6.78379 6.93216 7.09997 7.21088 7.25069 7.33492 7.52283 7.58792 7.69620 7.90383 7.92960 8.91039 9.58666 10.63209 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.001907 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.810448 B =14680.644654 C =14838.219994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.219 3.781 4 N -0.582 5.582 5 C 0.510 3.490 6 O -0.514 6.514 7 C 0.498 3.502 8 O -0.516 6.516 9 N -0.688 5.688 10 C 0.179 3.821 11 C -0.220 4.220 12 C -0.048 4.048 13 C -0.237 4.237 14 C 0.162 3.838 15 O -0.171 6.171 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.858 5.858 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.195 4.195 25 C -0.052 4.052 26 C 0.127 3.873 27 C -0.162 4.162 28 C -0.160 4.160 29 H 0.213 0.787 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.413 0.587 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.272 0.728 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 11.428 24.610 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C 0.097 3.903 4 N -0.316 5.316 5 C 0.293 3.707 6 O -0.389 6.389 7 C 0.279 3.721 8 O -0.393 6.393 9 N -0.341 5.341 10 C 0.058 3.942 11 C -0.221 4.221 12 C -0.067 4.067 13 C -0.256 4.256 14 C 0.107 3.893 15 O -0.073 6.073 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.215 4.215 25 C -0.071 4.071 26 C 0.024 3.976 27 C -0.220 4.220 28 C -0.218 4.218 29 H 0.230 0.770 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.104 11.461 24.201 26.860 hybrid contribution -0.802 -1.091 -0.274 1.382 sum -2.906 10.370 23.927 26.239 Atomic orbital electron populations 1.24802 0.95831 0.98350 1.02351 1.23089 0.94449 1.01670 0.99183 1.18653 0.84562 0.82343 1.04701 1.47912 1.62831 1.14313 1.06519 1.20432 0.79448 0.85791 0.85046 1.90772 1.43000 1.19197 1.85915 1.20015 0.81502 0.85725 0.84898 1.90756 1.41284 1.21005 1.86229 1.46258 1.56894 1.25164 1.05764 1.20121 0.98971 0.95036 0.80118 1.19138 0.98370 1.03403 1.01239 1.20640 0.97462 0.93407 0.95176 1.21160 0.99392 1.04854 1.00225 1.19458 0.92263 0.89747 0.87873 1.83988 1.46063 1.37854 1.39434 1.21316 1.07505 1.08128 1.10025 0.88941 1.25323 0.97650 0.98704 0.94775 1.70022 1.27367 1.38456 1.13377 0.85759 0.79496 0.79686 0.78400 1.19410 1.20192 1.19392 1.20203 1.00721 0.99382 1.01168 1.20522 0.95185 0.97278 0.94081 1.21264 0.95009 0.98471 0.82811 1.22170 0.98242 1.00452 1.01145 1.22149 0.97901 1.02643 0.99144 0.77019 0.88443 0.86296 0.75022 0.90897 0.91027 0.87373 0.85349 0.91785 0.86298 0.86896 0.87589 0.92020 0.90896 0.91794 0.92212 0.91129 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.18 -1.91 10.83 -37.12 -0.40 -2.31 16 3 C 0.22 1.92 4.79 -6.83 -0.03 1.89 16 4 N -0.58 -5.73 2.36 -169.93 -0.40 -6.13 16 5 C 0.51 6.42 7.65 -11.59 -0.09 6.33 16 6 O -0.51 -7.56 15.83 5.49 0.09 -7.47 16 7 C 0.50 6.56 7.68 -11.58 -0.09 6.47 16 8 O -0.52 -7.22 12.02 5.50 0.07 -7.15 16 9 N -0.69 -9.05 5.54 -61.91 -0.34 -9.40 16 10 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 11 C -0.22 -3.50 5.25 -104.57 -0.55 -4.05 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.24 -4.93 9.15 -39.39 -0.36 -5.29 16 14 C 0.16 3.76 6.65 -39.10 -0.26 3.50 16 15 O -0.17 -4.75 9.76 0.04 0.00 -4.75 16 16 C -0.39 -10.72 9.46 30.89 0.29 -10.43 16 17 H 0.09 2.32 5.25 -52.48 -0.28 2.04 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.64 13.67 55.48 0.76 -23.89 16 20 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.20 -3.93 9.99 -39.40 -0.39 -4.32 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 26 C 0.13 1.00 3.24 -67.93 -0.22 0.78 16 27 C -0.16 -0.90 9.15 37.16 0.34 -0.56 16 28 C -0.16 -1.10 8.88 37.16 0.33 -0.77 16 29 H 0.21 1.48 7.80 -54.10 -0.42 1.06 16 30 H 0.10 0.58 6.34 -51.93 -0.33 0.25 16 31 H 0.12 1.13 6.12 -51.93 -0.32 0.82 16 32 H 0.41 5.54 7.95 -40.82 -0.32 5.21 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.69 5.68 -52.49 -0.30 2.39 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.11 1.00 6.91 -51.93 -0.36 0.64 16 41 H 0.06 0.28 6.59 -51.93 -0.34 -0.06 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.06 0.40 7.33 -51.93 -0.38 0.02 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -31.66 393.88 -6.66 -38.32 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.98 Total: 8.70 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.76 Total: -9.23 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.01 Total: -39.42 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.15 Total: -19.37 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.66 -6.66 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354448879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.225 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds