Wall clock time and date at job start Wed Apr 1 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29320 * 126.06944 * 2 1 4 4 N 1.26090 * 117.97101 * 179.76114 * 3 2 1 5 5 C 1.30245 * 117.62210 * 0.54262 * 4 3 2 6 6 N 1.38704 * 126.16942 * 179.67668 * 5 4 3 7 7 C 1.46953 * 110.99625 * 123.84566 * 6 5 4 8 8 C 1.53052 * 109.36054 * 176.81326 * 7 6 5 9 9 N 1.46959 * 109.36710 * 58.40408 * 8 7 6 10 10 C 1.46895 * 110.99996 * 176.81153 * 9 8 7 11 11 C 1.50702 * 109.47326 * 313.79425 * 10 9 8 12 12 C 1.38633 * 119.75122 * 269.73472 * 11 10 9 13 13 C 1.37617 * 120.24733 * 179.72537 * 12 11 10 14 14 C 1.40719 * 119.74359 * 0.51750 * 13 12 11 15 15 C 1.41394 * 120.24161 * 179.73273 * 14 13 12 16 16 H 1.08007 * 119.99956 * 204.40889 * 15 14 13 17 17 C 1.39947 * 120.00253 * 24.40804 * 15 14 13 18 18 N 1.30825 * 120.00071 * 17.84522 * 17 15 14 19 19 Si 1.86797 * 119.99824 * 197.84721 * 17 15 14 20 20 H 1.48501 * 109.47381 * 60.00190 * 19 17 15 21 21 H 1.48498 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47557 * 299.99838 * 19 17 15 23 23 C 1.40716 * 119.51350 * 359.75015 * 14 13 12 24 24 C 1.37618 * 119.74077 * 0.02562 * 23 14 13 25 25 C 1.46953 * 110.87557 * 300.67760 * 9 8 7 26 26 C 1.46958 * 110.99597 * 0.05013 * 6 5 4 27 27 S 1.76483 * 126.06543 * 180.30212 * 2 1 3 28 28 H 1.08997 * 109.47638 * 269.69697 * 1 2 3 29 29 H 1.09006 * 109.47154 * 29.69340 * 1 2 3 30 30 H 1.08998 * 109.47440 * 149.69073 * 1 2 3 31 31 H 1.09001 * 109.49036 * 296.77469 * 7 6 5 32 32 H 1.09000 * 109.49051 * 56.85009 * 7 6 5 33 33 H 1.08995 * 109.48998 * 298.43211 * 8 7 6 34 34 H 1.09007 * 109.48685 * 178.36665 * 8 7 6 35 35 H 1.08999 * 109.47671 * 73.79890 * 10 9 8 36 36 H 1.09001 * 109.46924 * 193.80056 * 10 9 8 37 37 H 1.07999 * 119.87320 * 359.96808 * 12 11 10 38 38 H 1.07999 * 120.12656 * 180.27426 * 13 12 11 39 39 H 0.96999 * 119.99887 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.12617 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87455 * 179.97438 * 24 23 14 42 42 H 1.08997 * 109.49420 * 299.35122 * 25 9 8 43 43 H 1.09004 * 109.50368 * 179.29899 * 25 9 8 44 44 H 1.09007 * 109.49197 * 303.14644 * 26 6 5 45 45 H 1.08990 * 109.49267 * 63.19881 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0453 0.0000 4 7 3.5167 0.8677 0.0046 5 6 3.9520 -0.3599 -0.0018 6 7 5.2809 -0.7571 -0.0046 7 6 5.5672 -1.6458 1.1302 8 6 7.0187 -2.1240 1.0466 9 7 7.9163 -0.9603 1.0531 10 6 9.3237 -1.3811 1.0501 11 6 9.5237 -2.4731 2.0692 12 6 9.8696 -2.1444 3.3709 13 6 10.0493 -3.1330 4.3112 14 6 9.8913 -4.4824 3.9444 15 6 10.0789 -5.5069 4.9006 16 1 10.3486 -6.5023 4.5796 17 6 9.9151 -5.2313 6.2628 18 7 9.2643 -4.1609 6.6400 19 14 10.6259 -6.3917 7.5425 20 1 12.0981 -6.4787 7.3686 21 1 10.3181 -5.8784 8.9015 22 1 10.0271 -7.7403 7.3749 23 6 9.5455 -4.8045 2.6189 24 6 9.3663 -3.7991 1.6965 25 6 7.6299 -0.0717 -0.0817 26 6 6.1784 0.4066 0.0019 27 16 2.5459 -1.4266 -0.0075 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3634 0.8928 -0.5091 30 1 -0.3634 -0.8872 -0.5186 31 1 5.4162 -1.1037 2.0637 32 1 4.8985 -2.5059 1.0963 33 1 7.1629 -2.6893 0.1259 34 1 7.2419 -2.7601 1.9031 35 1 9.5894 -1.7541 0.0610 36 1 9.9578 -0.5304 1.3000 37 1 9.9947 -1.1083 3.6489 38 1 10.3144 -2.8745 5.3257 39 1 9.1512 -3.9697 7.5842 40 1 9.4222 -5.8368 2.3266 41 1 9.1014 -4.0439 0.6785 42 1 7.7810 -0.6137 -1.0153 43 1 8.2987 0.7884 -0.0483 44 1 5.9553 1.0428 -0.8547 45 1 6.0340 0.9721 0.9223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363313621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:41 Heat of formation + Delta-G solvation = 98.349622 kcal Electronic energy + Delta-G solvation = -26827.449927 eV Core-core repulsion = 23164.817823 eV Total energy + Delta-G solvation = -3662.632103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24497 -39.53265 -37.75895 -35.76159 -33.71865 -32.71796 -31.19002 -30.62094 -29.34021 -28.81732 -27.34637 -25.71556 -24.42634 -23.79025 -22.84673 -21.09924 -20.50245 -19.80799 -19.42209 -19.04954 -17.34438 -17.14194 -16.07048 -15.42046 -15.14759 -15.10676 -15.02863 -14.70449 -14.40834 -14.12823 -13.99541 -13.54816 -13.50101 -13.30242 -13.09721 -12.91140 -12.60177 -12.25203 -11.99017 -11.73370 -11.55063 -11.36646 -11.33902 -11.13430 -11.08217 -10.83438 -10.64423 -10.54980 -10.53407 -10.37359 -10.12500 -9.73206 -9.63196 -9.42496 -9.16615 -8.59817 -8.08539 -7.50997 -7.33732 -6.81598 -4.40766 0.27974 0.54325 1.12912 2.41393 2.68573 3.00487 3.03352 3.05042 3.13765 3.25715 3.88401 4.04385 4.15014 4.44424 4.61053 4.74668 4.87363 4.97333 5.06808 5.15220 5.24094 5.29288 5.33226 5.42435 5.54877 5.64104 5.72157 5.76675 5.83293 5.85376 6.03603 6.14826 6.23713 6.27665 6.37817 6.44568 6.49185 6.90780 7.01399 7.23019 7.23660 7.33812 7.35963 7.55514 7.80962 7.99858 8.07751 8.24329 8.49547 8.58935 8.83897 8.91798 10.12425 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002379 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.895743 B =11767.955667 C =12875.905375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.009 3.991 3 N -0.245 5.245 4 N -0.312 5.312 5 C 0.224 3.776 6 N -0.441 5.441 7 C 0.058 3.942 8 C 0.060 3.940 9 N -0.535 5.535 10 C 0.122 3.878 11 C -0.220 4.220 12 C -0.078 4.078 13 C -0.168 4.168 14 C 0.113 3.887 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.789 5.789 19 Si 0.907 3.093 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.228 4.228 24 C -0.084 4.084 25 C 0.053 3.947 26 C 0.069 3.931 27 S 0.064 5.936 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.112 0.888 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.282 0.718 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 5.820 -10.677 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.274 4.274 3 N -0.081 5.081 4 N -0.155 5.155 5 C -0.147 4.147 6 N -0.163 5.163 7 C -0.069 4.069 8 C -0.068 4.068 9 N -0.260 5.260 10 C -0.004 4.004 11 C -0.221 4.221 12 C -0.097 4.097 13 C -0.188 4.188 14 C 0.111 3.889 15 C -0.491 4.491 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.247 4.247 24 C -0.103 4.103 25 C -0.076 4.076 26 C -0.060 4.060 27 S 0.305 5.695 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.130 0.870 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.024 6.230 -10.459 17.111 hybrid contribution 0.305 -0.677 0.412 0.849 sum -11.719 5.553 -10.046 16.404 Atomic orbital electron populations 1.20337 0.83883 1.04453 1.04239 1.29619 1.02639 0.89060 1.06100 1.70751 0.96952 1.26847 1.13528 1.71626 1.05725 1.16545 1.21562 1.28177 0.96624 0.90578 0.99318 1.59173 0.96880 1.18848 1.41366 1.22665 0.99160 0.95306 0.89724 1.22245 0.88573 0.92954 1.03010 1.62362 1.05127 1.17321 1.41220 1.20736 0.86710 0.96651 0.96283 1.18844 1.16183 0.92335 0.94782 1.20508 0.99250 0.97298 0.92661 1.21316 1.05951 0.92541 0.98973 1.17626 0.87162 0.92838 0.91300 1.19581 1.41678 0.97340 0.90515 0.90510 1.25915 0.92684 0.95673 0.99932 1.69816 1.28585 1.24566 1.18466 0.86383 0.80643 0.80894 0.78919 1.18805 1.20314 1.19000 1.20936 1.11856 0.96800 0.95139 1.20373 1.00339 0.92721 0.96847 1.22220 0.94513 0.97895 0.92956 1.22292 0.90631 0.89623 1.03404 1.85842 0.99889 1.11602 1.72212 0.89205 0.88871 0.89803 0.91657 0.89560 0.94166 0.87050 0.95627 0.91300 0.89385 0.86511 0.90752 0.89133 0.89900 0.94129 0.89529 0.89152 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.01 0.09 7.79 -13.34 -0.10 -0.01 16 3 N -0.25 -3.41 11.55 33.57 0.39 -3.02 16 4 N -0.31 -4.64 10.65 31.00 0.33 -4.31 16 5 C 0.22 3.04 7.05 -87.13 -0.61 2.42 16 6 N -0.44 -5.91 4.78 -173.28 -0.83 -6.74 16 7 C 0.06 0.80 5.49 -3.77 -0.02 0.78 16 8 C 0.06 0.93 4.64 -3.76 -0.02 0.91 16 9 N -0.54 -8.26 4.85 -235.91 -1.14 -9.41 16 10 C 0.12 2.02 5.43 -4.98 -0.03 1.99 16 11 C -0.22 -4.43 4.16 -104.33 -0.43 -4.86 16 12 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 13 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 14 C 0.11 2.90 5.58 -106.82 -0.60 2.31 16 15 C -0.46 -11.89 9.05 -37.74 -0.34 -12.23 16 16 H 0.08 1.90 7.91 -52.48 -0.41 1.49 16 17 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.79 -19.90 10.95 55.55 0.61 -19.29 16 19 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 23 C -0.23 -5.30 9.80 -38.87 -0.38 -5.69 16 24 C -0.08 -1.74 7.80 -39.66 -0.31 -2.05 16 25 C 0.05 0.67 5.58 -3.77 -0.02 0.65 16 26 C 0.07 0.89 4.98 -3.76 -0.02 0.87 16 27 S 0.06 0.70 22.85 -107.50 -2.46 -1.75 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.08 7.57 -51.93 -0.39 0.68 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 2.03 5.85 -51.93 -0.30 1.73 16 35 H 0.03 0.40 8.02 -51.93 -0.42 -0.01 16 36 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 39 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 40 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.08 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.10 8.01 -51.93 -0.42 0.68 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -27.88 377.10 -12.24 -40.12 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.47 Total: 5.37 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -3.32 Total: -19.84 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.65 Total: -42.77 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.46 Total: -1.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.88 -12.24 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363313621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.466 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds