Wall clock time and date at job start Wed Apr 1 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46775 * 2 1 4 4 C 1.50699 * 109.47063 * 239.99949 * 2 1 3 5 5 H 1.08000 * 119.99820 * 239.99854 * 4 2 1 6 6 C 1.37875 * 120.00266 * 59.99857 * 4 2 1 7 7 N 1.31513 * 120.00194 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46632 * 60.00195 * 8 6 4 10 10 H 1.48493 * 109.47123 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47296 * 300.00677 * 8 6 4 12 12 C 1.52997 * 109.46657 * 119.99725 * 2 1 3 13 13 N 1.46501 * 109.47366 * 299.99969 * 12 2 1 14 14 C 1.34776 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99969 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99842 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46755 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.46752 * 180.02562 * 17 16 14 19 19 N 1.30278 * 120.09113 * 269.97859 * 18 17 16 20 20 C 1.34877 * 120.66076 * 180.02562 * 19 18 17 21 21 C 1.40321 * 119.95590 * 179.97438 * 20 19 18 22 22 C 1.36468 * 119.97083 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.58010 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.48930 * 0.02562 * 23 22 21 25 25 C 1.38976 * 119.90561 * 359.96054 * 24 23 22 26 26 O 1.35267 * 120.10754 * 180.27831 * 25 24 23 27 27 C 1.34715 * 119.41273 * 180.27634 * 26 25 24 28 28 O 1.21653 * 120.38817 * 179.74922 * 27 26 25 29 29 H 1.08995 * 109.47429 * 300.00113 * 1 2 3 30 30 H 1.09006 * 109.46926 * 60.00782 * 1 2 3 31 31 H 1.09006 * 109.47006 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46724 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47274 * 299.99299 * 3 2 1 34 34 H 1.08995 * 109.47234 * 59.99767 * 3 2 1 35 35 H 0.96993 * 120.00198 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.46718 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.47319 * 60.00484 * 12 2 1 38 38 H 0.96999 * 120.00238 * 0.02562 * 13 12 2 39 39 H 1.08998 * 109.46883 * 60.00215 * 16 14 13 40 40 H 1.08997 * 109.47455 * 300.00449 * 16 14 13 41 41 H 1.08993 * 109.46935 * 60.00518 * 17 16 14 42 42 H 1.08998 * 109.47519 * 299.99806 * 17 16 14 43 43 H 1.07997 * 120.01519 * 359.96192 * 21 20 19 44 44 H 1.08004 * 119.70621 * 180.02562 * 22 21 20 45 45 H 1.07996 * 119.75813 * 179.97438 * 23 22 21 46 46 H 1.07995 * 120.04935 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5755 -1.4763 3.7809 16 6 1.3756 0.2201 4.8999 17 6 1.8865 -0.5005 6.1492 18 6 1.3841 0.2100 7.3797 19 7 2.0864 1.1690 7.9127 20 6 1.6480 1.8122 9.0142 21 6 2.4167 2.8427 9.5764 22 6 1.9731 3.4941 10.6906 23 6 0.7641 3.1466 11.2773 24 6 -0.0080 2.1368 10.7434 25 6 0.4242 1.4602 9.6090 26 8 -0.3327 0.4725 9.0785 27 6 0.1024 -0.1779 7.9819 28 8 -0.5619 -1.0720 7.4927 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.7090 1.1612 -3.4845 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9936 0.7579 2.3564 39 1 0.2856 0.2202 4.9003 40 1 1.7389 1.2478 4.8995 41 1 2.9764 -0.5001 6.1486 42 1 1.5235 -1.5283 6.1499 43 1 3.3591 3.1201 9.1278 44 1 2.5681 4.2869 11.1195 45 1 0.4260 3.6706 12.1590 46 1 -0.9473 1.8720 11.2059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362703466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:10 Heat of formation + Delta-G solvation = -65.116736 kcal Electronic energy + Delta-G solvation = -28844.267131 eV Core-core repulsion = 24699.500972 eV Total energy + Delta-G solvation = -4144.766159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62279 -39.58231 -39.31669 -37.96375 -37.21058 -36.36302 -33.41951 -33.25475 -31.43436 -30.91029 -30.11353 -26.95558 -25.71306 -25.55641 -25.25319 -24.69563 -23.60466 -22.78204 -20.35155 -19.99441 -19.11774 -18.75832 -17.79068 -17.44440 -16.90970 -16.39260 -15.79782 -15.61014 -15.40036 -15.24929 -15.11152 -14.65050 -14.52921 -14.19506 -13.93477 -13.64235 -13.62649 -12.97666 -12.88299 -12.65980 -12.65325 -12.45234 -12.32691 -12.16212 -11.97175 -11.70723 -11.38300 -11.18367 -11.17294 -10.82992 -10.72012 -10.37028 -10.19432 -9.88807 -9.61991 -9.58615 -9.49158 -9.24335 -8.92091 -8.77839 -8.43824 -8.29418 -6.00697 -4.10735 -0.52863 0.42041 1.07625 1.71323 2.17057 2.98104 3.05580 3.16553 3.30238 3.31308 3.35508 3.39180 3.78390 3.91398 4.19414 4.40752 4.48193 4.50982 4.61141 4.80365 4.91281 5.04064 5.17933 5.25910 5.29037 5.34127 5.46206 5.53644 5.69043 5.77638 5.95103 5.96203 6.23541 6.25262 6.34964 6.52473 6.73030 6.79850 6.83849 6.94814 7.03407 7.04105 7.04853 7.36820 7.56911 7.70648 8.02296 8.06063 8.16508 8.39835 8.70346 8.89816 9.54919 11.00657 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.001854 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.867950 B =15099.972354 C =15403.057106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.509 3.491 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.045 4.045 18 C 0.109 3.891 19 N -0.388 5.388 20 C 0.002 3.998 21 C -0.034 4.034 22 C -0.136 4.136 23 C -0.062 4.062 24 C -0.129 4.129 25 C 0.099 3.901 26 O -0.260 6.260 27 C 0.467 3.533 28 O -0.421 6.421 29 H 0.006 0.994 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.398 0.602 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 8.506 28.322 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.294 3.706 15 O -0.430 6.430 16 C -0.177 4.177 17 C -0.083 4.083 18 C -0.070 4.070 19 N -0.102 5.102 20 C -0.105 4.105 21 C -0.053 4.053 22 C -0.154 4.154 23 C -0.080 4.080 24 C -0.148 4.148 25 C 0.053 3.947 26 O -0.170 6.170 27 C 0.307 3.693 28 O -0.300 6.300 29 H 0.025 0.975 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.161 0.839 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.141 7.833 27.957 29.033 hybrid contribution -0.755 -0.243 -0.561 0.972 sum -0.896 7.590 27.395 28.441 Atomic orbital electron populations 1.21834 0.97757 0.99218 1.00074 1.18361 0.92809 0.92768 0.90615 1.21831 0.98577 0.98358 1.00072 1.20943 1.31485 1.12086 0.89883 0.92485 1.24885 0.94887 0.94940 0.98856 1.69790 1.36660 1.22728 1.23309 0.86629 0.79222 0.79798 0.82174 1.20289 1.21358 1.20288 1.21724 0.98158 0.95829 0.83395 1.46304 1.52506 1.31800 1.06027 1.20276 0.80822 0.84783 0.84739 1.90679 1.38684 1.26704 1.86972 1.21597 1.02874 1.00951 0.92277 1.20271 1.03120 0.98988 0.85922 1.25087 0.89812 0.93990 0.98073 1.68205 1.31210 1.04102 1.06636 1.18761 0.94345 1.01442 0.95975 1.20913 0.98915 0.91393 0.94044 1.20987 0.96994 1.01114 0.96337 1.21309 0.93370 0.94453 0.98872 1.20656 1.02291 0.97180 0.94633 1.19950 0.90733 0.88975 0.95038 1.84078 1.48068 1.43149 1.41692 1.21903 0.87377 0.81719 0.78297 1.91009 1.57648 1.25371 1.55973 0.97484 0.89620 0.95412 0.95437 0.89612 0.97503 0.92968 0.92663 0.92664 0.76678 0.88798 0.88501 0.87447 0.87624 0.83463 0.84122 0.83881 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 N -0.72 -12.54 4.96 -60.29 -0.30 -12.84 16 14 C 0.51 8.48 7.83 -10.99 -0.09 8.39 16 15 O -0.55 -11.08 15.98 5.56 0.09 -10.99 16 16 C -0.14 -1.66 5.68 -27.88 -0.16 -1.82 16 17 C -0.04 -0.53 4.66 -27.88 -0.13 -0.66 16 18 C 0.11 1.24 6.27 -79.78 -0.50 0.74 16 19 N -0.39 -4.19 10.29 -5.54 -0.06 -4.25 16 20 C 0.00 0.02 6.56 -84.87 -0.56 -0.54 16 21 C -0.03 -0.22 9.94 -39.44 -0.39 -0.61 16 22 C -0.14 -0.57 9.96 -40.01 -0.40 -0.97 16 23 C -0.06 -0.25 10.03 -39.50 -0.40 -0.64 16 24 C -0.13 -0.79 9.99 -39.44 -0.39 -1.19 16 25 C 0.10 0.92 6.73 -38.44 -0.26 0.66 16 26 O -0.26 -2.95 9.97 -22.76 -0.23 -3.17 16 27 C 0.47 5.81 8.15 34.20 0.28 6.09 16 28 O -0.42 -6.25 17.25 -19.37 -0.33 -6.59 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 30 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 34 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.40 6.28 6.16 -40.82 -0.25 6.03 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.11 1.35 7.68 -51.93 -0.40 0.95 16 43 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.14 0.22 8.06 -52.48 -0.42 -0.20 16 45 H 0.14 0.14 8.06 -52.49 -0.42 -0.28 16 46 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -31.15 383.73 -8.59 -39.74 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.18 Total: 3.42 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.86 Total: -3.76 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.16 Total: -40.20 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.47 Total: -20.76 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.15 -8.59 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362703466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.378 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds